Wall clock time and date at job start Tue Mar 31 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 H 1.09009 * 110.28799 * 300.70412 * 5 3 2 7 7 C 1.54374 * 110.32663 * 62.82827 * 5 3 2 8 8 N 1.48832 * 104.46982 * 95.07030 * 7 5 3 9 9 C 1.46893 * 110.97467 * 159.05408 * 8 7 5 10 10 C 1.50703 * 109.47163 * 74.57936 * 9 8 7 11 11 H 1.08000 * 119.99813 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99974 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00249 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00124 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.46974 * 90.00334 * 14 12 10 16 16 H 1.48501 * 109.47258 * 209.99969 * 14 12 10 17 17 H 1.48497 * 109.47010 * 330.00456 * 14 12 10 18 18 C 1.48561 * 104.23134 * 39.49782 * 8 7 5 19 19 C 1.54258 * 110.32661 * 178.57640 * 5 3 2 20 20 H 1.09004 * 110.32250 * 0.09880 * 19 5 3 21 21 C 1.50705 * 110.32676 * 122.20476 * 19 5 3 22 22 C 1.38233 * 119.99776 * 59.73130 * 21 19 5 23 23 C 1.38229 * 119.99953 * 179.81123 * 22 21 19 24 24 C 1.38238 * 120.00007 * 0.41774 * 23 22 21 25 25 C 1.38241 * 119.99943 * 359.80894 * 24 23 22 26 26 C 1.38229 * 119.99511 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 28 28 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 29 29 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 30 30 H 1.09001 * 110.41612 * 213.82467 * 7 5 3 31 31 H 1.09006 * 110.41230 * 336.26828 * 7 5 3 32 32 H 1.08999 * 109.47251 * 194.58113 * 9 8 7 33 33 H 1.08996 * 109.47107 * 314.58231 * 9 8 7 34 34 H 0.96998 * 120.00484 * 180.02562 * 13 12 10 35 35 H 1.08995 * 110.41036 * 201.71333 * 18 8 7 36 36 H 1.09002 * 110.40728 * 79.27452 * 18 8 7 37 37 H 1.08000 * 120.00117 * 359.97438 * 22 21 19 38 38 H 1.07996 * 120.00427 * 180.20322 * 23 22 21 39 39 H 1.07995 * 120.00196 * 179.79204 * 24 23 22 40 40 H 1.07999 * 120.00085 * 179.97438 * 25 24 23 41 41 H 1.08013 * 119.99726 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9714 0.7731 0.8783 7 6 4.1359 0.6431 -1.2888 8 7 4.3242 1.7927 -2.2150 9 6 5.2925 1.4649 -3.2699 10 6 4.6504 0.5395 -4.2712 11 1 3.6254 0.2266 -4.1374 12 6 5.3712 0.0932 -5.3585 13 7 6.6192 0.4747 -5.5216 14 14 4.5751 -1.0533 -6.6000 15 1 3.9295 -0.2520 -7.6707 16 1 5.6118 -1.9331 -7.1970 17 1 3.5512 -1.8860 -5.9192 18 6 4.8340 2.8834 -1.3446 19 6 4.0257 2.7470 -0.0364 20 1 3.1626 3.4127 -0.0518 21 6 4.8995 3.0519 1.1530 22 6 6.0739 2.3487 1.3461 23 6 6.8773 2.6309 2.4350 24 6 6.5021 3.6104 3.3354 25 6 5.3253 4.3104 3.1449 26 6 4.5237 4.0304 2.0541 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 5.0905 0.1582 -1.0845 31 1 3.4273 -0.0718 -1.7071 32 1 5.6076 2.3801 -3.7710 33 1 6.1601 0.9757 -2.8274 34 1 7.1262 0.1610 -6.2868 35 1 4.6511 3.8542 -1.8051 36 1 5.8979 2.7484 -1.1498 37 1 6.3650 1.5807 0.6449 38 1 7.7965 2.0839 2.5841 39 1 7.1282 3.8286 4.1879 40 1 5.0320 5.0753 3.8486 41 1 3.6040 4.5770 1.9054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451995601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:37 Heat of formation + Delta-G solvation = -56.207472 kcal Electronic energy + Delta-G solvation = -23108.228731 eV Core-core repulsion = 19759.946910 eV Total energy + Delta-G solvation = -3348.281821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69819 -39.40138 -37.68006 -36.19264 -33.53160 -32.05774 -30.88718 -30.56456 -28.34713 -27.30417 -26.33582 -23.28457 -22.98424 -22.49721 -21.14716 -20.29034 -19.39882 -17.51359 -16.84290 -16.64824 -16.21314 -16.12448 -15.26922 -15.06343 -14.67074 -14.24179 -14.10127 -13.53241 -13.33229 -13.19708 -13.05581 -12.79114 -12.54247 -12.17509 -12.07329 -11.72042 -11.46152 -11.28192 -11.19825 -11.03548 -10.75343 -10.68910 -10.63422 -10.49188 -10.48038 -10.12839 -9.84691 -9.24176 -8.89722 -8.66030 -8.43718 -7.49014 -6.04219 -4.05678 1.35372 1.42137 2.44391 2.88125 3.32152 3.38047 3.41885 3.78262 4.41028 4.60833 4.74038 4.85592 4.99233 5.02254 5.10049 5.16447 5.19819 5.25483 5.26029 5.32529 5.47695 5.53499 5.55074 5.60338 5.74074 5.81098 6.02992 6.07084 6.19050 6.29867 6.35164 6.45041 6.50157 6.52396 6.57057 6.75895 7.00220 7.06182 7.21621 7.73240 7.91387 7.96027 8.09936 8.45481 9.01791 9.58888 11.06685 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014022 B = 0.005037 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.446486 B = 5557.823880 C = 7081.031078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.481 3.519 4 O -0.507 6.507 5 C -0.083 4.083 6 H 0.109 0.891 7 C 0.056 3.944 8 N -0.506 5.506 9 C 0.183 3.817 10 C -0.506 4.506 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.898 3.102 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.040 3.960 19 C -0.050 4.050 20 H 0.108 0.892 21 C -0.069 4.069 22 C -0.112 4.112 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.113 4.113 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.032 0.968 33 H -0.003 1.003 34 H 0.261 0.739 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 2.584 17.340 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.273 6.273 3 C 0.324 3.676 4 O -0.395 6.395 5 C -0.102 4.102 6 H 0.127 0.873 7 C -0.072 4.072 8 N -0.231 5.231 9 C 0.058 3.942 10 C -0.545 4.545 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.726 3.274 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.088 4.088 19 C -0.069 4.069 20 H 0.126 0.874 21 C -0.069 4.069 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.146 4.146 25 C -0.140 4.140 26 C -0.131 4.131 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.015 0.985 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.867 2.996 16.913 17.852 hybrid contribution 0.309 -0.788 -0.388 0.931 sum -4.558 2.208 16.525 17.284 Atomic orbital electron populations 1.23223 0.76758 1.03416 1.02359 1.86509 1.23091 1.33543 1.84184 1.23452 0.91796 0.81106 0.71210 1.90590 1.66944 1.36333 1.45610 1.21983 0.87607 0.98426 1.02216 0.87308 1.23010 1.00315 0.95000 0.88886 1.65656 1.45287 1.03535 1.08604 1.19897 0.88957 0.96698 0.88678 1.21111 0.98823 1.27430 1.07125 0.91932 1.24975 0.94838 0.96723 0.97984 1.69954 1.08750 1.45276 1.29874 0.86500 0.78926 0.80624 0.81392 1.20634 1.21307 1.19812 1.23186 0.96477 0.97982 0.91196 1.21044 0.98386 0.94795 0.92634 0.87377 1.19863 0.95241 0.96082 0.95714 1.21126 0.94296 0.99877 0.97742 1.21134 0.99621 0.98073 0.94849 1.21116 0.97062 0.96929 0.99479 1.21108 0.95097 0.99914 0.97888 1.21112 0.99813 0.97723 0.94411 0.91778 0.92287 0.88328 0.92779 0.89241 0.94955 0.98497 0.92905 0.90289 0.93785 0.85807 0.86138 0.86414 0.86297 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.39 10.35 -39.26 -0.41 -5.79 16 3 C 0.48 7.97 7.18 36.00 0.26 8.23 16 4 O -0.51 -9.28 15.00 -18.75 -0.28 -9.56 16 5 C -0.08 -1.29 2.99 -90.39 -0.27 -1.56 16 6 H 0.11 1.47 7.36 -51.92 -0.38 1.09 16 7 C 0.06 1.05 5.67 -2.03 -0.01 1.04 16 8 N -0.51 -10.87 5.33 -231.18 -1.23 -12.10 16 9 C 0.18 4.69 4.59 -4.98 -0.02 4.67 16 10 C -0.51 -14.15 8.97 -34.44 -0.31 -14.46 16 11 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 14 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 18 C 0.04 0.72 5.90 -2.18 -0.01 0.71 16 19 C -0.05 -0.77 2.87 -90.39 -0.26 -1.03 16 20 H 0.11 1.78 6.25 -51.93 -0.32 1.46 16 21 C -0.07 -0.94 4.74 -104.62 -0.50 -1.44 16 22 C -0.11 -1.47 8.16 -39.59 -0.32 -1.79 16 23 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 24 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 26 C -0.11 -1.40 9.68 -39.59 -0.38 -1.78 16 27 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.99 7.76 -51.93 -0.40 0.58 16 31 H 0.09 1.76 7.68 -51.93 -0.40 1.37 16 32 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.00 -0.07 7.77 -51.93 -0.40 -0.48 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.04 0.78 6.66 -51.93 -0.35 0.44 16 37 H 0.12 1.65 7.67 -52.49 -0.40 1.24 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.12 1.40 7.97 -52.48 -0.42 0.98 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -31.55 341.79 -9.11 -40.66 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.00 Total: 0.49 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -2.05 Total: -9.68 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.50 Total: -37.84 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.69 Total: -15.35 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.55 -9.11 -40.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451995601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.552 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds