Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 H 1.09009 * 110.28799 * 300.70412 * 5 3 2 7 7 C 1.54374 * 110.32663 * 62.82827 * 5 3 2 8 8 N 1.48832 * 104.46982 * 95.07030 * 7 5 3 9 9 C 1.46893 * 110.97467 * 159.05408 * 8 7 5 10 10 C 1.50703 * 109.47163 * 74.57936 * 9 8 7 11 11 H 1.08000 * 119.99813 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99974 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00249 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00124 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.46974 * 90.00334 * 14 12 10 16 16 H 1.48501 * 109.47258 * 209.99969 * 14 12 10 17 17 H 1.48497 * 109.47010 * 330.00456 * 14 12 10 18 18 C 1.48561 * 104.23134 * 39.49782 * 8 7 5 19 19 C 1.54258 * 110.32661 * 178.57640 * 5 3 2 20 20 H 1.09004 * 110.32250 * 0.09880 * 19 5 3 21 21 C 1.50705 * 110.32676 * 122.20476 * 19 5 3 22 22 C 1.38233 * 119.99776 * 59.73130 * 21 19 5 23 23 C 1.38229 * 119.99953 * 179.81123 * 22 21 19 24 24 C 1.38238 * 120.00007 * 0.41774 * 23 22 21 25 25 C 1.38241 * 119.99943 * 359.80894 * 24 23 22 26 26 C 1.38229 * 119.99511 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 28 28 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 29 29 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 30 30 H 1.09001 * 110.41612 * 213.82467 * 7 5 3 31 31 H 1.09006 * 110.41230 * 336.26828 * 7 5 3 32 32 H 1.08999 * 109.47251 * 194.58113 * 9 8 7 33 33 H 1.08996 * 109.47107 * 314.58231 * 9 8 7 34 34 H 0.96998 * 120.00484 * 180.02562 * 13 12 10 35 35 H 1.08995 * 110.41036 * 201.71333 * 18 8 7 36 36 H 1.09002 * 110.40728 * 79.27452 * 18 8 7 37 37 H 1.08000 * 120.00117 * 359.97438 * 22 21 19 38 38 H 1.07996 * 120.00427 * 180.20322 * 23 22 21 39 39 H 1.07995 * 120.00196 * 179.79204 * 24 23 22 40 40 H 1.07999 * 120.00085 * 179.97438 * 25 24 23 41 41 H 1.08013 * 119.99726 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9714 0.7731 0.8783 7 6 4.1359 0.6431 -1.2888 8 7 4.3242 1.7927 -2.2150 9 6 5.2925 1.4649 -3.2699 10 6 4.6504 0.5395 -4.2712 11 1 3.6254 0.2266 -4.1374 12 6 5.3712 0.0932 -5.3585 13 7 6.6192 0.4747 -5.5216 14 14 4.5751 -1.0533 -6.6000 15 1 3.9295 -0.2520 -7.6707 16 1 5.6118 -1.9331 -7.1970 17 1 3.5512 -1.8860 -5.9192 18 6 4.8340 2.8834 -1.3446 19 6 4.0257 2.7470 -0.0364 20 1 3.1626 3.4127 -0.0518 21 6 4.8995 3.0519 1.1530 22 6 6.0739 2.3487 1.3461 23 6 6.8773 2.6309 2.4350 24 6 6.5021 3.6104 3.3354 25 6 5.3253 4.3104 3.1449 26 6 4.5237 4.0304 2.0541 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 5.0905 0.1582 -1.0845 31 1 3.4273 -0.0718 -1.7071 32 1 5.6076 2.3801 -3.7710 33 1 6.1601 0.9757 -2.8274 34 1 7.1262 0.1610 -6.2868 35 1 4.6511 3.8542 -1.8051 36 1 5.8979 2.7484 -1.1498 37 1 6.3650 1.5807 0.6449 38 1 7.7965 2.0839 2.5841 39 1 7.1282 3.8286 4.1879 40 1 5.0320 5.0753 3.8486 41 1 3.6040 4.5770 1.9054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451995601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = -74.713110 kcal Electronic energy + Delta-G solvation = -23109.031196 eV Core-core repulsion = 19759.946910 eV Total energy + Delta-G solvation = -3349.084286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.04 seconds Orbital eigenvalues (eV) -41.98293 -40.49972 -38.97980 -37.49229 -35.36068 -33.72101 -31.93320 -31.73712 -29.79651 -28.42273 -28.07393 -24.99728 -24.22181 -23.52531 -22.41339 -21.87113 -20.64365 -18.82536 -18.38896 -17.92687 -17.78310 -17.32250 -16.75789 -16.23923 -16.10925 -15.57220 -15.47880 -14.93614 -14.56899 -14.41045 -14.19293 -14.03535 -13.84077 -13.78460 -13.55135 -12.96629 -12.94789 -12.88404 -12.52972 -12.49850 -12.42201 -12.21085 -11.97103 -11.79070 -11.72657 -11.70542 -11.46703 -11.26019 -10.61296 -9.80269 -9.62930 -9.23876 -8.21298 -6.31358 0.42298 0.52088 1.13056 1.41113 1.42404 1.53590 1.72603 2.40111 2.84515 3.10956 3.22176 3.42052 3.59585 3.78853 4.02083 4.04711 4.15212 4.21585 4.30306 4.31271 4.33828 4.37579 4.44252 4.62879 4.66271 4.70540 4.73569 4.79285 4.89059 5.00377 5.08729 5.12994 5.18031 5.21192 5.35850 5.59876 5.62649 5.64536 5.74866 5.96175 6.11861 6.15405 6.44316 6.69490 6.82810 7.38403 8.89753 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014022 B = 0.005037 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.446486 B = 5557.823880 C = 7081.031078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.480 3.520 4 O -0.528 6.528 5 C -0.073 4.073 6 H 0.134 0.866 7 C 0.059 3.941 8 N -0.523 5.523 9 C 0.200 3.800 10 C -0.524 4.524 11 H 0.058 0.942 12 C 0.006 3.994 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.275 1.275 16 H -0.280 1.280 17 H -0.264 1.264 18 C 0.041 3.959 19 C -0.035 4.035 20 H 0.099 0.901 21 C -0.084 4.084 22 C -0.126 4.126 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.122 4.122 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.132 0.868 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.003 0.997 33 H -0.023 1.023 34 H 0.265 0.735 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 2.133 19.093 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.324 3.676 4 O -0.418 6.418 5 C -0.092 4.092 6 H 0.152 0.848 7 C -0.069 4.069 8 N -0.247 5.247 9 C 0.074 3.926 10 C -0.562 4.562 11 H 0.076 0.924 12 C -0.193 4.193 13 N -0.573 5.573 14 Si 0.791 3.209 15 H -0.201 1.201 16 H -0.205 1.205 17 H -0.189 1.189 18 C -0.087 4.087 19 C -0.054 4.054 20 H 0.117 0.883 21 C -0.085 4.085 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.138 4.138 26 C -0.140 4.140 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.150 0.850 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.021 0.979 33 H -0.005 1.005 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.132 0.868 38 H 0.157 0.843 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.372 2.539 18.684 19.606 hybrid contribution 0.456 -0.616 -0.865 1.155 sum -4.917 1.923 17.819 18.585 Atomic orbital electron populations 1.23561 0.74710 1.05733 1.02482 1.86494 1.25147 1.32605 1.83662 1.23534 0.92004 0.81283 0.70735 1.90577 1.67417 1.37059 1.46704 1.21926 0.87453 0.98489 1.01373 0.84828 1.22918 1.00253 0.94056 0.89649 1.65515 1.44124 1.05539 1.09520 1.19517 0.88988 0.94646 0.89457 1.21388 0.98735 1.28045 1.08065 0.92415 1.25854 0.95306 0.98210 0.99893 1.70070 1.10123 1.46392 1.30671 0.85421 0.78204 0.78558 0.78685 1.20106 1.20488 1.18860 1.23198 0.96944 0.96538 0.92048 1.20822 0.97888 0.94478 0.92178 0.88281 1.19699 0.95564 0.97590 0.95610 1.21135 0.94673 1.00103 0.98546 1.21403 0.99973 0.98423 0.94280 1.21503 0.97045 0.95781 0.99792 1.21445 0.94731 1.00152 0.97519 1.21261 1.00472 0.97443 0.94822 0.92659 0.91203 0.84985 0.92612 0.90533 0.97854 1.00493 0.92607 0.90746 0.93773 0.86839 0.84296 0.83466 0.83614 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.36 -10.62 10.35 -51.42 -0.53 -11.15 16 3 C 0.48 15.74 7.18 71.24 0.51 16.25 16 4 O -0.53 -19.23 15.00 21.98 0.33 -18.90 16 5 C -0.07 -2.27 2.99 -10.65 -0.03 -2.31 16 6 H 0.13 3.49 7.36 -2.38 -0.02 3.47 16 7 C 0.06 2.27 5.67 86.40 0.49 2.76 16 8 N -0.52 -23.29 5.33 -885.32 -4.72 -28.01 16 9 C 0.20 10.75 4.59 85.56 0.39 11.14 16 10 C -0.52 -30.05 8.97 25.60 0.23 -29.82 16 11 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 12 C 0.01 0.32 5.46 84.65 0.46 0.79 16 13 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 14 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 18 C 0.04 1.52 5.90 86.45 0.51 2.03 16 19 C -0.03 -1.09 2.87 -10.65 -0.03 -1.12 16 20 H 0.10 3.30 6.25 -2.38 -0.01 3.29 16 21 C -0.08 -2.25 4.74 -19.87 -0.09 -2.35 16 22 C -0.13 -3.21 8.16 22.27 0.18 -3.03 16 23 C -0.12 -2.55 10.05 22.27 0.22 -2.32 16 24 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 25 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 26 C -0.12 -2.84 9.68 22.27 0.22 -2.63 16 27 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 28 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 29 H 0.13 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.06 2.09 7.76 -2.39 -0.02 2.07 16 31 H 0.08 3.09 7.68 -2.38 -0.02 3.07 16 32 H 0.00 0.19 8.08 -2.39 -0.02 0.18 16 33 H -0.02 -1.28 7.77 -2.39 -0.02 -1.29 16 34 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.04 1.64 6.66 -2.39 -0.02 1.63 16 37 H 0.11 3.05 7.67 -2.91 -0.02 3.02 16 38 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.13 2.76 7.97 -2.90 -0.02 2.74 16 Total: -1.00 -68.76 341.79 3.10 -65.66 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.01 Total: 14.41 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 4.70 Total: -12.84 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -4.43 Total: -83.67 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.20 Total: -30.06 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.76 3.10 -65.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451995601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.058 kcal (2) G-P(sol) polarization free energy of solvation -68.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.04 seconds