Wall clock time and date at job start Tue Mar 31 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34225 * 117.00358 * 2 1 4 4 O 1.20826 * 119.99599 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00006 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.28454 * 323.52109 * 5 3 2 7 7 C 1.54382 * 110.32002 * 201.39353 * 5 3 2 8 8 N 1.48565 * 104.59066 * 217.24756 * 7 5 3 9 9 C 1.46904 * 110.99570 * 159.04356 * 8 7 5 10 10 C 1.50699 * 109.47373 * 69.87311 * 9 8 7 11 11 H 1.08004 * 119.99912 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00071 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00296 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99859 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47047 * 60.00251 * 14 12 10 16 16 H 1.48505 * 109.46930 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47023 * 299.99953 * 14 12 10 18 18 C 1.48555 * 104.22270 * 39.48765 * 8 7 5 19 19 C 1.54264 * 110.32470 * 85.64955 * 5 3 2 20 20 H 1.08993 * 110.32265 * 237.78919 * 19 5 3 21 21 C 1.50699 * 110.32332 * 0.02562 * 19 5 3 22 22 C 1.38237 * 120.00211 * 69.85012 * 21 19 5 23 23 C 1.38231 * 119.99869 * 179.76419 * 22 21 19 24 24 C 1.38238 * 119.99949 * 0.48708 * 23 22 21 25 25 C 1.38226 * 119.99919 * 359.78972 * 24 23 22 26 26 C 1.38236 * 120.00510 * 359.95482 * 25 24 23 27 27 H 1.08992 * 109.47173 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46913 * 60.00063 * 1 2 3 29 29 H 1.09000 * 109.46698 * 300.00368 * 1 2 3 30 30 H 1.08991 * 110.41228 * 336.02758 * 7 5 3 31 31 H 1.09003 * 110.40860 * 98.47587 * 7 5 3 32 32 H 1.09004 * 109.47177 * 189.87593 * 9 8 7 33 33 H 1.09007 * 109.46820 * 309.87478 * 9 8 7 34 34 H 0.96999 * 120.00547 * 180.02562 * 13 12 10 35 35 H 1.09007 * 110.40984 * 79.29208 * 18 8 7 36 36 H 1.08995 * 110.40991 * 201.61439 * 18 8 7 37 37 H 1.08000 * 119.99782 * 359.97438 * 22 21 19 38 38 H 1.08001 * 120.00017 * 180.25314 * 23 22 21 39 39 H 1.08000 * 119.99664 * 179.76983 * 24 23 22 40 40 H 1.08007 * 119.99858 * 179.97438 * 25 24 23 41 41 H 1.07995 * 120.00109 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9870 0.4734 0.6069 7 6 4.0316 2.6488 0.5276 8 7 5.2185 2.9856 -0.3000 9 6 5.4807 4.4309 -0.2805 10 6 5.9730 4.8338 1.0857 11 1 6.0807 4.0904 1.8618 12 6 6.2869 6.1511 1.3445 13 7 6.1562 7.0563 0.3994 14 14 6.8977 6.6504 3.0378 15 1 8.1501 5.9154 3.3488 16 1 7.1639 8.1112 3.0572 17 1 5.8654 6.3213 4.0533 18 6 4.8527 2.5293 -1.6656 19 6 4.1067 1.1934 -1.4432 20 1 4.7939 0.3534 -1.5433 21 6 2.9683 1.0601 -2.4217 22 6 2.1187 2.1278 -2.6432 23 6 1.0774 2.0070 -3.5444 24 6 0.8798 0.8153 -4.2165 25 6 1.7260 -0.2541 -3.9907 26 6 2.7704 -0.1317 -3.0935 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 3.2482 3.3939 0.3899 31 1 4.3093 2.5776 1.5793 32 1 6.2386 4.6728 -1.0257 33 1 4.5613 4.9701 -0.5090 34 1 6.3774 7.9830 0.5814 35 1 4.1977 3.2559 -2.1465 36 1 5.7484 2.3703 -2.2659 37 1 2.2704 3.0573 -2.1148 38 1 0.4161 2.8425 -3.7205 39 1 0.0640 0.7198 -4.9178 40 1 1.5713 -1.1853 -4.5156 41 1 3.4318 -0.9672 -2.9174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451995602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:39 Heat of formation + Delta-G solvation = -49.852276 kcal Electronic energy + Delta-G solvation = -23702.129489 eV Core-core repulsion = 20354.123250 eV Total energy + Delta-G solvation = -3348.006239 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96704 -39.12365 -37.75854 -36.13281 -33.60554 -32.08245 -30.85563 -30.41547 -28.29974 -27.52186 -26.26934 -23.31572 -23.04506 -22.37687 -21.18032 -20.19862 -19.41568 -17.63489 -16.91960 -16.38452 -16.22282 -16.06688 -15.46295 -14.97010 -14.65754 -14.39193 -13.95794 -13.58044 -13.37697 -13.19715 -12.95116 -12.84690 -12.55003 -12.19165 -12.07827 -11.81672 -11.34380 -11.24037 -11.12195 -10.99658 -10.86954 -10.68336 -10.67307 -10.51422 -10.34391 -10.08566 -9.85179 -9.21148 -8.84298 -8.65184 -8.42199 -7.47034 -6.02031 -4.03722 1.34332 1.46060 2.42439 2.84020 3.35143 3.38842 3.41754 3.79379 4.42316 4.55490 4.74147 4.95413 5.00690 5.02658 5.08667 5.11353 5.18957 5.19576 5.25565 5.34902 5.46413 5.51288 5.56988 5.58106 5.68617 5.76494 6.02523 6.10856 6.26962 6.29564 6.43674 6.47940 6.49721 6.57232 6.62256 6.71160 7.02577 7.08799 7.27896 7.73010 7.91260 7.97447 8.12508 8.46516 9.02887 9.60542 11.09072 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023269 B = 0.004479 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.048828 B = 6249.392088 C = 6717.534109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.474 3.526 4 O -0.499 6.499 5 C -0.084 4.084 6 H 0.109 0.891 7 C 0.056 3.944 8 N -0.503 5.503 9 C 0.183 3.817 10 C -0.509 4.509 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.035 3.965 19 C -0.038 4.038 20 H 0.098 0.902 21 C -0.090 4.090 22 C -0.099 4.099 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.103 4.103 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.033 0.967 33 H -0.004 1.004 34 H 0.262 0.738 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.660 -16.261 -6.618 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.316 3.684 4 O -0.386 6.386 5 C -0.104 4.104 6 H 0.128 0.872 7 C -0.073 4.073 8 N -0.228 5.228 9 C 0.058 3.942 10 C -0.547 4.547 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.093 4.093 19 C -0.057 4.057 20 H 0.116 0.884 21 C -0.090 4.090 22 C -0.117 4.117 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.121 4.121 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.051 0.949 33 H 0.014 0.986 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.363 -15.992 -6.450 20.118 hybrid contribution -0.676 0.908 0.548 1.258 sum -11.039 -15.084 -5.902 19.601 Atomic orbital electron populations 1.23161 0.77160 1.03059 1.02288 1.86510 1.22760 1.33792 1.84303 1.23547 0.91961 0.81277 0.71601 1.90648 1.66866 1.36201 1.44889 1.22042 0.86668 1.02830 0.98843 0.87236 1.22988 0.93374 0.91546 0.99364 1.65580 1.32113 1.20861 1.04212 1.19896 0.95943 0.80033 0.98319 1.21070 1.43767 0.93132 0.96767 0.91912 1.24979 0.95783 0.96509 0.97235 1.69944 1.48941 1.02069 1.32815 0.86555 0.79364 0.77242 0.84220 1.20126 1.21359 1.20259 1.23291 0.98569 0.93361 0.94108 1.20920 0.94164 1.00677 0.89914 0.88396 1.19898 0.96807 0.94170 0.98156 1.21283 0.94326 0.98953 0.97143 1.21121 0.98106 0.97749 0.96942 1.21114 0.99555 0.93559 0.99995 1.21056 0.95792 0.98654 0.98958 1.21010 0.97957 0.96823 0.96303 0.88632 0.92187 0.92190 0.91982 0.89554 0.94868 0.98585 0.92841 0.93688 0.90184 0.85419 0.86293 0.86486 0.86331 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.36 -4.91 10.50 -39.24 -0.41 -5.33 16 3 C 0.47 7.50 4.69 36.01 0.17 7.67 16 4 O -0.50 -9.17 13.52 -18.75 -0.25 -9.42 16 5 C -0.08 -1.31 3.54 -90.39 -0.32 -1.63 16 6 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 7 C 0.06 1.09 5.44 -2.18 -0.01 1.08 16 8 N -0.50 -10.73 5.36 -231.25 -1.24 -11.96 16 9 C 0.18 4.79 4.57 -4.97 -0.02 4.76 16 10 C -0.51 -14.31 8.82 -34.44 -0.30 -14.62 16 11 H 0.06 1.73 7.61 -52.48 -0.40 1.33 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 14 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.04 0.62 5.90 -2.06 -0.01 0.61 16 19 C -0.04 -0.55 3.29 -90.26 -0.30 -0.85 16 20 H 0.10 1.24 7.98 -51.93 -0.41 0.82 16 21 C -0.09 -1.26 3.68 -104.62 -0.38 -1.65 16 22 C -0.10 -1.50 6.48 -39.58 -0.26 -1.76 16 23 C -0.12 -1.59 10.05 -39.58 -0.40 -1.98 16 24 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 25 C -0.13 -1.37 10.05 -39.59 -0.40 -1.77 16 26 C -0.10 -1.23 9.68 -39.58 -0.38 -1.61 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.06 1.36 6.48 -51.93 -0.34 1.02 16 31 H 0.09 1.71 7.94 -51.93 -0.41 1.29 16 32 H 0.03 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.00 -0.10 7.88 -51.93 -0.41 -0.51 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.04 0.85 5.98 -51.93 -0.31 0.53 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.13 2.23 6.43 -52.49 -0.34 1.89 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 41 H 0.12 1.22 8.01 -52.49 -0.42 0.80 16 LS Contribution 335.39 15.07 5.05 5.05 Total: -1.00 -31.60 335.39 -9.16 -40.76 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.98 Total: 0.82 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.05 Total: -10.55 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.50 Total: -38.08 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.67 Total: -14.75 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.60 -9.16 -40.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451995602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.093 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds