Wall clock time and date at job start Tue Mar 31 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34225 * 117.00358 * 2 1 4 4 O 1.20826 * 119.99599 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00006 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.28454 * 323.52109 * 5 3 2 7 7 C 1.54382 * 110.32002 * 201.39353 * 5 3 2 8 8 N 1.48565 * 104.59066 * 217.24756 * 7 5 3 9 9 C 1.46904 * 110.99570 * 159.04356 * 8 7 5 10 10 C 1.50699 * 109.47373 * 69.87311 * 9 8 7 11 11 H 1.08004 * 119.99912 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00071 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00296 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99859 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47047 * 60.00251 * 14 12 10 16 16 H 1.48505 * 109.46930 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47023 * 299.99953 * 14 12 10 18 18 C 1.48555 * 104.22270 * 39.48765 * 8 7 5 19 19 C 1.54264 * 110.32470 * 85.64955 * 5 3 2 20 20 H 1.08993 * 110.32265 * 237.78919 * 19 5 3 21 21 C 1.50699 * 110.32332 * 0.02562 * 19 5 3 22 22 C 1.38237 * 120.00211 * 69.85012 * 21 19 5 23 23 C 1.38231 * 119.99869 * 179.76419 * 22 21 19 24 24 C 1.38238 * 119.99949 * 0.48708 * 23 22 21 25 25 C 1.38226 * 119.99919 * 359.78972 * 24 23 22 26 26 C 1.38236 * 120.00510 * 359.95482 * 25 24 23 27 27 H 1.08992 * 109.47173 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46913 * 60.00063 * 1 2 3 29 29 H 1.09000 * 109.46698 * 300.00368 * 1 2 3 30 30 H 1.08991 * 110.41228 * 336.02758 * 7 5 3 31 31 H 1.09003 * 110.40860 * 98.47587 * 7 5 3 32 32 H 1.09004 * 109.47177 * 189.87593 * 9 8 7 33 33 H 1.09007 * 109.46820 * 309.87478 * 9 8 7 34 34 H 0.96999 * 120.00547 * 180.02562 * 13 12 10 35 35 H 1.09007 * 110.40984 * 79.29208 * 18 8 7 36 36 H 1.08995 * 110.40991 * 201.61439 * 18 8 7 37 37 H 1.08000 * 119.99782 * 359.97438 * 22 21 19 38 38 H 1.08001 * 120.00017 * 180.25314 * 23 22 21 39 39 H 1.08000 * 119.99664 * 179.76983 * 24 23 22 40 40 H 1.08007 * 119.99858 * 179.97438 * 25 24 23 41 41 H 1.07995 * 120.00109 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9870 0.4734 0.6069 7 6 4.0316 2.6488 0.5276 8 7 5.2185 2.9856 -0.3000 9 6 5.4807 4.4309 -0.2805 10 6 5.9730 4.8338 1.0857 11 1 6.0807 4.0904 1.8618 12 6 6.2869 6.1511 1.3445 13 7 6.1562 7.0563 0.3994 14 14 6.8977 6.6504 3.0378 15 1 8.1501 5.9154 3.3488 16 1 7.1639 8.1112 3.0572 17 1 5.8654 6.3213 4.0533 18 6 4.8527 2.5293 -1.6656 19 6 4.1067 1.1934 -1.4432 20 1 4.7939 0.3534 -1.5433 21 6 2.9683 1.0601 -2.4217 22 6 2.1187 2.1278 -2.6432 23 6 1.0774 2.0070 -3.5444 24 6 0.8798 0.8153 -4.2165 25 6 1.7260 -0.2541 -3.9907 26 6 2.7704 -0.1317 -3.0935 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 3.2482 3.3939 0.3899 31 1 4.3093 2.5776 1.5793 32 1 6.2386 4.6728 -1.0257 33 1 4.5613 4.9701 -0.5090 34 1 6.3774 7.9830 0.5814 35 1 4.1977 3.2559 -2.1465 36 1 5.7484 2.3703 -2.2659 37 1 2.2704 3.0573 -2.1148 38 1 0.4161 2.8425 -3.7205 39 1 0.0640 0.7198 -4.9178 40 1 1.5713 -1.1853 -4.5156 41 1 3.4318 -0.9672 -2.9174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451995602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:38 Heat of formation + Delta-G solvation = -69.390894 kcal Electronic energy + Delta-G solvation = -23702.976747 eV Core-core repulsion = 20354.123250 eV Total energy + Delta-G solvation = -3348.853497 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.20203 -40.23257 -39.08327 -37.38240 -35.42441 -33.82066 -31.81481 -31.72754 -29.80323 -28.63798 -27.97815 -25.07019 -24.23926 -23.43335 -22.57356 -21.74636 -20.64793 -18.86522 -18.42396 -18.03270 -17.56939 -17.13875 -16.81234 -16.48972 -15.96826 -15.64233 -15.45728 -15.03292 -14.56351 -14.43225 -14.30157 -14.14626 -13.76773 -13.75626 -13.51487 -13.02065 -12.99812 -12.74011 -12.59937 -12.48918 -12.44278 -12.13926 -12.08458 -11.77679 -11.74159 -11.68812 -11.33453 -11.27586 -10.63288 -9.80619 -9.65823 -9.29707 -8.22952 -6.33849 0.37173 0.49871 1.19123 1.40022 1.44008 1.51704 1.70332 2.39169 2.81592 3.09893 3.23234 3.41016 3.71715 3.77085 3.96440 4.02829 4.12880 4.25126 4.29359 4.31048 4.32232 4.33895 4.39041 4.59730 4.67898 4.68949 4.77819 4.82739 4.89685 5.00394 5.05536 5.10702 5.15734 5.18743 5.37786 5.56537 5.59933 5.61446 5.69560 5.90986 6.08362 6.12098 6.40615 6.76479 6.80707 7.36030 8.88750 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023269 B = 0.004479 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.048828 B = 6249.392088 C = 6717.534109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.350 6.350 3 C 0.480 3.520 4 O -0.534 6.534 5 C -0.078 4.078 6 H 0.142 0.858 7 C 0.057 3.943 8 N -0.505 5.505 9 C 0.200 3.800 10 C -0.526 4.526 11 H 0.066 0.934 12 C 0.001 3.999 13 N -0.936 5.936 14 Si 0.972 3.028 15 H -0.263 1.263 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.032 3.968 19 C -0.025 4.025 20 H 0.132 0.868 21 C -0.104 4.104 22 C -0.122 4.122 23 C -0.137 4.137 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.099 4.099 27 H 0.135 0.865 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.027 0.973 31 H 0.081 0.919 32 H 0.008 0.992 33 H -0.042 1.042 34 H 0.265 0.735 35 H 0.024 0.976 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.146 0.854 40 H 0.155 0.845 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.922 -19.868 -6.645 23.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.266 6.266 3 C 0.324 3.676 4 O -0.423 6.423 5 C -0.097 4.097 6 H 0.160 0.840 7 C -0.071 4.071 8 N -0.228 5.228 9 C 0.074 3.926 10 C -0.565 4.565 11 H 0.084 0.916 12 C -0.197 4.197 13 N -0.576 5.576 14 Si 0.796 3.204 15 H -0.188 1.188 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.096 4.096 19 C -0.044 4.044 20 H 0.150 0.850 21 C -0.104 4.104 22 C -0.140 4.140 23 C -0.155 4.155 24 C -0.136 4.136 25 C -0.137 4.137 26 C -0.117 4.117 27 H 0.153 0.847 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.026 0.974 33 H -0.024 1.024 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.138 0.862 39 H 0.164 0.836 40 H 0.173 0.827 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.633 -19.639 -6.483 23.255 hybrid contribution -0.703 1.999 0.461 2.168 sum -11.335 -17.641 -6.022 21.816 Atomic orbital electron populations 1.23459 0.75366 1.05479 1.01833 1.86481 1.24396 1.32065 1.83689 1.23466 0.91932 0.81438 0.70752 1.90650 1.67571 1.37564 1.46520 1.21972 0.87073 1.00759 0.99929 0.84031 1.22855 0.91719 0.93498 0.99062 1.65462 1.33379 1.17226 1.06753 1.19508 0.93250 0.82864 0.97020 1.21410 1.43864 0.93679 0.97499 0.91567 1.25964 0.95723 0.96419 1.01624 1.70088 1.49824 1.02487 1.35233 0.85398 0.79188 0.77008 0.78813 1.18782 1.20822 1.19378 1.23368 0.99139 0.94971 0.92087 1.20899 0.94710 0.99342 0.89453 0.84971 1.19839 0.96564 0.94953 0.99038 1.21070 0.96336 0.98128 0.98474 1.21256 0.97830 0.99177 0.97225 1.21455 1.00176 0.92537 0.99424 1.21496 0.94529 0.99678 0.98020 1.21331 0.98540 0.96360 0.95480 0.84654 0.92975 0.92479 0.95439 0.90033 0.97386 1.02423 0.92645 0.95812 0.89118 0.89640 0.86246 0.83619 0.82719 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.82 16 2 O -0.35 -8.89 10.50 -51.37 -0.54 -9.42 16 3 C 0.48 15.12 4.69 71.24 0.33 15.45 16 4 O -0.53 -20.57 13.52 21.96 0.30 -20.27 16 5 C -0.08 -2.38 3.54 -10.64 -0.04 -2.41 16 6 H 0.14 3.43 8.14 -2.39 -0.02 3.41 16 7 C 0.06 2.34 5.44 86.45 0.47 2.81 16 8 N -0.50 -22.51 5.36 -885.54 -4.75 -27.26 16 9 C 0.20 11.19 4.57 85.56 0.39 11.58 16 10 C -0.53 -30.76 8.82 25.60 0.23 -30.53 16 11 H 0.07 3.74 7.61 -2.91 -0.02 3.71 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.94 -58.13 13.29 21.45 0.28 -57.84 16 14 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 15 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 C 0.03 1.20 5.90 86.53 0.51 1.71 16 19 C -0.03 -0.71 3.29 -10.56 -0.03 -0.75 16 20 H 0.13 2.85 7.98 -2.39 -0.02 2.83 16 21 C -0.10 -2.79 3.68 -19.87 -0.07 -2.86 16 22 C -0.12 -3.84 6.48 22.27 0.14 -3.69 16 23 C -0.14 -3.59 10.05 22.27 0.22 -3.37 16 24 C -0.12 -2.32 10.05 22.27 0.22 -2.09 16 25 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 26 C -0.10 -2.00 9.68 22.27 0.22 -1.79 16 27 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.12 8.13 -2.39 -0.02 1.10 16 29 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 30 H 0.03 1.31 6.48 -2.39 -0.02 1.30 16 31 H 0.08 3.34 7.94 -2.39 -0.02 3.32 16 32 H 0.01 0.48 8.13 -2.38 -0.02 0.46 16 33 H -0.04 -2.60 7.88 -2.38 -0.02 -2.62 16 34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.02 0.98 5.98 -2.38 -0.01 0.96 16 36 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.09 3.37 6.43 -2.91 -0.02 3.35 16 38 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 40 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.15 2.18 8.01 -2.91 -0.02 2.15 16 Total: -1.00 -73.34 335.39 2.81 -70.53 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.01 Total: 12.48 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 4.48 Total: -15.46 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -4.46 Total: -85.10 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.24 Total: -29.70 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.34 2.81 -70.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451995602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.139 kcal (2) G-P(sol) polarization free energy of solvation -73.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds