Wall clock time and date at job start Tue Mar 31 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99852 * 2 1 4 4 C 1.53000 * 109.47091 * 180.02562 * 3 2 1 5 5 S 1.81400 * 109.47315 * 179.97438 * 4 3 2 6 6 C 1.81393 * 103.00148 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47440 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47231 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.46697 * 180.02562 * 8 7 6 10 10 C 1.48720 * 111.01831 * 74.48907 * 9 8 7 11 11 C 1.54381 * 104.51692 * 158.96284 * 10 9 8 12 12 C 1.54257 * 105.14978 * 336.27274 * 11 10 9 13 13 O 1.42906 * 110.32239 * 240.94794 * 12 11 10 14 14 C 1.50697 * 110.32628 * 118.84329 * 12 11 10 15 15 H 1.07995 * 120.00073 * 241.44522 * 14 12 11 16 16 C 1.37883 * 119.99811 * 61.45328 * 14 12 11 17 17 N 1.31514 * 119.99933 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99722 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47538 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46864 * 119.99931 * 18 16 14 21 21 H 1.48499 * 109.47368 * 239.99818 * 18 16 14 22 22 C 1.48567 * 110.99718 * 189.99889 * 9 8 7 23 23 H 1.08997 * 109.47206 * 59.99838 * 1 2 3 24 24 H 1.08999 * 109.46950 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47247 * 300.00209 * 1 2 3 26 26 H 1.09000 * 109.47684 * 60.00044 * 3 2 1 27 27 H 1.09001 * 109.46668 * 299.99791 * 3 2 1 28 28 H 1.08994 * 109.47520 * 59.99065 * 4 3 2 29 29 H 1.09006 * 109.46881 * 299.99741 * 4 3 2 30 30 H 1.09001 * 109.47458 * 59.99944 * 6 5 4 31 31 H 1.09002 * 109.47380 * 300.00226 * 6 5 4 32 32 H 1.09001 * 109.46812 * 59.99583 * 7 6 5 33 33 H 1.08997 * 109.46710 * 300.00142 * 7 6 5 34 34 H 1.08997 * 109.47422 * 59.99616 * 8 7 6 35 35 H 1.08999 * 109.46632 * 299.99620 * 8 7 6 36 36 H 1.09004 * 110.38960 * 40.24251 * 10 9 8 37 37 H 1.08996 * 110.50963 * 277.74694 * 10 9 8 38 38 H 1.09002 * 110.32526 * 217.32092 * 11 10 9 39 39 H 1.08998 * 110.32190 * 95.21733 * 11 10 9 40 40 H 0.96695 * 113.99929 * 298.55053 * 13 12 11 41 41 H 0.97002 * 119.99478 * 180.02562 * 17 16 14 42 42 H 1.08999 * 110.41133 * 82.17552 * 22 9 8 43 43 H 1.09001 * 110.41003 * 319.73948 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 16 4.2733 2.8419 -0.0014 6 6 6.0539 2.4958 -0.0013 7 6 6.8298 3.8145 -0.0026 8 6 8.3317 3.5225 -0.0031 9 7 9.0766 4.7886 -0.0037 10 6 9.0276 5.4369 1.3338 11 6 10.2359 6.3979 1.3426 12 6 11.2189 5.8189 0.3043 13 8 12.4565 5.4747 0.9306 14 6 11.4531 6.8115 -0.8052 15 1 11.1847 6.5598 -1.8205 16 6 12.0103 8.0410 -0.5239 17 7 12.3378 8.3473 0.7124 18 14 12.3012 9.2711 -1.8993 19 1 11.8504 8.6881 -3.1885 20 1 11.5347 10.5128 -1.6231 21 1 13.7491 9.5908 -1.9795 22 6 10.5238 4.5548 -0.2451 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6887 1.8465 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8568 0.6439 -0.8907 29 1 3.8574 0.6437 0.8892 30 1 6.3126 1.9217 -0.8910 31 1 6.3126 1.9224 0.8889 32 1 6.5713 4.3890 0.8869 33 1 6.5711 4.3873 -0.8930 34 1 8.5899 2.9481 -0.8928 35 1 8.5907 2.9494 0.8871 36 1 9.1299 4.6905 2.1216 37 1 8.0984 5.9936 1.4546 38 1 10.6966 6.4178 2.3302 39 1 9.9241 7.4007 1.0507 40 1 12.9158 6.2247 1.3325 41 1 12.7294 9.2124 0.9102 42 1 10.7186 4.4471 -1.3121 43 1 10.8611 3.6702 0.2950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592154174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:23 Heat of formation + Delta-G solvation = -101.948526 kcal Electronic energy + Delta-G solvation = -20562.011161 eV Core-core repulsion = 17347.189811 eV Total energy + Delta-G solvation = -3214.821351 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.44920 -38.32142 -35.48537 -33.26516 -32.06591 -31.96754 -29.43312 -27.94779 -26.90139 -25.71391 -24.08684 -23.27975 -21.55878 -20.10736 -19.33124 -17.17172 -16.99470 -16.59921 -16.31643 -15.54864 -15.36281 -15.12983 -14.81775 -14.53117 -14.20188 -13.81954 -13.69717 -13.28786 -12.90366 -12.40036 -12.30421 -12.12103 -12.09070 -11.84434 -11.69924 -11.44715 -11.23802 -11.01273 -10.86639 -10.62419 -10.44273 -10.36006 -10.24686 -10.16345 -10.13758 -9.88222 -9.00846 -8.54066 -8.09624 -7.89848 -7.82464 -6.13555 -4.18754 1.25726 2.33876 3.27092 3.35432 3.40893 3.49679 4.37794 4.42497 4.48868 4.53091 4.81210 4.91336 4.92101 4.97179 5.07164 5.14877 5.23397 5.29801 5.30153 5.36840 5.40488 5.56464 5.74659 5.79996 5.95634 6.07544 6.20080 6.25023 6.28241 6.44141 6.53649 6.65142 6.89335 7.08261 7.24401 7.58032 7.68742 7.72963 7.89063 8.25157 8.84070 9.45466 9.54311 10.94044 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036564 B = 0.002372 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.599988 B =11801.831081 C =12136.023466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.079 3.921 4 C -0.093 4.093 5 S -0.248 6.248 6 C -0.077 4.077 7 C -0.097 4.097 8 C 0.051 3.949 9 N -0.501 5.501 10 C 0.032 3.968 11 C -0.121 4.121 12 C 0.248 3.752 13 O -0.595 6.595 14 C -0.516 4.516 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.901 5.901 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.054 3.946 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.028 0.972 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.382 0.618 41 H 0.265 0.735 42 H 0.077 0.923 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.309 -12.961 0.581 22.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C 0.001 3.999 4 C -0.242 4.242 5 S -0.022 6.022 6 C -0.226 4.226 7 C -0.136 4.136 8 C -0.080 4.080 9 N -0.225 5.225 10 C -0.096 4.096 11 C -0.159 4.159 12 C 0.208 3.792 13 O -0.404 6.404 14 C -0.554 4.554 15 H 0.081 0.919 16 C -0.137 4.137 17 N -0.542 5.542 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.074 4.074 23 H 0.062 0.938 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.233 0.767 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -19.057 -12.289 0.053 22.676 hybrid contribution 0.988 -0.199 0.197 1.027 sum -18.069 -12.488 0.250 21.966 Atomic orbital electron populations 1.22765 0.80441 1.02948 1.00272 1.87858 1.20137 1.27587 1.95544 1.22113 0.91265 0.84933 1.01568 1.23197 0.97267 0.97544 1.06143 1.86867 1.05928 1.11208 1.98180 1.23400 0.91692 1.02484 1.05040 1.21253 0.93784 0.94326 1.04217 1.22188 0.92877 0.92423 1.00494 1.65289 1.09857 1.19568 1.27784 1.23212 1.00203 0.97186 0.88990 1.22850 0.94679 0.99137 0.99282 1.19271 0.81275 0.89172 0.89500 1.86080 1.37617 1.40079 1.76647 1.21681 1.40184 0.99064 0.94519 0.91925 1.25018 0.94861 0.98036 0.95776 1.69708 1.43394 1.23001 1.18050 0.86419 0.77711 0.80841 0.82300 1.19671 1.20999 1.21046 1.22976 0.86211 0.97576 1.00614 0.93822 0.89396 0.93842 0.92213 0.92191 0.89268 0.89315 0.89827 0.90067 0.90973 0.89992 0.91137 0.95090 0.95378 0.91547 0.93135 0.90618 0.76738 0.92560 0.90510 0.95180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.62 10.70 -35.23 -0.38 -4.00 16 3 C 0.08 0.67 5.95 37.16 0.22 0.89 16 4 C -0.09 -0.84 6.31 37.16 0.23 -0.61 16 5 S -0.25 -2.72 21.74 -107.50 -2.34 -5.06 16 6 C -0.08 -0.82 5.94 37.16 0.22 -0.60 16 7 C -0.10 -1.26 5.34 -26.73 -0.14 -1.41 16 8 C 0.05 0.77 4.83 -3.82 -0.02 0.75 16 9 N -0.50 -9.71 5.34 -229.83 -1.23 -10.93 16 10 C 0.03 0.62 5.93 -2.09 -0.01 0.61 16 11 C -0.12 -2.83 5.55 -25.35 -0.14 -2.97 16 12 C 0.25 6.22 1.05 -90.39 -0.10 6.13 16 13 O -0.60 -15.63 12.94 -35.23 -0.46 -16.09 16 14 C -0.52 -14.04 8.10 -34.44 -0.28 -14.32 16 15 H 0.06 1.72 7.53 -52.49 -0.40 1.33 16 16 C 0.06 1.72 5.02 -17.82 -0.09 1.63 16 17 N -0.90 -24.36 10.81 55.43 0.60 -23.76 16 18 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.05 1.18 5.74 -2.18 -0.01 1.16 16 23 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.07 0.99 7.47 -51.93 -0.39 0.60 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.03 0.45 7.77 -51.93 -0.40 0.05 16 36 H 0.03 0.52 7.75 -51.93 -0.40 0.11 16 37 H 0.07 1.21 7.86 -51.93 -0.41 0.80 16 38 H 0.05 1.19 7.98 -51.93 -0.41 0.78 16 39 H 0.08 1.94 7.23 -51.93 -0.38 1.57 16 40 H 0.38 10.14 7.32 45.56 0.33 10.47 16 41 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.08 1.69 7.67 -51.93 -0.40 1.29 16 43 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -28.55 357.49 -9.48 -38.03 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.05 Total: 7.77 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 1.00 Total: -7.42 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: -0.63 Total: -34.69 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.83 Total: -20.09 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.34 Total: -5.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.55 -9.48 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.922 kcal (2) G-P(sol) polarization free energy of solvation -28.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds