Wall clock time and date at job start Tue Mar 31 2020 05:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99852 * 2 1 4 4 C 1.53000 * 109.47091 * 180.02562 * 3 2 1 5 5 S 1.81400 * 109.47315 * 179.97438 * 4 3 2 6 6 C 1.81393 * 103.00148 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47440 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47231 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.46697 * 180.02562 * 8 7 6 10 10 C 1.48720 * 111.01831 * 74.48907 * 9 8 7 11 11 C 1.54381 * 104.51692 * 158.96284 * 10 9 8 12 12 C 1.54257 * 105.14978 * 336.27274 * 11 10 9 13 13 O 1.42906 * 110.32239 * 240.94794 * 12 11 10 14 14 C 1.50697 * 110.32628 * 118.84329 * 12 11 10 15 15 H 1.07995 * 120.00073 * 241.44522 * 14 12 11 16 16 C 1.37883 * 119.99811 * 61.45328 * 14 12 11 17 17 N 1.31514 * 119.99933 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99722 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47538 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46864 * 119.99931 * 18 16 14 21 21 H 1.48499 * 109.47368 * 239.99818 * 18 16 14 22 22 C 1.48567 * 110.99718 * 189.99889 * 9 8 7 23 23 H 1.08997 * 109.47206 * 59.99838 * 1 2 3 24 24 H 1.08999 * 109.46950 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47247 * 300.00209 * 1 2 3 26 26 H 1.09000 * 109.47684 * 60.00044 * 3 2 1 27 27 H 1.09001 * 109.46668 * 299.99791 * 3 2 1 28 28 H 1.08994 * 109.47520 * 59.99065 * 4 3 2 29 29 H 1.09006 * 109.46881 * 299.99741 * 4 3 2 30 30 H 1.09001 * 109.47458 * 59.99944 * 6 5 4 31 31 H 1.09002 * 109.47380 * 300.00226 * 6 5 4 32 32 H 1.09001 * 109.46812 * 59.99583 * 7 6 5 33 33 H 1.08997 * 109.46710 * 300.00142 * 7 6 5 34 34 H 1.08997 * 109.47422 * 59.99616 * 8 7 6 35 35 H 1.08999 * 109.46632 * 299.99620 * 8 7 6 36 36 H 1.09004 * 110.38960 * 40.24251 * 10 9 8 37 37 H 1.08996 * 110.50963 * 277.74694 * 10 9 8 38 38 H 1.09002 * 110.32526 * 217.32092 * 11 10 9 39 39 H 1.08998 * 110.32190 * 95.21733 * 11 10 9 40 40 H 0.96695 * 113.99929 * 298.55053 * 13 12 11 41 41 H 0.97002 * 119.99478 * 180.02562 * 17 16 14 42 42 H 1.08999 * 110.41133 * 82.17552 * 22 9 8 43 43 H 1.09001 * 110.41003 * 319.73948 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 16 4.2733 2.8419 -0.0014 6 6 6.0539 2.4958 -0.0013 7 6 6.8298 3.8145 -0.0026 8 6 8.3317 3.5225 -0.0031 9 7 9.0766 4.7886 -0.0037 10 6 9.0276 5.4369 1.3338 11 6 10.2359 6.3979 1.3426 12 6 11.2189 5.8189 0.3043 13 8 12.4565 5.4747 0.9306 14 6 11.4531 6.8115 -0.8052 15 1 11.1847 6.5598 -1.8205 16 6 12.0103 8.0410 -0.5239 17 7 12.3378 8.3473 0.7124 18 14 12.3012 9.2711 -1.8993 19 1 11.8504 8.6881 -3.1885 20 1 11.5347 10.5128 -1.6231 21 1 13.7491 9.5908 -1.9795 22 6 10.5238 4.5548 -0.2451 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6887 1.8465 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8568 0.6439 -0.8907 29 1 3.8574 0.6437 0.8892 30 1 6.3126 1.9217 -0.8910 31 1 6.3126 1.9224 0.8889 32 1 6.5713 4.3890 0.8869 33 1 6.5711 4.3873 -0.8930 34 1 8.5899 2.9481 -0.8928 35 1 8.5907 2.9494 0.8871 36 1 9.1299 4.6905 2.1216 37 1 8.0984 5.9936 1.4546 38 1 10.6966 6.4178 2.3302 39 1 9.9241 7.4007 1.0507 40 1 12.9158 6.2247 1.3325 41 1 12.7294 9.2124 0.9102 42 1 10.7186 4.4471 -1.3121 43 1 10.8611 3.6702 0.2950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592154174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:21 Heat of formation + Delta-G solvation = -121.738820 kcal Electronic energy + Delta-G solvation = -20562.869333 eV Core-core repulsion = 17347.189811 eV Total energy + Delta-G solvation = -3215.679522 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.12371 -38.93030 -37.13908 -34.64279 -34.14133 -32.61633 -31.00965 -29.73406 -27.47003 -27.20124 -25.66240 -24.13098 -22.79013 -21.59343 -21.17507 -19.02673 -17.82699 -17.35657 -17.22199 -16.90718 -16.66571 -16.47671 -16.03267 -15.89403 -15.66339 -15.04765 -14.79857 -14.51366 -14.24732 -14.05207 -13.58901 -13.34148 -13.25621 -13.10675 -12.88008 -12.67340 -12.59546 -12.44069 -12.30622 -12.27344 -12.17637 -11.96513 -11.77285 -11.60972 -10.99938 -10.91019 -10.72834 -10.59115 -10.11293 -9.34225 -8.73073 -8.18176 -6.30492 0.47076 1.40090 1.43252 1.54281 1.54667 2.41692 2.91797 2.96867 3.15762 3.83788 3.84593 3.89490 3.97474 4.03390 4.10080 4.32361 4.33257 4.35358 4.45424 4.48224 4.48652 4.49115 4.58451 4.66153 4.66845 4.71339 4.72712 4.83807 4.86275 5.02495 5.10900 5.22816 5.29507 5.39011 5.67383 5.79339 5.98185 6.09025 6.18969 6.28725 6.74613 7.37349 7.45263 8.87904 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036564 B = 0.002372 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.599988 B =11801.831081 C =12136.023466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.080 3.920 4 C -0.082 4.082 5 S -0.279 6.279 6 C -0.068 4.068 7 C -0.087 4.087 8 C 0.051 3.949 9 N -0.511 5.511 10 C 0.042 3.958 11 C -0.114 4.114 12 C 0.229 3.771 13 O -0.602 6.602 14 C -0.539 4.539 15 H 0.051 0.949 16 C 0.023 3.977 17 N -0.916 5.916 18 Si 0.958 3.042 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.062 3.938 23 H 0.051 0.949 24 H 0.100 0.900 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.046 0.954 40 H 0.377 0.623 41 H 0.267 0.733 42 H 0.070 0.930 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.598 -13.964 0.319 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.002 3.998 4 C -0.230 4.230 5 S -0.052 6.052 6 C -0.216 4.216 7 C -0.126 4.126 8 C -0.078 4.078 9 N -0.236 5.236 10 C -0.086 4.086 11 C -0.153 4.153 12 C 0.189 3.811 13 O -0.411 6.411 14 C -0.577 4.577 15 H 0.070 0.930 16 C -0.176 4.176 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.205 1.205 22 C -0.066 4.066 23 H 0.070 0.930 24 H 0.119 0.881 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.226 0.774 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -20.361 -13.305 -0.207 24.323 hybrid contribution 1.351 0.087 0.287 1.384 sum -19.009 -13.218 0.080 23.153 Atomic orbital electron populations 1.22965 0.78922 1.04122 1.01059 1.87819 1.21877 1.27842 1.95682 1.22092 0.90944 0.84916 1.01805 1.23160 0.97479 0.95858 1.06525 1.86975 1.06645 1.13347 1.98272 1.23285 0.90927 1.01169 1.06258 1.21094 0.92683 0.95483 1.03322 1.22278 0.93400 0.90590 1.01577 1.65250 1.08485 1.22187 1.27691 1.23108 0.98887 0.96827 0.89732 1.22636 0.95998 0.98554 0.98072 1.19563 0.81232 0.90722 0.89575 1.86073 1.38401 1.39879 1.76705 1.21885 1.40988 1.00191 0.94634 0.93036 1.25685 0.94621 0.99477 0.97836 1.69784 1.43317 1.23358 1.19188 0.85513 0.77656 0.78722 0.79722 1.19680 1.20569 1.20536 1.22792 0.87599 0.96121 1.00044 0.93047 0.88113 0.93050 0.91979 0.91992 0.88875 0.88893 0.88640 0.88842 0.91619 0.91187 0.90011 0.93942 0.93744 0.90087 0.94079 0.93519 0.77399 0.92359 0.91130 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -6.98 10.70 -148.98 -1.59 -8.58 16 3 C 0.08 1.24 5.95 71.98 0.43 1.67 16 4 C -0.08 -1.33 6.31 71.98 0.45 -0.87 16 5 S -0.28 -5.65 21.74 -56.49 -1.23 -6.88 16 6 C -0.07 -1.28 5.94 71.98 0.43 -0.85 16 7 C -0.09 -2.09 5.34 30.60 0.16 -1.93 16 8 C 0.05 1.43 4.83 86.30 0.42 1.85 16 9 N -0.51 -19.16 5.34 -881.04 -4.70 -23.86 16 10 C 0.04 1.59 5.93 86.42 0.51 2.11 16 11 C -0.11 -5.37 5.55 31.49 0.17 -5.19 16 12 C 0.23 11.57 1.05 -10.65 -0.01 11.56 16 13 O -0.60 -32.00 12.94 -148.98 -1.93 -33.93 16 14 C -0.54 -29.67 8.10 25.60 0.21 -29.46 16 15 H 0.05 2.87 7.53 -2.91 -0.02 2.85 16 16 C 0.02 1.25 5.02 84.66 0.43 1.68 16 17 N -0.92 -50.01 10.81 21.45 0.23 -49.77 16 18 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 C 0.06 2.69 5.74 86.45 0.50 3.19 16 23 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.67 7.47 -2.39 -0.02 1.66 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 2.10 8.08 -2.39 -0.02 2.08 16 35 H 0.04 1.11 7.77 -2.39 -0.02 1.09 16 36 H 0.04 1.54 7.75 -2.38 -0.02 1.52 16 37 H 0.08 2.83 7.86 -2.39 -0.02 2.81 16 38 H 0.04 1.96 7.98 -2.39 -0.02 1.94 16 39 H 0.05 2.43 7.23 -2.39 -0.02 2.41 16 40 H 0.38 20.42 7.32 -74.06 -0.54 19.88 16 41 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 42 H 0.07 3.08 7.67 -2.39 -0.02 3.07 16 43 H 0.04 1.48 7.94 -2.39 -0.02 1.47 16 Total: -1.00 -60.41 357.49 -1.83 -62.23 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.43 Total: 30.09 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 4.94 Total: -14.74 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -4.47 Total: -73.64 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -3.52 Total: -42.51 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -5.65 SS G_CDS: -1.23 Total: -6.88 kcal Total: -60.41 -1.83 -62.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592154174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.507 kcal (2) G-P(sol) polarization free energy of solvation -60.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds