Wall clock time and date at job start Tue Mar 31 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99842 * 2 1 4 4 H 1.09000 * 109.47563 * 23.51415 * 3 2 1 5 5 C 1.53001 * 109.47120 * 143.51677 * 3 2 1 6 6 N 1.46505 * 109.46965 * 299.99979 * 5 3 2 7 7 C 1.34777 * 119.99974 * 180.02562 * 6 5 3 8 8 O 1.21609 * 120.00058 * 359.97438 * 7 6 5 9 9 C 1.47430 * 120.00013 * 179.97438 * 7 6 5 10 10 C 1.39229 * 120.28014 * 5.19043 * 9 7 6 11 11 C 1.38226 * 120.09160 * 179.97438 * 10 9 7 12 12 C 1.38831 * 120.67338 * 0.02562 * 11 10 9 13 13 C 1.37594 * 120.56915 * 359.97438 * 12 11 10 14 14 C 1.40696 * 119.88625 * 0.02562 * 13 12 11 15 15 C 1.40897 * 120.33076 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00255 * 142.49764 * 15 14 13 17 17 C 1.40273 * 119.99645 * 322.49362 * 15 14 13 18 18 N 1.30629 * 119.99789 * 169.17405 * 17 15 14 19 19 Si 1.86802 * 120.00100 * 349.17859 * 17 15 14 20 20 H 1.48497 * 109.47430 * 88.04427 * 19 17 15 21 21 H 1.48502 * 109.47093 * 208.04617 * 19 17 15 22 22 H 1.48500 * 109.47048 * 328.04552 * 19 17 15 23 23 C 1.53001 * 109.47131 * 263.51312 * 3 2 1 24 24 C 1.53006 * 117.49721 * 9.59026 * 23 3 2 25 25 C 1.52999 * 117.49838 * 300.93214 * 23 3 2 26 26 H 1.08992 * 109.47125 * 184.40879 * 1 2 3 27 27 H 1.09000 * 109.46704 * 304.41302 * 1 2 3 28 28 H 1.09002 * 109.46434 * 64.40740 * 1 2 3 29 29 H 1.08997 * 109.47544 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47116 * 59.99464 * 5 3 2 31 31 H 0.97005 * 119.99782 * 359.97438 * 6 5 3 32 32 H 1.07994 * 119.95531 * 0.24530 * 10 9 7 33 33 H 1.07997 * 119.66302 * 179.97438 * 11 10 9 34 34 H 1.07996 * 119.71044 * 179.97438 * 12 11 10 35 35 H 1.08007 * 120.05533 * 180.02562 * 13 12 11 36 36 H 0.96999 * 119.99761 * 180.02562 * 18 17 15 37 37 H 1.09002 * 115.54932 * 155.25886 * 23 3 2 38 38 H 1.08997 * 117.49454 * 0.02562 * 24 23 3 39 39 H 1.08997 * 117.49385 * 145.02200 * 24 23 3 40 40 H 1.09005 * 117.50019 * 214.97875 * 25 23 3 41 41 H 1.09004 * 117.49951 * 359.97325 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2972 2.0207 0.4100 5 6 3.2773 1.2997 0.8577 6 7 2.9361 0.9170 2.2301 7 6 3.9004 0.8445 3.1690 8 8 5.0537 1.0964 2.8768 9 6 3.5570 0.4600 4.5502 10 6 2.2598 0.0662 4.8674 11 6 1.9423 -0.2940 6.1636 12 6 2.9064 -0.2682 7.1622 13 6 4.1968 0.1164 6.8793 14 6 4.5461 0.4879 5.5680 15 6 5.8646 0.8838 5.2679 16 1 6.3128 0.6001 4.3272 17 6 6.5950 1.6466 6.1911 18 7 7.8755 1.8351 6.0145 19 14 5.7368 2.3926 7.6731 20 1 5.7402 1.4152 8.7911 21 1 6.4520 3.6251 8.0908 22 1 4.3356 2.7305 7.3154 23 6 2.3666 1.7051 -1.4333 24 6 1.8587 0.8079 -2.5638 25 6 3.3443 0.8077 -2.1946 26 1 -0.3633 -1.0245 0.0790 27 1 -0.3633 0.5808 0.8478 28 1 -0.3632 0.4439 -0.9269 29 1 3.7204 2.2955 0.8581 30 1 3.9903 0.5844 0.4477 31 1 2.0161 0.7164 2.4632 32 1 1.5016 0.0381 4.0989 33 1 0.9337 -0.5979 6.4020 34 1 2.6411 -0.5524 8.1697 35 1 4.9403 0.1330 7.6625 36 1 8.3807 2.3622 6.6531 37 1 2.4142 2.7772 -1.6243 38 1 1.2705 -0.0668 -2.2864 39 1 1.5727 1.2897 -3.4987 40 1 4.0350 1.2892 -2.8868 41 1 3.7340 -0.0673 -1.6742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601607896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:35 Heat of formation + Delta-G solvation = -34.031952 kcal Electronic energy + Delta-G solvation = -22860.388555 eV Core-core repulsion = 19513.068337 eV Total energy + Delta-G solvation = -3347.320218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.57397 -38.68088 -36.90191 -35.91865 -34.11654 -33.43998 -30.61569 -30.41939 -28.97114 -26.43816 -25.38743 -23.89674 -22.46549 -22.01858 -20.85297 -20.38965 -19.33548 -17.58185 -17.10757 -16.63895 -16.31820 -15.37271 -15.27771 -14.65908 -14.56624 -14.20105 -14.06879 -13.86395 -13.55781 -13.31065 -12.67927 -12.52036 -12.34475 -12.08457 -11.90436 -11.75915 -11.50988 -11.43965 -11.17146 -10.89985 -10.68092 -10.51690 -10.44004 -10.16589 -10.07699 -9.80489 -9.73715 -9.20097 -8.44337 -8.33960 -7.80647 -7.55483 -6.86673 -4.44909 2.13319 2.61824 3.10742 3.18524 3.29987 3.56096 3.63703 3.94888 3.98929 4.06621 4.62307 4.63800 4.78637 4.82121 5.08058 5.15044 5.27301 5.33095 5.34331 5.41355 5.53263 5.58341 5.78526 5.81064 5.88411 5.93172 6.01976 6.04503 6.11320 6.20053 6.43815 6.54657 6.82083 7.06522 7.12029 7.16033 7.26265 7.41874 7.61158 7.79000 8.04135 8.37393 8.52084 8.67259 8.90202 9.41082 10.10580 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.004352 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.899595 B = 6432.432913 C = 7435.529304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.108 3.892 4 H 0.071 0.929 5 C 0.131 3.869 6 N -0.744 5.744 7 C 0.561 3.439 8 O -0.529 6.529 9 C -0.247 4.247 10 C -0.041 4.041 11 C -0.254 4.254 12 C -0.066 4.066 13 C -0.229 4.229 14 C 0.118 3.882 15 C -0.403 4.403 16 H 0.123 0.877 17 C 0.079 3.921 18 N -0.795 5.795 19 Si 0.908 3.092 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.247 1.247 23 C -0.180 4.180 24 C -0.171 4.171 25 C -0.167 4.167 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.391 0.609 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.286 0.714 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.308 0.105 -10.171 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.293 6.293 3 C 0.049 3.951 4 H 0.089 0.911 5 C 0.007 3.993 6 N -0.399 5.399 7 C 0.354 3.646 8 O -0.406 6.406 9 C -0.252 4.252 10 C -0.060 4.060 11 C -0.273 4.273 12 C -0.084 4.084 13 C -0.247 4.247 14 C 0.113 3.887 15 C -0.430 4.430 16 H 0.141 0.859 17 C -0.141 4.141 18 N -0.418 5.418 19 Si 0.734 3.266 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.170 1.170 23 C -0.199 4.199 24 C -0.208 4.208 25 C -0.204 4.204 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.038 0.232 -10.366 15.888 hybrid contribution -0.985 0.536 0.762 1.356 sum -13.024 0.768 -9.604 16.200 Atomic orbital electron populations 1.22861 0.81335 1.02733 1.00003 1.87983 1.19362 1.27256 1.94687 1.21888 0.95186 0.84969 0.93011 0.91110 1.21240 0.95055 1.01249 0.81777 1.45857 1.11305 1.73863 1.08842 1.18329 0.84458 0.76865 0.84960 1.90731 1.19184 1.49357 1.81327 1.19462 0.94004 1.18102 0.93600 1.20780 0.94372 0.95429 0.95444 1.20291 0.98398 1.14988 0.93661 1.20748 0.93397 0.96991 0.97299 1.21249 0.96396 1.09567 0.97537 1.17559 0.92332 0.88878 0.89914 1.20150 0.94333 1.24261 1.04301 0.85936 1.26354 0.94253 0.95335 0.98122 1.69574 1.07580 1.29818 1.34862 0.86397 0.81429 0.78049 0.80692 1.19233 1.21619 1.16993 1.22763 1.06760 0.97710 0.92702 1.22925 0.97861 1.02221 0.97830 1.22905 0.92346 1.02223 1.02879 0.89681 0.93910 0.94017 0.90764 0.91203 0.77477 0.88766 0.88573 0.88587 0.87519 0.90315 0.87131 0.88057 0.89289 0.88930 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.22 101.05 1.03 1.27 16 2 O -0.37 -4.54 8.76 -35.23 -0.31 -4.85 16 3 C 0.11 1.27 2.65 -26.73 -0.07 1.20 16 4 H 0.07 0.75 7.65 -51.93 -0.40 0.35 16 5 C 0.13 2.04 5.22 -4.04 -0.02 2.02 16 6 N -0.74 -13.34 5.40 -61.38 -0.33 -13.67 16 7 C 0.56 13.07 7.72 -12.52 -0.10 12.98 16 8 O -0.53 -14.34 13.56 5.27 0.07 -14.27 16 9 C -0.25 -5.90 5.92 -104.37 -0.62 -6.52 16 10 C -0.04 -0.84 9.52 -39.22 -0.37 -1.21 16 11 C -0.25 -5.04 10.03 -39.37 -0.39 -5.44 16 12 C -0.07 -1.38 10.01 -39.60 -0.40 -1.78 16 13 C -0.23 -5.47 7.17 -38.89 -0.28 -5.75 16 14 C 0.12 3.08 5.00 -106.54 -0.53 2.55 16 15 C -0.40 -11.50 8.26 -37.81 -0.31 -11.81 16 16 H 0.12 3.87 6.03 -52.49 -0.32 3.56 16 17 C 0.08 2.15 5.47 -17.30 -0.09 2.05 16 18 N -0.79 -21.86 13.92 55.56 0.77 -21.08 16 19 Si 0.91 21.00 24.59 -169.99 -4.18 16.82 16 20 H -0.27 -5.85 6.55 56.52 0.37 -5.48 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.25 -5.85 7.01 56.52 0.40 -5.45 16 23 C -0.18 -1.86 5.83 -90.62 -0.53 -2.39 16 24 C -0.17 -1.61 9.53 -26.69 -0.25 -1.86 16 25 C -0.17 -1.76 9.68 -26.69 -0.26 -2.02 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.35 8.00 -51.93 -0.42 -0.07 16 28 H 0.04 0.32 7.43 -51.93 -0.39 -0.07 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.19 7.35 -51.93 -0.38 0.81 16 31 H 0.39 6.09 6.41 -40.82 -0.26 5.83 16 32 H 0.09 1.57 6.43 -52.49 -0.34 1.23 16 33 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.11 2.52 5.06 -52.48 -0.27 2.25 16 36 H 0.29 7.07 8.29 -40.82 -0.34 6.73 16 37 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 0.99 6.22 -51.93 -0.32 0.67 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.10 1.21 7.67 -51.93 -0.40 0.81 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -31.02 332.49 -7.78 -38.79 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.61 Total: 9.96 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -3.20 Total: -16.71 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.44 Total: -34.75 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.24 Total: -19.12 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.18 Total: 16.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.02 -7.78 -38.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601607896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.763 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds