Wall clock time and date at job start Tue Mar 31 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99842 * 2 1 4 4 H 1.09000 * 109.47563 * 23.51415 * 3 2 1 5 5 C 1.53001 * 109.47120 * 143.51677 * 3 2 1 6 6 N 1.46505 * 109.46965 * 299.99979 * 5 3 2 7 7 C 1.34777 * 119.99974 * 180.02562 * 6 5 3 8 8 O 1.21609 * 120.00058 * 359.97438 * 7 6 5 9 9 C 1.47430 * 120.00013 * 179.97438 * 7 6 5 10 10 C 1.39229 * 120.28014 * 5.19043 * 9 7 6 11 11 C 1.38226 * 120.09160 * 179.97438 * 10 9 7 12 12 C 1.38831 * 120.67338 * 0.02562 * 11 10 9 13 13 C 1.37594 * 120.56915 * 359.97438 * 12 11 10 14 14 C 1.40696 * 119.88625 * 0.02562 * 13 12 11 15 15 C 1.40897 * 120.33076 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00255 * 142.49764 * 15 14 13 17 17 C 1.40273 * 119.99645 * 322.49362 * 15 14 13 18 18 N 1.30629 * 119.99789 * 169.17405 * 17 15 14 19 19 Si 1.86802 * 120.00100 * 349.17859 * 17 15 14 20 20 H 1.48497 * 109.47430 * 88.04427 * 19 17 15 21 21 H 1.48502 * 109.47093 * 208.04617 * 19 17 15 22 22 H 1.48500 * 109.47048 * 328.04552 * 19 17 15 23 23 C 1.53001 * 109.47131 * 263.51312 * 3 2 1 24 24 C 1.53006 * 117.49721 * 9.59026 * 23 3 2 25 25 C 1.52999 * 117.49838 * 300.93214 * 23 3 2 26 26 H 1.08992 * 109.47125 * 184.40879 * 1 2 3 27 27 H 1.09000 * 109.46704 * 304.41302 * 1 2 3 28 28 H 1.09002 * 109.46434 * 64.40740 * 1 2 3 29 29 H 1.08997 * 109.47544 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47116 * 59.99464 * 5 3 2 31 31 H 0.97005 * 119.99782 * 359.97438 * 6 5 3 32 32 H 1.07994 * 119.95531 * 0.24530 * 10 9 7 33 33 H 1.07997 * 119.66302 * 179.97438 * 11 10 9 34 34 H 1.07996 * 119.71044 * 179.97438 * 12 11 10 35 35 H 1.08007 * 120.05533 * 180.02562 * 13 12 11 36 36 H 0.96999 * 119.99761 * 180.02562 * 18 17 15 37 37 H 1.09002 * 115.54932 * 155.25886 * 23 3 2 38 38 H 1.08997 * 117.49454 * 0.02562 * 24 23 3 39 39 H 1.08997 * 117.49385 * 145.02200 * 24 23 3 40 40 H 1.09005 * 117.50019 * 214.97875 * 25 23 3 41 41 H 1.09004 * 117.49951 * 359.97325 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2972 2.0207 0.4100 5 6 3.2773 1.2997 0.8577 6 7 2.9361 0.9170 2.2301 7 6 3.9004 0.8445 3.1690 8 8 5.0537 1.0964 2.8768 9 6 3.5570 0.4600 4.5502 10 6 2.2598 0.0662 4.8674 11 6 1.9423 -0.2940 6.1636 12 6 2.9064 -0.2682 7.1622 13 6 4.1968 0.1164 6.8793 14 6 4.5461 0.4879 5.5680 15 6 5.8646 0.8838 5.2679 16 1 6.3128 0.6001 4.3272 17 6 6.5950 1.6466 6.1911 18 7 7.8755 1.8351 6.0145 19 14 5.7368 2.3926 7.6731 20 1 5.7402 1.4152 8.7911 21 1 6.4520 3.6251 8.0908 22 1 4.3356 2.7305 7.3154 23 6 2.3666 1.7051 -1.4333 24 6 1.8587 0.8079 -2.5638 25 6 3.3443 0.8077 -2.1946 26 1 -0.3633 -1.0245 0.0790 27 1 -0.3633 0.5808 0.8478 28 1 -0.3632 0.4439 -0.9269 29 1 3.7204 2.2955 0.8581 30 1 3.9903 0.5844 0.4477 31 1 2.0161 0.7164 2.4632 32 1 1.5016 0.0381 4.0989 33 1 0.9337 -0.5979 6.4020 34 1 2.6411 -0.5524 8.1697 35 1 4.9403 0.1330 7.6625 36 1 8.3807 2.3622 6.6531 37 1 2.4142 2.7772 -1.6243 38 1 1.2705 -0.0668 -2.2864 39 1 1.5727 1.2897 -3.4987 40 1 4.0350 1.2892 -2.8868 41 1 3.7340 -0.0673 -1.6742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601607896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:34 Heat of formation + Delta-G solvation = -55.183326 kcal Electronic energy + Delta-G solvation = -22861.305747 eV Core-core repulsion = 19513.068337 eV Total energy + Delta-G solvation = -3348.237411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96251 -40.02285 -38.65856 -36.74386 -35.83473 -35.23491 -32.30455 -32.18902 -30.27611 -27.41014 -27.02096 -25.19687 -23.85710 -23.16757 -22.55889 -21.56213 -20.79723 -19.46873 -18.45509 -17.86287 -17.34182 -17.11180 -16.64707 -16.03820 -15.80764 -15.79697 -15.46471 -15.27996 -15.18747 -14.51628 -14.34231 -14.06982 -13.92549 -13.63782 -13.21672 -12.96368 -12.71212 -12.62062 -12.52066 -12.27812 -12.19447 -12.07311 -12.03972 -11.62947 -11.29894 -11.05003 -10.96084 -10.62941 -10.29960 -9.99968 -9.52948 -9.39878 -8.81164 -6.47944 0.34324 0.83395 1.23990 1.37324 1.46342 2.10489 2.26702 2.36195 2.71389 2.77250 2.87386 3.53354 3.76348 3.87377 3.94337 4.19800 4.22880 4.26732 4.35911 4.43178 4.46457 4.56854 4.64329 4.65164 4.72998 4.81085 4.83442 4.90168 4.95951 5.00984 5.04066 5.22327 5.30850 5.32341 5.46738 5.60510 5.69184 5.87237 5.97029 6.25404 6.27805 6.48322 6.67831 6.79403 6.91847 7.63896 8.23825 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.004352 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.899595 B = 6432.432913 C = 7435.529304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.396 6.396 3 C 0.119 3.881 4 H 0.092 0.908 5 C 0.129 3.871 6 N -0.721 5.721 7 C 0.552 3.448 8 O -0.579 6.579 9 C -0.266 4.266 10 C -0.040 4.040 11 C -0.228 4.228 12 C -0.061 4.061 13 C -0.249 4.249 14 C 0.101 3.899 15 C -0.453 4.453 16 H 0.069 0.931 17 C 0.036 3.964 18 N -0.851 5.851 19 Si 0.969 3.031 20 H -0.245 1.245 21 H -0.278 1.278 22 H -0.254 1.254 23 C -0.184 4.184 24 C -0.152 4.152 25 C -0.184 4.184 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.406 0.594 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.104 0.896 36 H 0.293 0.707 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.474 -0.112 -9.451 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.316 6.316 3 C 0.061 3.939 4 H 0.110 0.890 5 C 0.005 3.995 6 N -0.375 5.375 7 C 0.345 3.655 8 O -0.461 6.461 9 C -0.271 4.271 10 C -0.058 4.058 11 C -0.247 4.247 12 C -0.079 4.079 13 C -0.268 4.268 14 C 0.097 3.903 15 C -0.482 4.482 16 H 0.087 0.913 17 C -0.177 4.177 18 N -0.478 5.478 19 Si 0.791 3.209 20 H -0.169 1.169 21 H -0.205 1.205 22 H -0.178 1.178 23 C -0.203 4.203 24 C -0.189 4.189 25 C -0.221 4.221 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.243 0.757 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.144 0.856 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.266 -0.008 -9.665 19.787 hybrid contribution 0.297 0.424 0.408 0.659 sum -16.969 0.416 -9.257 19.334 Atomic orbital electron populations 1.23075 0.79361 1.03821 1.01289 1.87959 1.21511 1.27242 1.94842 1.21723 0.93472 0.85625 0.93104 0.89026 1.21363 0.97218 1.00006 0.80946 1.45612 1.10979 1.71980 1.08923 1.18566 0.84503 0.76518 0.85935 1.90732 1.21556 1.51546 1.82230 1.19857 0.95543 1.18221 0.93460 1.21216 0.93383 0.93894 0.97326 1.20961 1.00233 1.10905 0.92589 1.21272 0.92029 0.94791 0.99832 1.21350 0.98227 1.10779 0.96439 1.17813 0.91826 0.88693 0.91948 1.19897 0.96596 1.28443 1.03275 0.91348 1.27102 0.94723 0.95199 1.00711 1.69632 1.08939 1.32362 1.36837 0.85483 0.79566 0.77984 0.77844 1.16903 1.20457 1.17809 1.22818 1.06791 0.98595 0.92064 1.22970 0.96219 1.01643 0.98030 1.22895 0.93655 1.01919 1.03646 0.88742 0.92773 0.92603 0.91531 0.93487 0.75661 0.84487 0.83630 0.84421 0.87772 0.89665 0.85600 0.88289 0.87197 0.88035 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.22 113.37 1.16 1.45 16 2 O -0.40 -8.76 8.76 -148.98 -1.31 -10.06 16 3 C 0.12 2.59 2.65 30.59 0.08 2.67 16 4 H 0.09 1.63 7.65 -2.39 -0.02 1.61 16 5 C 0.13 4.06 5.22 86.38 0.45 4.51 16 6 N -0.72 -25.53 5.40 -466.35 -2.52 -28.05 16 7 C 0.55 26.58 7.72 86.66 0.67 27.25 16 8 O -0.58 -34.03 13.56 -4.06 -0.06 -34.08 16 9 C -0.27 -12.66 5.92 -19.70 -0.12 -12.78 16 10 C -0.04 -1.44 9.52 22.51 0.21 -1.23 16 11 C -0.23 -7.64 10.03 22.41 0.22 -7.42 16 12 C -0.06 -2.27 10.01 22.26 0.22 -2.05 16 13 C -0.25 -11.58 7.17 22.72 0.16 -11.41 16 14 C 0.10 5.41 5.00 -21.11 -0.11 5.31 16 15 C -0.45 -27.87 8.26 23.42 0.19 -27.67 16 16 H 0.07 4.83 6.03 -2.91 -0.02 4.81 16 17 C 0.04 2.08 5.47 85.37 0.47 2.55 16 18 N -0.85 -50.50 13.92 21.88 0.30 -50.19 16 19 Si 0.97 44.33 24.59 68.60 1.69 46.01 16 20 H -0.24 -10.15 6.55 99.48 0.65 -9.50 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.25 -11.73 7.01 99.48 0.70 -11.03 16 23 C -0.18 -3.48 5.83 -10.79 -0.06 -3.54 16 24 C -0.15 -2.50 9.53 30.62 0.29 -2.21 16 25 C -0.18 -3.83 9.68 30.62 0.30 -3.54 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 0.65 8.00 -2.39 -0.02 0.63 16 28 H 0.06 0.64 7.43 -2.39 -0.02 0.62 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.70 7.35 -2.39 -0.02 1.69 16 31 H 0.41 11.58 6.41 -92.70 -0.59 10.98 16 32 H 0.14 3.78 6.43 -2.91 -0.02 3.76 16 33 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 34 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 35 H 0.10 4.82 5.06 -2.91 -0.01 4.81 16 36 H 0.29 15.49 8.29 -92.71 -0.77 14.72 16 37 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.10 1.70 6.22 -2.39 -0.01 1.69 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.08 1.95 7.67 -2.38 -0.02 1.93 16 Total: -1.00 -75.55 332.49 2.65 -72.90 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.39 Total: 31.58 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 4.15 Total: -28.11 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -2.21 Total: -78.24 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -1.36 Total: -44.15 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.69 Total: 46.01 kcal Total: -75.55 2.65 -72.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601607896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.716 kcal (2) G-P(sol) polarization free energy of solvation -75.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds