Wall clock time and date at job start Tue Mar 31 2020 05:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42902 * 114.00178 * 2 1 4 4 H 1.09005 * 109.46874 * 12.51575 * 3 2 1 5 5 C 1.52997 * 109.47531 * 252.51426 * 3 2 1 6 6 N 1.46503 * 109.47279 * 66.04587 * 5 3 2 7 7 C 1.34775 * 120.00271 * 182.48213 * 6 5 3 8 8 O 1.21612 * 119.99563 * 0.02562 * 7 6 5 9 9 C 1.47431 * 120.00157 * 180.02562 * 7 6 5 10 10 C 1.39231 * 120.28138 * 354.49593 * 9 7 6 11 11 C 1.38225 * 120.08876 * 180.27572 * 10 9 7 12 12 C 1.38818 * 120.67642 * 359.69806 * 11 10 9 13 13 C 1.37602 * 120.57282 * 359.97438 * 12 11 10 14 14 C 1.40704 * 119.87783 * 0.02562 * 13 12 11 15 15 C 1.40894 * 120.32494 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99673 * 150.54117 * 15 14 13 17 17 C 1.40273 * 120.00000 * 330.54188 * 15 14 13 18 18 N 1.30631 * 119.99981 * 337.48786 * 17 15 14 19 19 Si 1.86805 * 119.99953 * 157.48730 * 17 15 14 20 20 H 1.48500 * 109.46891 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47103 * 300.00055 * 19 17 15 22 22 H 1.48494 * 109.46743 * 60.00095 * 19 17 15 23 23 C 1.52996 * 109.47310 * 132.51108 * 3 2 1 24 24 C 1.53002 * 117.50082 * 8.75110 * 23 3 2 25 25 C 1.53005 * 117.50163 * 300.08906 * 23 3 2 26 26 H 1.08996 * 109.47537 * 68.23922 * 1 2 3 27 27 H 1.08999 * 109.47455 * 188.24334 * 1 2 3 28 28 H 1.09002 * 109.47146 * 308.23864 * 1 2 3 29 29 H 1.09000 * 109.47106 * 306.05028 * 5 3 2 30 30 H 1.08996 * 109.47777 * 186.05334 * 5 3 2 31 31 H 0.96998 * 119.99764 * 2.48609 * 6 5 3 32 32 H 1.08000 * 119.95285 * 359.97438 * 10 9 7 33 33 H 1.08003 * 119.65882 * 179.71723 * 11 10 9 34 34 H 1.08004 * 119.71524 * 180.02562 * 12 11 10 35 35 H 1.08002 * 120.05907 * 180.02562 * 13 12 11 36 36 H 0.96993 * 120.00145 * 353.40646 * 18 17 15 37 37 H 1.09004 * 115.55225 * 154.41900 * 23 3 2 38 38 H 1.08999 * 117.49462 * 359.97438 * 24 23 3 39 39 H 1.08997 * 117.50354 * 145.02237 * 24 23 3 40 40 H 1.08999 * 117.50094 * 214.97816 * 25 23 3 41 41 H 1.09007 * 117.49376 * 0.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2414 2.0455 0.2227 5 6 2.6136 1.5951 -1.3758 6 7 1.5426 1.6715 -2.3725 7 6 1.8436 1.8697 -3.6712 8 8 3.0042 1.9847 -4.0157 9 6 0.7658 1.9471 -4.6742 10 6 -0.5546 1.7030 -4.3061 11 6 -1.5613 1.7710 -5.2509 12 6 -1.2731 2.0880 -6.5713 13 6 0.0213 2.3410 -6.9639 14 6 1.0644 2.2783 -6.0217 15 6 2.3932 2.5350 -6.4135 16 1 3.0942 2.9509 -5.7050 17 6 2.8056 2.2505 -7.7237 18 7 2.1502 1.3760 -8.4393 19 14 4.2919 3.1222 -8.4452 20 1 4.5182 2.6475 -9.8339 21 1 4.0499 4.5872 -8.4554 22 1 5.4896 2.8241 -7.6194 23 6 3.1081 1.3749 1.0633 24 6 3.5157 0.0669 1.7444 25 6 2.7034 1.1107 2.5150 26 1 -0.3634 0.3810 -0.9544 27 1 -0.3634 -1.0170 0.1473 28 1 -0.3633 0.6361 0.8072 29 1 3.3043 0.7961 -1.6452 30 1 3.1497 2.5436 -1.3451 31 1 0.6169 1.5795 -2.0978 32 1 -0.7920 1.4553 -3.2821 33 1 -2.5826 1.5759 -4.9587 34 1 -2.0718 2.1373 -7.2967 35 1 0.2360 2.5873 -7.9933 36 1 1.4392 0.8541 -8.0357 37 1 3.8890 2.1142 0.8851 38 1 3.0014 -0.8430 1.4352 39 1 4.5647 -0.0542 2.0147 40 1 3.2183 1.6759 3.2919 41 1 1.6549 0.8870 2.7124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601607899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:37 Heat of formation + Delta-G solvation = -43.461168 kcal Electronic energy + Delta-G solvation = -22832.107277 eV Core-core repulsion = 19484.378177 eV Total energy + Delta-G solvation = -3347.729100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.54606 -38.61275 -36.90444 -36.09938 -34.24596 -33.63063 -30.54147 -29.55882 -28.90411 -26.50955 -25.27447 -23.68264 -22.47960 -21.93446 -20.86417 -20.69302 -19.35114 -18.14647 -16.86742 -16.60358 -16.11451 -15.55990 -14.83973 -14.63368 -14.57578 -14.23177 -14.03912 -13.84921 -13.53412 -13.42040 -12.66129 -12.51027 -12.23819 -12.11014 -11.74224 -11.64456 -11.46961 -11.35910 -11.14801 -10.91333 -10.73798 -10.54185 -10.37579 -10.19371 -10.14190 -9.72674 -9.58526 -9.07852 -8.48272 -8.38306 -7.77859 -7.65212 -7.16981 -4.47220 2.26283 2.74708 3.19613 3.31264 3.40208 3.44034 3.76873 3.90490 4.02599 4.08869 4.59969 4.62460 4.72261 4.79453 5.04448 5.07229 5.21858 5.32360 5.39169 5.48204 5.50762 5.59067 5.73872 5.86267 5.86780 5.94208 5.98651 6.11665 6.15748 6.23246 6.51734 6.73427 7.00838 7.07149 7.10547 7.28366 7.51130 7.58342 7.73457 7.89187 8.08288 8.21084 8.35722 8.74027 8.85306 9.37216 9.98524 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018617 B = 0.004329 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.616736 B = 6466.543131 C = 7701.223949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.375 6.375 3 C 0.109 3.891 4 H 0.070 0.930 5 C 0.115 3.885 6 N -0.748 5.748 7 C 0.564 3.436 8 O -0.538 6.538 9 C -0.271 4.271 10 C -0.041 4.041 11 C -0.265 4.265 12 C -0.074 4.074 13 C -0.206 4.206 14 C 0.119 3.881 15 C -0.464 4.464 16 H 0.110 0.890 17 C 0.032 3.968 18 N -0.786 5.786 19 Si 1.069 2.931 20 H -0.274 1.274 21 H -0.273 1.273 22 H -0.272 1.272 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.177 4.177 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.387 0.613 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.300 0.700 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 -0.293 15.300 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.050 3.950 4 H 0.088 0.912 5 C -0.010 4.010 6 N -0.403 5.403 7 C 0.358 3.642 8 O -0.417 6.417 9 C -0.275 4.275 10 C -0.060 4.060 11 C -0.284 4.284 12 C -0.093 4.093 13 C -0.225 4.225 14 C 0.115 3.885 15 C -0.491 4.491 16 H 0.127 0.873 17 C -0.190 4.190 18 N -0.408 5.408 19 Si 0.892 3.108 20 H -0.199 1.199 21 H -0.199 1.199 22 H -0.197 1.197 23 C -0.181 4.181 24 C -0.198 4.198 25 C -0.214 4.214 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.222 0.778 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.027 -0.257 13.622 13.625 hybrid contribution -1.838 -0.102 1.608 2.444 sum -1.865 -0.359 15.230 15.348 Atomic orbital electron populations 1.22895 0.81193 1.02794 0.99950 1.87941 1.19377 1.27206 1.94870 1.21831 0.94583 0.85051 0.93496 0.91190 1.21533 0.91188 1.01860 0.86408 1.46007 1.08840 1.77937 1.07515 1.18379 0.89289 0.75492 0.80994 1.90659 1.21180 1.50449 1.79432 1.19313 0.91649 1.21089 0.95496 1.20662 0.92696 0.96146 0.96450 1.20197 0.97093 1.17108 0.94043 1.20718 0.95759 0.97668 0.95120 1.21252 0.92278 1.09341 0.99628 1.17461 0.93532 0.87713 0.89822 1.21325 0.96875 1.32293 0.98560 0.87280 1.27330 1.02622 0.95405 0.93672 1.70374 1.16943 1.13412 1.40090 0.83590 0.74272 0.76447 0.76538 1.19868 1.19881 1.19700 1.22451 1.01061 1.01838 0.92781 1.22880 1.00180 0.94095 1.02691 1.22921 1.00912 1.03815 0.93737 0.93942 0.89564 0.94001 0.91004 0.91316 0.77824 0.89534 0.89012 0.88949 0.87415 0.88646 0.86552 0.87571 0.89081 0.88890 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.67 101.05 1.08 1.37 16 2 O -0.38 -4.80 8.66 -35.23 -0.31 -5.10 16 3 C 0.11 1.32 2.63 -26.73 -0.07 1.25 16 4 H 0.07 0.77 7.54 -51.93 -0.39 0.38 16 5 C 0.11 1.81 5.32 -4.04 -0.02 1.79 16 6 N -0.75 -13.70 5.46 -61.38 -0.34 -14.04 16 7 C 0.56 13.39 7.72 -12.52 -0.10 13.29 16 8 O -0.54 -14.52 13.51 5.27 0.07 -14.45 16 9 C -0.27 -6.69 5.92 -104.37 -0.62 -7.31 16 10 C -0.04 -0.87 9.52 -39.22 -0.37 -1.24 16 11 C -0.26 -5.61 10.03 -39.37 -0.39 -6.00 16 12 C -0.07 -1.65 10.01 -39.60 -0.40 -2.05 16 13 C -0.21 -5.18 7.92 -38.88 -0.31 -5.49 16 14 C 0.12 3.21 5.25 -106.54 -0.56 2.65 16 15 C -0.46 -12.87 7.79 -37.81 -0.29 -13.16 16 16 H 0.11 3.16 5.74 -52.49 -0.30 2.86 16 17 C 0.03 0.85 4.98 -17.30 -0.09 0.76 16 18 N -0.79 -21.02 12.39 55.56 0.69 -20.33 16 19 Si 1.07 22.46 29.99 -169.99 -5.10 17.36 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 C -0.16 -1.72 5.70 -90.62 -0.52 -2.23 16 24 C -0.16 -1.63 9.88 -26.69 -0.26 -1.89 16 25 C -0.18 -1.59 10.19 -26.69 -0.27 -1.86 16 26 H 0.04 0.45 6.46 -51.93 -0.34 0.12 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.35 7.96 -51.93 -0.41 -0.06 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.39 6.19 4.66 -40.82 -0.19 6.00 16 32 H 0.09 1.53 6.43 -52.49 -0.34 1.20 16 33 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 34 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 35 H 0.11 2.76 6.69 -52.49 -0.35 2.41 16 36 H 0.30 8.23 6.67 -40.82 -0.27 7.95 16 37 H 0.12 1.15 8.11 -51.93 -0.42 0.73 16 38 H 0.11 1.19 7.06 -51.93 -0.37 0.82 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -30.50 337.17 -8.65 -39.15 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.56 Total: 12.45 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -3.19 Total: -20.13 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.35 Total: -34.37 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.23 Total: -19.56 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.10 Total: 17.36 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.50 -8.65 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601607899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.306 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds