Wall clock time and date at job start Tue Mar 31 2020 05:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42902 * 114.00178 * 2 1 4 4 H 1.09005 * 109.46874 * 12.51575 * 3 2 1 5 5 C 1.52997 * 109.47531 * 252.51426 * 3 2 1 6 6 N 1.46503 * 109.47279 * 66.04587 * 5 3 2 7 7 C 1.34775 * 120.00271 * 182.48213 * 6 5 3 8 8 O 1.21612 * 119.99563 * 0.02562 * 7 6 5 9 9 C 1.47431 * 120.00157 * 180.02562 * 7 6 5 10 10 C 1.39231 * 120.28138 * 354.49593 * 9 7 6 11 11 C 1.38225 * 120.08876 * 180.27572 * 10 9 7 12 12 C 1.38818 * 120.67642 * 359.69806 * 11 10 9 13 13 C 1.37602 * 120.57282 * 359.97438 * 12 11 10 14 14 C 1.40704 * 119.87783 * 0.02562 * 13 12 11 15 15 C 1.40894 * 120.32494 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99673 * 150.54117 * 15 14 13 17 17 C 1.40273 * 120.00000 * 330.54188 * 15 14 13 18 18 N 1.30631 * 119.99981 * 337.48786 * 17 15 14 19 19 Si 1.86805 * 119.99953 * 157.48730 * 17 15 14 20 20 H 1.48500 * 109.46891 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47103 * 300.00055 * 19 17 15 22 22 H 1.48494 * 109.46743 * 60.00095 * 19 17 15 23 23 C 1.52996 * 109.47310 * 132.51108 * 3 2 1 24 24 C 1.53002 * 117.50082 * 8.75110 * 23 3 2 25 25 C 1.53005 * 117.50163 * 300.08906 * 23 3 2 26 26 H 1.08996 * 109.47537 * 68.23922 * 1 2 3 27 27 H 1.08999 * 109.47455 * 188.24334 * 1 2 3 28 28 H 1.09002 * 109.47146 * 308.23864 * 1 2 3 29 29 H 1.09000 * 109.47106 * 306.05028 * 5 3 2 30 30 H 1.08996 * 109.47777 * 186.05334 * 5 3 2 31 31 H 0.96998 * 119.99764 * 2.48609 * 6 5 3 32 32 H 1.08000 * 119.95285 * 359.97438 * 10 9 7 33 33 H 1.08003 * 119.65882 * 179.71723 * 11 10 9 34 34 H 1.08004 * 119.71524 * 180.02562 * 12 11 10 35 35 H 1.08002 * 120.05907 * 180.02562 * 13 12 11 36 36 H 0.96993 * 120.00145 * 353.40646 * 18 17 15 37 37 H 1.09004 * 115.55225 * 154.41900 * 23 3 2 38 38 H 1.08999 * 117.49462 * 359.97438 * 24 23 3 39 39 H 1.08997 * 117.50354 * 145.02237 * 24 23 3 40 40 H 1.08999 * 117.50094 * 214.97816 * 25 23 3 41 41 H 1.09007 * 117.49376 * 0.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2414 2.0455 0.2227 5 6 2.6136 1.5951 -1.3758 6 7 1.5426 1.6715 -2.3725 7 6 1.8436 1.8697 -3.6712 8 8 3.0042 1.9847 -4.0157 9 6 0.7658 1.9471 -4.6742 10 6 -0.5546 1.7030 -4.3061 11 6 -1.5613 1.7710 -5.2509 12 6 -1.2731 2.0880 -6.5713 13 6 0.0213 2.3410 -6.9639 14 6 1.0644 2.2783 -6.0217 15 6 2.3932 2.5350 -6.4135 16 1 3.0942 2.9509 -5.7050 17 6 2.8056 2.2505 -7.7237 18 7 2.1502 1.3760 -8.4393 19 14 4.2919 3.1222 -8.4452 20 1 4.5182 2.6475 -9.8339 21 1 4.0499 4.5872 -8.4554 22 1 5.4896 2.8241 -7.6194 23 6 3.1081 1.3749 1.0633 24 6 3.5157 0.0669 1.7444 25 6 2.7034 1.1107 2.5150 26 1 -0.3634 0.3810 -0.9544 27 1 -0.3634 -1.0170 0.1473 28 1 -0.3633 0.6361 0.8072 29 1 3.3043 0.7961 -1.6452 30 1 3.1497 2.5436 -1.3451 31 1 0.6169 1.5795 -2.0978 32 1 -0.7920 1.4553 -3.2821 33 1 -2.5826 1.5759 -4.9587 34 1 -2.0718 2.1373 -7.2967 35 1 0.2360 2.5873 -7.9933 36 1 1.4392 0.8541 -8.0357 37 1 3.8890 2.1142 0.8851 38 1 3.0014 -0.8430 1.4352 39 1 4.5647 -0.0542 2.0147 40 1 3.2183 1.6759 3.2919 41 1 1.6549 0.8870 2.7124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601607899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:37 Heat of formation + Delta-G solvation = -61.900800 kcal Electronic energy + Delta-G solvation = -22832.906879 eV Core-core repulsion = 19484.378177 eV Total energy + Delta-G solvation = -3348.528702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.00162 -39.95886 -38.69666 -36.94204 -36.04913 -35.31521 -32.20304 -31.36175 -30.33069 -27.53428 -27.01872 -25.05557 -23.66940 -23.14442 -22.67258 -21.80952 -20.88680 -20.01329 -18.35090 -17.66118 -17.19686 -16.93178 -16.57786 -16.09450 -16.03988 -15.69241 -15.47264 -15.37715 -15.13779 -14.45886 -14.28201 -14.01213 -13.96449 -13.55937 -13.14346 -12.97005 -12.72689 -12.50587 -12.42676 -12.37016 -12.21571 -12.03600 -11.95727 -11.52525 -11.30414 -10.99068 -10.97360 -10.65216 -10.31042 -10.05005 -9.62854 -9.55261 -9.14019 -6.48284 0.39537 0.90247 1.45890 1.61859 1.76426 2.22792 2.29087 2.32042 2.62335 2.69591 3.02746 3.56518 3.65021 3.83854 3.93687 4.12877 4.20618 4.24173 4.28028 4.41795 4.42893 4.52363 4.54291 4.60161 4.74537 4.82148 4.84030 4.87376 4.92296 5.04350 5.14099 5.24796 5.37115 5.40605 5.52586 5.62703 5.70215 5.87987 5.95925 6.17309 6.18531 6.32651 6.64168 6.82733 6.89601 7.56727 7.97416 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018617 B = 0.004329 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.616736 B = 6466.543131 C = 7701.223949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.393 6.393 3 C 0.120 3.880 4 H 0.089 0.911 5 C 0.113 3.887 6 N -0.726 5.726 7 C 0.557 3.443 8 O -0.581 6.581 9 C -0.292 4.292 10 C -0.039 4.039 11 C -0.249 4.249 12 C -0.070 4.070 13 C -0.231 4.231 14 C 0.095 3.905 15 C -0.510 4.510 16 H 0.085 0.915 17 C 0.000 4.000 18 N -0.807 5.807 19 Si 1.115 2.885 20 H -0.263 1.263 21 H -0.258 1.258 22 H -0.271 1.271 23 C -0.177 4.177 24 C -0.170 4.170 25 C -0.155 4.155 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.401 0.599 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.284 0.716 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.981 -0.146 17.621 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.312 6.312 3 C 0.061 3.939 4 H 0.107 0.893 5 C -0.011 4.011 6 N -0.381 5.381 7 C 0.350 3.650 8 O -0.463 6.463 9 C -0.297 4.297 10 C -0.058 4.058 11 C -0.268 4.268 12 C -0.088 4.088 13 C -0.251 4.251 14 C 0.091 3.909 15 C -0.538 4.538 16 H 0.103 0.897 17 C -0.217 4.217 18 N -0.430 5.430 19 Si 0.932 3.068 20 H -0.187 1.187 21 H -0.183 1.183 22 H -0.196 1.196 23 C -0.196 4.196 24 C -0.207 4.207 25 C -0.192 4.192 26 H 0.055 0.945 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.239 0.761 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.142 0.858 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.194 -0.120 15.994 16.144 hybrid contribution -1.409 -0.221 1.094 1.798 sum -3.603 -0.341 17.088 17.468 Atomic orbital electron populations 1.23105 0.79812 1.04204 1.00527 1.87942 1.21024 1.27413 1.94810 1.21723 0.95411 0.85471 0.91257 0.89332 1.21712 0.90496 1.01047 0.87876 1.45770 1.10312 1.75845 1.06162 1.18480 0.88528 0.75358 0.82602 1.90638 1.22717 1.52387 1.80539 1.19720 0.93704 1.21012 0.95217 1.21081 0.91154 0.94682 0.98847 1.20768 0.99108 1.13856 0.93075 1.21145 0.95245 0.95707 0.96719 1.21219 0.93474 1.11489 0.98875 1.17862 0.93862 0.87709 0.91447 1.21271 0.97398 1.35777 0.99305 0.89697 1.28548 1.04409 0.95028 0.93722 1.70485 1.17853 1.14644 1.39999 0.83049 0.71221 0.76325 0.76253 1.18656 1.18270 1.19588 1.22457 1.01126 1.02439 0.93553 1.22898 1.00908 0.93573 1.03349 1.22996 1.01209 1.02325 0.92698 0.94481 0.88403 0.91685 0.93433 0.91371 0.76146 0.85284 0.84570 0.85757 0.89029 0.90384 0.86175 0.88883 0.88247 0.87144 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.67 113.37 1.21 1.55 16 2 O -0.39 -9.26 8.66 -148.98 -1.29 -10.55 16 3 C 0.12 2.69 2.63 30.59 0.08 2.77 16 4 H 0.09 1.67 7.54 -2.38 -0.02 1.65 16 5 C 0.11 3.54 5.32 86.38 0.46 4.00 16 6 N -0.73 -26.07 5.46 -466.37 -2.55 -28.62 16 7 C 0.56 26.92 7.72 86.67 0.67 27.59 16 8 O -0.58 -32.92 13.51 -4.07 -0.05 -32.98 16 9 C -0.29 -14.48 5.92 -19.70 -0.12 -14.59 16 10 C -0.04 -1.56 9.52 22.51 0.21 -1.35 16 11 C -0.25 -9.53 10.03 22.41 0.22 -9.31 16 12 C -0.07 -2.96 10.01 22.26 0.22 -2.74 16 13 C -0.23 -11.85 7.92 22.72 0.18 -11.67 16 14 C 0.10 5.30 5.25 -21.11 -0.11 5.19 16 15 C -0.51 -29.95 7.79 23.42 0.18 -29.77 16 16 H 0.09 5.28 5.74 -2.91 -0.02 5.26 16 17 C 0.00 -0.02 4.98 85.37 0.43 0.40 16 18 N -0.81 -45.26 12.39 21.88 0.27 -44.99 16 19 Si 1.11 47.19 29.99 68.60 2.06 49.25 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 C -0.18 -3.42 5.70 -10.79 -0.06 -3.48 16 24 C -0.17 -3.17 9.88 30.62 0.30 -2.86 16 25 C -0.16 -2.33 10.19 30.62 0.31 -2.02 16 26 H 0.04 0.67 6.46 -2.39 -0.02 0.65 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 0.83 7.96 -2.39 -0.02 0.81 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.40 11.87 4.66 -92.71 -0.43 11.44 16 32 H 0.13 3.98 6.43 -2.91 -0.02 3.96 16 33 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 35 H 0.09 4.90 6.69 -2.91 -0.02 4.88 16 36 H 0.28 16.45 6.67 -92.71 -0.62 15.84 16 37 H 0.12 2.20 8.11 -2.38 -0.02 2.19 16 38 H 0.09 1.99 7.06 -2.39 -0.02 1.97 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -70.69 337.17 3.39 -67.30 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: 0.76 Total: 36.87 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 4.19 Total: -36.29 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -2.28 Total: -73.61 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -1.34 Total: -43.53 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.06 Total: 49.25 kcal Total: -70.69 3.39 -67.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601607899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.395 kcal (2) G-P(sol) polarization free energy of solvation -70.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds