Wall clock time and date at job start Tue Mar 31 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 108.57986 * 2 1 4 4 O 1.42105 * 108.57544 * 228.98101 * 2 1 3 5 5 C 1.81391 * 101.92443 * 114.49142 * 2 1 3 6 6 C 1.53006 * 109.47235 * 180.02562 * 5 2 1 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 2 8 8 C 1.52996 * 109.47131 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47327 * 180.02562 * 8 7 6 10 10 C 1.46854 * 110.99404 * 294.20455 * 9 8 7 11 11 C 1.53035 * 109.52033 * 174.15823 * 10 9 8 12 12 C 1.53117 * 109.27632 * 59.18530 * 11 10 9 13 13 C 1.50705 * 109.57647 * 182.40795 * 12 11 10 14 14 H 1.07997 * 120.00160 * 119.71293 * 13 12 11 15 15 C 1.37882 * 119.99498 * 299.71409 * 13 12 11 16 16 N 1.31516 * 119.99712 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00328 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47267 * 90.00104 * 17 15 13 19 19 H 1.48498 * 109.46892 * 210.00472 * 17 15 13 20 20 H 1.48505 * 109.46743 * 330.00139 * 17 15 13 21 21 C 1.53125 * 109.16116 * 302.34057 * 12 11 10 22 22 C 1.46847 * 111.00382 * 169.99981 * 9 8 7 23 23 H 1.09006 * 109.46583 * 305.51025 * 1 2 3 24 24 H 1.08998 * 109.47248 * 65.50780 * 1 2 3 25 25 H 1.08994 * 109.47166 * 185.51231 * 1 2 3 26 26 H 1.09001 * 109.47423 * 60.00141 * 5 2 1 27 27 H 1.09001 * 109.47260 * 300.00004 * 5 2 1 28 28 H 1.09001 * 109.47002 * 299.99604 * 6 5 2 29 29 H 1.08993 * 109.46955 * 60.00042 * 6 5 2 30 30 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 31 31 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 32 32 H 1.09001 * 109.46997 * 299.99574 * 8 7 6 33 33 H 1.08992 * 109.47534 * 59.99520 * 8 7 6 34 34 H 1.08998 * 109.46338 * 294.17854 * 10 9 8 35 35 H 1.09001 * 109.46277 * 54.14866 * 10 9 8 36 36 H 1.08996 * 109.50754 * 299.24032 * 11 10 9 37 37 H 1.09001 * 109.50317 * 179.11892 * 11 10 9 38 38 H 1.08998 * 109.52887 * 62.24447 * 12 11 10 39 39 H 0.97002 * 119.99856 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.50048 * 297.71551 * 21 12 11 41 41 H 1.08997 * 109.50203 * 177.59887 * 21 12 11 42 42 H 1.08997 * 109.45965 * 305.85403 * 22 9 8 43 43 H 1.08998 * 109.45940 * 65.82643 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1888 -0.7357 1.6151 6 6 3.7056 -0.8185 1.7982 7 6 4.0217 -1.4396 3.1603 8 6 5.5384 -1.5218 3.3437 9 7 5.8419 -2.1188 4.6512 10 6 5.3994 -1.2439 5.7445 11 6 5.5979 -1.9582 7.0833 12 6 7.0782 -2.3104 7.2538 13 6 7.2722 -3.0665 8.5429 14 1 7.6748 -4.0685 8.5259 15 6 6.9357 -2.4789 9.7440 16 7 7.1055 -3.1385 10.8690 17 14 6.2401 -0.7455 9.7734 18 1 4.7598 -0.8043 9.6717 19 1 6.6230 -0.0800 11.0446 20 1 6.7848 0.0259 8.6273 21 6 7.5263 -3.1818 6.0771 22 6 7.2719 -2.4321 4.7675 23 1 -0.3633 0.5970 0.8366 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 1.7611 -1.7371 1.6663 27 1 1.7611 -0.1172 2.4042 28 1 4.1336 -1.4368 1.0092 29 1 4.1328 0.1829 1.7473 30 1 3.5936 -0.8217 3.9496 31 1 3.5944 -2.4412 3.2108 32 1 5.9669 -2.1395 2.5544 33 1 5.9653 -0.5202 3.2932 34 1 5.9844 -0.3243 5.7332 35 1 4.3441 -1.0045 5.6136 36 1 5.0024 -2.8709 7.1006 37 1 5.2840 -1.3027 7.8956 38 1 7.6702 -1.3954 7.2755 39 1 6.8691 -2.7250 11.7141 40 1 6.9611 -4.1139 6.0786 41 1 8.5900 -3.4005 6.1706 42 1 7.5766 -3.0555 3.9270 43 1 7.8480 -1.5068 4.7610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689862557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:46 Heat of formation + Delta-G solvation = -80.045593 kcal Electronic energy + Delta-G solvation = -21210.021872 eV Core-core repulsion = 17996.150304 eV Total energy + Delta-G solvation = -3213.871568 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.71116 -37.33926 -36.42398 -35.85640 -33.68428 -31.71289 -30.29891 -30.13427 -29.00184 -25.90552 -23.36438 -22.69992 -21.63852 -20.64882 -19.21349 -18.83170 -16.96450 -16.70858 -16.68442 -16.42903 -15.71430 -15.63352 -14.52956 -14.35162 -14.06000 -13.80806 -13.68158 -13.45066 -13.22348 -12.90592 -12.78742 -12.73494 -12.44463 -12.35140 -12.22871 -11.85048 -11.65990 -11.48572 -11.41013 -11.33025 -10.86972 -10.72832 -10.60675 -10.53163 -10.06111 -9.87884 -9.59603 -9.05749 -8.90905 -8.50572 -7.95642 -6.05146 -4.03225 -0.43111 2.33550 3.21479 3.26295 3.37009 3.39361 3.59094 4.06909 4.24809 4.30588 4.32134 4.42202 4.55339 4.86791 4.94895 5.14655 5.16430 5.25521 5.32559 5.39798 5.54584 5.56713 5.62588 5.72096 5.84464 5.91157 6.03010 6.11930 6.13691 6.22733 6.37595 6.46210 6.75526 6.84853 6.93724 7.23754 7.43409 7.52997 7.65485 7.81005 8.56084 8.99766 9.57981 11.08454 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031526 B = 0.002861 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.931622 B = 9782.980903 C =10279.679531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.419 3.581 3 O -0.941 6.941 4 O -0.941 6.941 5 C -0.606 4.606 6 C -0.111 4.111 7 C -0.110 4.110 8 C 0.051 3.949 9 N -0.534 5.534 10 C 0.052 3.948 11 C -0.116 4.116 12 C 0.012 3.988 13 C -0.509 4.509 14 H 0.073 0.927 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.888 3.112 18 H -0.279 1.279 19 H -0.298 1.298 20 H -0.267 1.267 21 C -0.096 4.096 22 C 0.057 3.943 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.024 0.976 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.021 0.979 39 H 0.263 0.737 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.243 6.241 -21.024 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.602 3.398 3 O -0.938 6.938 4 O -0.938 6.938 5 C -0.736 4.736 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.077 4.077 9 N -0.259 5.259 10 C -0.075 4.075 11 C -0.154 4.154 12 C -0.006 4.006 13 C -0.547 4.547 14 H 0.091 0.909 15 C -0.134 4.134 16 N -0.542 5.542 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.226 1.226 20 H -0.193 1.193 21 C -0.134 4.134 22 C -0.071 4.071 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.147 0.853 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -12.948 6.112 -21.460 25.798 hybrid contribution -0.742 1.440 0.815 1.814 sum -13.691 7.552 -20.645 25.897 Atomic orbital electron populations 1.30284 1.27135 1.11564 1.11728 1.07867 0.78165 0.75831 0.77927 1.93607 1.78941 1.34630 1.86649 1.93605 1.78945 1.66997 1.54249 1.30317 1.06644 1.14060 1.22549 1.21315 0.90138 1.03103 1.00470 1.21573 0.96386 1.01883 0.95005 1.22106 0.95478 0.97732 0.92403 1.61933 1.18058 1.44650 1.01273 1.22250 0.98977 0.93823 0.92473 1.22010 1.01012 0.99672 0.92684 1.19188 0.91206 0.95634 0.94620 1.21073 1.42360 1.02501 0.88764 0.90868 1.25036 0.95303 0.97401 0.95630 1.69906 1.48890 1.37623 0.97786 0.86840 0.79157 0.85614 0.76559 1.20616 1.22603 1.19268 1.21494 1.00260 0.99151 0.92499 1.22182 0.86755 0.98628 0.99518 0.85358 0.85361 0.85332 0.84769 0.84914 0.90057 0.90297 0.91370 0.90514 0.90910 0.95195 0.95760 0.91802 0.91305 0.93483 0.96113 0.92763 0.91806 0.92383 0.91828 0.95648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.90 10.62 101.05 1.07 -0.83 16 2 S 2.42 15.16 5.36 -107.50 -0.58 14.58 16 3 O -0.94 -9.78 18.10 -57.83 -1.05 -10.83 16 4 O -0.94 -9.62 18.10 -57.83 -1.05 -10.67 16 5 C -0.61 -3.19 5.81 37.16 0.22 -2.97 16 6 C -0.11 -0.92 5.22 -26.73 -0.14 -1.06 16 7 C -0.11 -1.13 5.14 -26.73 -0.14 -1.26 16 8 C 0.05 0.64 4.96 -3.82 -0.02 0.62 16 9 N -0.53 -8.58 4.66 -234.67 -1.09 -9.68 16 10 C 0.05 0.92 5.29 -3.83 -0.02 0.90 16 11 C -0.12 -2.49 4.84 -26.65 -0.13 -2.62 16 12 C 0.01 0.29 1.75 -91.64 -0.16 0.13 16 13 C -0.51 -14.30 9.15 -34.44 -0.31 -14.62 16 14 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 16 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 17 Si 0.89 22.02 24.37 -169.99 -4.14 17.88 16 18 H -0.28 -6.69 6.89 56.52 0.39 -6.31 16 19 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.27 -6.38 6.53 56.52 0.37 -6.02 16 21 C -0.10 -1.92 5.32 -26.65 -0.14 -2.06 16 22 C 0.06 0.94 5.46 -3.84 -0.02 0.92 16 23 H 0.13 0.18 8.14 -51.92 -0.42 -0.25 16 24 H 0.13 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.13 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.13 0.47 8.14 -51.92 -0.42 0.04 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.83 7.99 -51.93 -0.41 0.42 16 33 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.98 6.21 -51.93 -0.32 0.66 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.05 1.06 3.39 -51.93 -0.18 0.89 16 38 H 0.02 0.51 7.19 -51.93 -0.37 0.13 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.92 8.01 -51.93 -0.42 0.51 16 43 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -36.54 343.55 -9.40 -45.94 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -7.55 Total: -4.40 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 0.11 Total: -20.99 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.32 Total: -36.69 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -2.09 Total: -21.50 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.88 kcal Atomic # 16 Polarization: 15.16 SS G_CDS: -0.58 Total: 14.58 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.54 -9.40 -45.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689862557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.104 kcal (2) G-P(sol) polarization free energy of solvation -36.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds