Wall clock time and date at job start Tue Mar 31 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 108.57986 * 2 1 4 4 O 1.42105 * 108.57544 * 228.98101 * 2 1 3 5 5 C 1.81391 * 101.92443 * 114.49142 * 2 1 3 6 6 C 1.53006 * 109.47235 * 180.02562 * 5 2 1 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 2 8 8 C 1.52996 * 109.47131 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47327 * 180.02562 * 8 7 6 10 10 C 1.46854 * 110.99404 * 294.20455 * 9 8 7 11 11 C 1.53035 * 109.52033 * 174.15823 * 10 9 8 12 12 C 1.53117 * 109.27632 * 59.18530 * 11 10 9 13 13 C 1.50705 * 109.57647 * 182.40795 * 12 11 10 14 14 H 1.07997 * 120.00160 * 119.71293 * 13 12 11 15 15 C 1.37882 * 119.99498 * 299.71409 * 13 12 11 16 16 N 1.31516 * 119.99712 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00328 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47267 * 90.00104 * 17 15 13 19 19 H 1.48498 * 109.46892 * 210.00472 * 17 15 13 20 20 H 1.48505 * 109.46743 * 330.00139 * 17 15 13 21 21 C 1.53125 * 109.16116 * 302.34057 * 12 11 10 22 22 C 1.46847 * 111.00382 * 169.99981 * 9 8 7 23 23 H 1.09006 * 109.46583 * 305.51025 * 1 2 3 24 24 H 1.08998 * 109.47248 * 65.50780 * 1 2 3 25 25 H 1.08994 * 109.47166 * 185.51231 * 1 2 3 26 26 H 1.09001 * 109.47423 * 60.00141 * 5 2 1 27 27 H 1.09001 * 109.47260 * 300.00004 * 5 2 1 28 28 H 1.09001 * 109.47002 * 299.99604 * 6 5 2 29 29 H 1.08993 * 109.46955 * 60.00042 * 6 5 2 30 30 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 31 31 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 32 32 H 1.09001 * 109.46997 * 299.99574 * 8 7 6 33 33 H 1.08992 * 109.47534 * 59.99520 * 8 7 6 34 34 H 1.08998 * 109.46338 * 294.17854 * 10 9 8 35 35 H 1.09001 * 109.46277 * 54.14866 * 10 9 8 36 36 H 1.08996 * 109.50754 * 299.24032 * 11 10 9 37 37 H 1.09001 * 109.50317 * 179.11892 * 11 10 9 38 38 H 1.08998 * 109.52887 * 62.24447 * 12 11 10 39 39 H 0.97002 * 119.99856 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.50048 * 297.71551 * 21 12 11 41 41 H 1.08997 * 109.50203 * 177.59887 * 21 12 11 42 42 H 1.08997 * 109.45965 * 305.85403 * 22 9 8 43 43 H 1.08998 * 109.45940 * 65.82643 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1888 -0.7357 1.6151 6 6 3.7056 -0.8185 1.7982 7 6 4.0217 -1.4396 3.1603 8 6 5.5384 -1.5218 3.3437 9 7 5.8419 -2.1188 4.6512 10 6 5.3994 -1.2439 5.7445 11 6 5.5979 -1.9582 7.0833 12 6 7.0782 -2.3104 7.2538 13 6 7.2722 -3.0665 8.5429 14 1 7.6748 -4.0685 8.5259 15 6 6.9357 -2.4789 9.7440 16 7 7.1055 -3.1385 10.8690 17 14 6.2401 -0.7455 9.7734 18 1 4.7598 -0.8043 9.6717 19 1 6.6230 -0.0800 11.0446 20 1 6.7848 0.0259 8.6273 21 6 7.5263 -3.1818 6.0771 22 6 7.2719 -2.4321 4.7675 23 1 -0.3633 0.5970 0.8366 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 1.7611 -1.7371 1.6663 27 1 1.7611 -0.1172 2.4042 28 1 4.1336 -1.4368 1.0092 29 1 4.1328 0.1829 1.7473 30 1 3.5936 -0.8217 3.9496 31 1 3.5944 -2.4412 3.2108 32 1 5.9669 -2.1395 2.5544 33 1 5.9653 -0.5202 3.2932 34 1 5.9844 -0.3243 5.7332 35 1 4.3441 -1.0045 5.6136 36 1 5.0024 -2.8709 7.1006 37 1 5.2840 -1.3027 7.8956 38 1 7.6702 -1.3954 7.2755 39 1 6.8691 -2.7250 11.7141 40 1 6.9611 -4.1139 6.0786 41 1 8.5900 -3.4005 6.1706 42 1 7.5766 -3.0555 3.9270 43 1 7.8480 -1.5068 4.7610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689862557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:45 Heat of formation + Delta-G solvation = -108.754827 kcal Electronic energy + Delta-G solvation = -21211.266798 eV Core-core repulsion = 17996.150304 eV Total energy + Delta-G solvation = -3215.116494 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.07532 -37.94145 -37.07829 -36.83370 -35.17466 -33.52168 -31.77150 -30.53975 -29.93747 -27.49553 -24.54923 -24.16038 -22.90291 -21.69072 -20.47084 -19.71218 -18.82895 -17.46081 -17.33881 -17.22272 -16.82536 -16.39410 -16.08762 -15.64405 -15.33423 -14.92198 -14.84297 -14.25657 -14.12636 -14.00446 -13.87143 -13.69555 -13.46853 -13.29068 -13.07824 -12.98391 -12.83344 -12.78724 -12.34814 -12.33074 -12.13949 -11.93022 -11.90095 -11.69392 -11.59308 -11.27534 -11.18192 -10.95804 -10.75551 -10.59004 -9.19912 -8.29477 -6.32568 -0.85867 1.28610 1.34659 1.45239 1.95527 2.32433 2.75843 3.01286 3.05739 3.18633 3.67988 3.88087 4.04337 4.09243 4.14439 4.19591 4.26239 4.29472 4.34452 4.42150 4.50754 4.63201 4.68672 4.71569 4.78561 4.79357 4.83787 4.91696 4.97494 5.01302 5.04275 5.19074 5.26345 5.30223 5.39363 5.53088 5.68278 5.78650 6.19134 6.30102 6.33478 6.74544 7.32593 8.87781 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031526 B = 0.002861 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.931622 B = 9782.980903 C =10279.679531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.639 4.639 2 S 2.421 3.579 3 O -0.992 6.992 4 O -0.990 6.990 5 C -0.598 4.598 6 C -0.119 4.119 7 C -0.105 4.105 8 C 0.048 3.952 9 N -0.543 5.543 10 C 0.059 3.941 11 C -0.114 4.114 12 C 0.010 3.990 13 C -0.517 4.517 14 H 0.031 0.969 15 C 0.008 3.992 16 N -0.953 5.953 17 Si 0.953 3.047 18 H -0.262 1.262 19 H -0.300 1.300 20 H -0.251 1.251 21 C -0.093 4.093 22 C 0.064 3.936 23 H 0.151 0.849 24 H 0.133 0.867 25 H 0.152 0.848 26 H 0.159 0.841 27 H 0.157 0.843 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.033 0.967 34 H 0.025 0.975 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.014 0.986 39 H 0.265 0.735 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.674 7.729 -22.716 28.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.792 4.792 2 S 2.610 3.390 3 O -0.989 6.989 4 O -0.988 6.988 5 C -0.728 4.728 6 C -0.158 4.158 7 C -0.144 4.144 8 C -0.080 4.080 9 N -0.268 5.268 10 C -0.069 4.069 11 C -0.151 4.151 12 C -0.009 4.009 13 C -0.555 4.555 14 H 0.049 0.951 15 C -0.189 4.189 16 N -0.594 5.594 17 Si 0.780 3.220 18 H -0.188 1.188 19 H -0.228 1.228 20 H -0.175 1.175 21 C -0.131 4.131 22 C -0.064 4.064 23 H 0.170 0.830 24 H 0.152 0.848 25 H 0.171 0.829 26 H 0.177 0.823 27 H 0.175 0.825 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -15.346 7.603 -23.203 28.839 hybrid contribution 0.024 0.839 1.369 1.606 sum -15.321 8.443 -21.834 27.978 Atomic orbital electron populations 1.30093 1.22073 1.13818 1.13167 1.07436 0.79805 0.74117 0.77659 1.93541 1.81081 1.36921 1.87382 1.93541 1.81057 1.67623 1.56538 1.30225 1.04843 1.15932 1.21850 1.21334 0.92397 1.02736 0.99359 1.21528 0.94612 1.02201 0.96048 1.22250 0.97338 0.97854 0.90515 1.61909 1.17371 1.45015 1.02504 1.22137 1.00828 0.93220 0.90666 1.21857 0.98671 0.99469 0.95129 1.19166 0.93029 0.95168 0.93518 1.21419 1.41440 1.01239 0.91387 0.95108 1.25933 0.95817 1.02057 0.95056 1.70064 1.50773 1.39904 0.98612 0.85779 0.79312 0.80077 0.76861 1.18766 1.22785 1.17474 1.21398 0.99759 0.98514 0.93421 1.22075 0.87606 0.98671 0.98035 0.83027 0.84833 0.82916 0.82252 0.82535 0.90152 0.90707 0.91204 0.90345 0.89750 0.94885 0.95717 0.89079 0.92479 0.94425 0.96743 0.92634 0.93027 0.92773 0.89284 0.95361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.30 10.62 113.37 1.20 -0.10 16 2 S 2.42 26.25 5.36 -56.49 -0.30 25.94 16 3 O -0.99 -20.03 18.10 -127.37 -2.31 -22.33 16 4 O -0.99 -19.68 18.10 -127.37 -2.31 -21.98 16 5 C -0.60 -4.26 5.81 71.98 0.42 -3.84 16 6 C -0.12 -1.65 5.22 30.60 0.16 -1.49 16 7 C -0.11 -1.80 5.14 30.59 0.16 -1.64 16 8 C 0.05 1.05 4.96 86.30 0.43 1.48 16 9 N -0.54 -15.91 4.66 -896.37 -4.17 -20.09 16 10 C 0.06 1.90 5.29 86.32 0.46 2.35 16 11 C -0.11 -4.70 4.84 30.65 0.15 -4.55 16 12 C 0.01 0.47 1.75 -11.46 -0.02 0.45 16 13 C -0.52 -30.00 9.15 25.60 0.23 -29.76 16 14 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 15 C 0.01 0.46 5.45 84.66 0.46 0.92 16 16 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 17 Si 0.95 45.37 24.37 68.60 1.67 47.05 16 18 H -0.26 -11.67 6.89 99.48 0.69 -10.99 16 19 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 20 H -0.25 -11.14 6.53 99.48 0.65 -10.49 16 21 C -0.09 -3.68 5.32 30.65 0.16 -3.52 16 22 C 0.06 1.98 5.46 86.32 0.47 2.45 16 23 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 24 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.15 -0.33 8.14 -2.39 -0.02 -0.35 16 26 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.16 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.18 6.43 -2.39 -0.02 1.16 16 31 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.08 1.66 7.99 -2.39 -0.02 1.64 16 33 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 2.44 6.21 -2.39 -0.01 2.43 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.04 1.62 3.39 -2.39 -0.01 1.61 16 38 H 0.01 0.69 7.19 -2.39 -0.02 0.68 16 39 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 40 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.09 2.33 8.01 -2.39 -0.02 2.31 16 43 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -82.44 343.55 -1.95 -84.39 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 0.88 Total: 4.47 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 4.28 Total: -37.26 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -3.88 Total: -80.28 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -4.61 Total: -44.32 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.67 Total: 47.05 kcal Atomic # 16 Polarization: 26.25 SS G_CDS: -0.30 Total: 25.94 kcal Total: -82.44 -1.95 -84.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689862557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.362 kcal (2) G-P(sol) polarization free energy of solvation -82.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds