Wall clock time and date at job start Tue Mar 31 2020 05:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00157 * 2 1 4 4 O 1.20823 * 120.00131 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00024 * 180.02562 * 3 2 1 6 6 C 1.50701 * 109.47184 * 180.02562 * 5 3 2 7 7 C 1.38254 * 120.00061 * 265.55005 * 6 5 3 8 8 C 1.38210 * 119.99973 * 180.23104 * 7 6 5 9 9 C 1.38264 * 120.00042 * 359.81331 * 8 7 6 10 10 C 1.38211 * 119.99684 * 359.97379 * 9 8 7 11 11 C 1.38216 * 119.99885 * 85.34069 * 6 5 3 12 12 C 1.50698 * 119.99720 * 359.97438 * 11 6 5 13 13 N 1.46506 * 109.46855 * 183.97686 * 12 11 6 14 14 C 1.36937 * 119.99765 * 90.88008 * 13 12 11 15 15 H 1.08005 * 120.00148 * 28.40978 * 14 13 12 16 16 C 1.38812 * 120.00239 * 208.40722 * 14 13 12 17 17 N 1.31628 * 119.99614 * 22.44502 * 16 14 13 18 18 Si 1.86791 * 120.00120 * 202.44783 * 16 14 13 19 19 H 1.48502 * 109.46958 * 269.99588 * 18 16 14 20 20 H 1.48494 * 109.47416 * 29.99834 * 18 16 14 21 21 H 1.48508 * 109.47211 * 150.00243 * 18 16 14 22 22 C 1.46496 * 120.00091 * 270.88169 * 13 12 11 23 23 C 1.53002 * 117.50004 * 9.46606 * 22 13 12 24 24 C 1.53005 * 117.49861 * 300.80559 * 22 13 12 25 25 H 1.08996 * 109.47657 * 59.99369 * 1 2 3 26 26 H 1.08993 * 109.47401 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46918 * 299.99791 * 1 2 3 28 28 H 1.09005 * 109.46559 * 60.00130 * 5 3 2 29 29 H 1.08994 * 109.47294 * 300.00410 * 5 3 2 30 30 H 1.08001 * 120.00349 * 0.06287 * 7 6 5 31 31 H 1.08003 * 120.00574 * 179.83289 * 8 7 6 32 32 H 1.07999 * 120.00011 * 180.02562 * 9 8 7 33 33 H 1.08001 * 119.99955 * 180.02562 * 10 9 8 34 34 H 1.09001 * 109.47210 * 63.98115 * 12 11 6 35 35 H 1.08999 * 109.47408 * 303.97819 * 12 11 6 36 36 H 0.96991 * 119.99784 * 174.94913 * 17 16 14 37 37 H 1.09000 * 115.54942 * 155.13847 * 22 13 12 38 38 H 1.09000 * 117.49758 * 0.02562 * 23 22 13 39 39 H 1.08996 * 117.49917 * 145.02593 * 23 22 13 40 40 H 1.08998 * 117.49849 * 214.98579 * 24 22 13 41 41 H 1.08999 * 117.49404 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 3.9937 2.7199 0.0002 7 6 4.2783 3.3573 -1.1932 8 6 4.6748 4.6813 -1.1921 9 6 4.7832 5.3695 0.0021 10 6 4.4944 4.7336 1.1948 11 6 4.0969 3.4094 1.1936 12 6 3.7816 2.7162 2.4940 13 7 3.8731 3.6783 3.5950 14 6 2.7639 4.3804 3.9847 15 1 1.7804 3.9551 3.8494 16 6 2.9035 5.6389 4.5536 17 7 3.9922 6.3444 4.3315 18 14 1.5463 6.3310 5.6344 19 1 0.5841 7.0900 4.7957 20 1 0.8384 5.2168 6.3146 21 1 2.1373 7.2367 6.6522 22 6 5.1513 3.8893 4.2791 23 6 6.3966 3.2486 3.6628 24 6 5.8005 2.6784 4.9523 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9556 0.7808 -0.8909 29 1 3.9564 0.7805 0.8890 30 1 4.1934 2.8198 -2.1262 31 1 4.8998 5.1785 -2.1242 32 1 5.0926 6.4042 0.0029 33 1 4.5786 5.2713 2.1276 34 1 4.4948 1.9082 2.6573 35 1 2.7722 2.3069 2.4521 36 1 4.0591 7.2517 4.6677 37 1 5.2711 4.8585 4.7631 38 1 6.2649 2.6706 2.7482 39 1 7.3357 3.7962 3.7418 40 1 6.3477 2.8511 5.8790 41 1 5.2764 1.7250 4.8866 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706762211.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:02 Heat of formation + Delta-G solvation = -20.034119 kcal Electronic energy + Delta-G solvation = -23704.408426 eV Core-core repulsion = 20357.695199 eV Total energy + Delta-G solvation = -3346.713227 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62275 -40.27082 -38.55294 -37.43888 -35.07331 -34.23330 -33.33851 -31.12089 -29.69602 -27.87139 -27.15461 -25.40397 -23.20193 -22.89738 -22.53520 -21.36888 -20.83224 -18.88728 -18.62184 -17.70870 -17.56684 -17.11860 -16.67960 -16.57270 -15.97865 -15.60013 -15.21390 -14.69477 -14.54280 -14.41622 -14.22122 -13.91038 -13.67346 -13.25405 -13.04757 -12.99162 -12.90993 -12.78053 -12.57238 -12.30150 -12.16710 -12.05391 -11.84493 -11.77159 -11.57667 -11.53936 -11.19258 -11.02219 -10.39852 -9.51245 -9.30630 -8.54400 -7.86600 -5.35631 0.50008 0.76009 1.24184 1.43190 1.46074 1.54766 1.88987 2.47481 3.08034 3.17847 3.44203 3.49945 3.69189 4.07591 4.11094 4.23738 4.32135 4.33412 4.37320 4.39398 4.42393 4.52210 4.58741 4.62992 4.70643 4.72101 4.78736 4.81902 4.92025 5.09070 5.16414 5.28377 5.40856 5.44040 5.48694 5.61757 5.67942 5.83367 5.94206 6.08248 6.38882 6.40585 6.79843 7.15920 7.82205 8.28786 9.12813 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012879 B = 0.006261 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.547517 B = 4471.262333 C = 5017.800881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.534 6.534 5 C -0.065 4.065 6 C -0.096 4.096 7 C -0.117 4.117 8 C -0.132 4.132 9 C -0.141 4.141 10 C -0.115 4.115 11 C -0.092 4.092 12 C 0.180 3.820 13 N -0.560 5.560 14 C -0.265 4.265 15 H 0.052 0.948 16 C -0.030 4.030 17 N -0.911 5.911 18 Si 0.956 3.044 19 H -0.291 1.291 20 H -0.276 1.276 21 H -0.286 1.286 22 C 0.125 3.875 23 C -0.198 4.198 24 C -0.221 4.221 25 H 0.061 0.939 26 H 0.136 0.864 27 H 0.049 0.951 28 H 0.151 0.849 29 H 0.125 0.875 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.114 0.886 33 H 0.132 0.868 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.254 0.746 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.204 -12.035 -10.245 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.304 3.696 4 O -0.423 6.423 5 C -0.102 4.102 6 C -0.097 4.097 7 C -0.134 4.134 8 C -0.150 4.150 9 C -0.159 4.159 10 C -0.133 4.133 11 C -0.094 4.094 12 C 0.054 3.946 13 N -0.277 5.277 14 C -0.395 4.395 15 H 0.070 0.930 16 C -0.227 4.227 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.218 1.218 20 H -0.202 1.202 21 H -0.212 1.212 22 C 0.017 3.983 23 C -0.236 4.236 24 C -0.261 4.261 25 H 0.080 0.920 26 H 0.154 0.846 27 H 0.068 0.932 28 H 0.169 0.831 29 H 0.142 0.858 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.133 0.867 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.982 -11.615 -10.120 15.437 hybrid contribution -1.030 1.082 0.758 1.676 sum -0.048 -10.533 -9.362 14.093 Atomic orbital electron populations 1.23493 0.75301 1.05608 1.02040 1.86481 1.24585 1.32683 1.84074 1.24180 0.92793 0.81099 0.71553 1.90731 1.67988 1.37688 1.45884 1.20376 0.86313 0.94900 1.08637 1.19331 1.02165 0.95065 0.93106 1.21177 0.99805 0.95062 0.97399 1.21290 1.00904 0.95011 0.97815 1.21356 1.01349 0.99960 0.93256 1.21701 0.96613 0.95309 0.99712 1.20834 0.97439 0.95017 0.96116 1.19931 0.98190 0.91891 0.84542 1.43502 1.06127 1.44704 1.33326 1.19161 0.86829 0.97774 1.35715 0.92979 1.25504 0.99201 0.95871 1.02155 1.69888 1.29021 1.08917 1.47766 0.85462 0.79229 0.77840 0.79031 1.21798 1.20162 1.21170 1.21500 0.83125 0.96085 0.97613 1.23160 0.98472 1.05430 0.96568 1.23444 1.06288 1.00532 0.95873 0.91990 0.84552 0.93239 0.83112 0.85753 0.83420 0.83909 0.86742 0.85060 0.90905 0.94135 0.93609 0.86676 0.89517 0.89294 0.89189 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -9.02 10.56 -51.39 -0.54 -9.56 16 3 C 0.46 13.78 7.48 71.24 0.53 14.32 16 4 O -0.53 -20.99 15.78 21.97 0.35 -20.65 16 5 C -0.07 -1.62 5.42 29.10 0.16 -1.46 16 6 C -0.10 -3.16 4.37 -19.87 -0.09 -3.25 16 7 C -0.12 -3.44 9.68 22.27 0.22 -3.23 16 8 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 9 C -0.14 -5.48 10.05 22.27 0.22 -5.26 16 10 C -0.12 -5.24 9.17 22.27 0.20 -5.04 16 11 C -0.09 -3.76 5.57 -19.87 -0.11 -3.87 16 12 C 0.18 7.63 4.06 85.63 0.35 7.98 16 13 N -0.56 -27.69 1.64 -682.32 -1.12 -28.81 16 14 C -0.26 -14.74 9.22 84.03 0.77 -13.96 16 15 H 0.05 3.00 7.92 -2.91 -0.02 2.97 16 16 C -0.03 -1.67 5.03 84.86 0.43 -1.24 16 17 N -0.91 -51.38 10.07 21.65 0.22 -51.16 16 18 Si 0.96 45.39 29.61 68.60 2.03 47.43 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 C 0.13 5.87 5.07 44.99 0.23 6.09 16 23 C -0.20 -7.62 9.72 30.62 0.30 -7.32 16 24 C -0.22 -8.51 10.10 30.62 0.31 -8.20 16 25 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 26 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 1.14 8.13 -2.39 -0.02 1.13 16 28 H 0.15 2.41 8.06 -2.38 -0.02 2.39 16 29 H 0.12 2.78 6.94 -2.39 -0.02 2.76 16 30 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 32 H 0.11 4.19 8.06 -2.91 -0.02 4.16 16 33 H 0.13 7.03 5.19 -2.91 -0.02 7.01 16 34 H 0.07 2.71 5.91 -2.39 -0.01 2.70 16 35 H 0.04 1.81 7.48 -2.39 -0.02 1.79 16 36 H 0.25 13.94 8.32 -92.72 -0.77 13.16 16 37 H 0.12 6.20 5.55 -2.39 -0.01 6.18 16 38 H 0.09 3.21 6.26 -2.39 -0.01 3.20 16 39 H 0.09 3.21 8.14 -2.39 -0.02 3.20 16 40 H 0.09 3.18 8.14 -2.39 -0.02 3.17 16 41 H 0.08 3.06 8.06 -2.39 -0.02 3.04 16 Total: -1.00 -67.95 339.10 6.90 -61.05 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 1.03 Total: 28.31 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 4.94 Total: -26.60 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -0.90 Total: -79.98 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.20 Total: -30.21 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.43 kcal Total: -67.95 6.90 -61.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706762211.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.012 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds