Wall clock time and date at job start Tue Mar 31 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 N 1.46297 * 113.99676 * 2 1 4 4 C 1.46903 * 110.99739 * 248.08202 * 3 2 1 5 5 C 1.53006 * 109.46496 * 66.05709 * 4 3 2 6 6 C 1.53003 * 109.46750 * 179.97438 * 5 4 3 7 7 S 1.81001 * 109.46937 * 179.97438 * 6 5 4 8 8 C 1.76199 * 99.99829 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00188 * 359.97438 * 8 7 6 10 10 C 1.38806 * 119.99677 * 180.02562 * 8 7 6 11 11 N 1.31629 * 119.99486 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00086 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47116 * 90.00674 * 12 10 8 14 14 H 1.48503 * 109.47095 * 210.00309 * 12 10 8 15 15 H 1.48494 * 109.47479 * 330.00173 * 12 10 8 16 16 C 1.46903 * 110.99465 * 124.13766 * 3 2 1 17 17 C 1.52996 * 109.47125 * 296.47124 * 16 3 2 18 18 C 1.53181 * 109.54448 * 174.95181 * 17 16 3 19 19 C 1.53089 * 109.16622 * 176.84925 * 18 17 16 20 20 O 1.42902 * 109.41393 * 302.39461 * 19 18 17 21 21 C 1.42910 * 114.09750 * 61.15632 * 20 19 18 22 22 C 1.53085 * 109.41521 * 298.83860 * 21 20 19 23 23 H 1.09001 * 109.47110 * 294.86113 * 1 2 3 24 24 H 1.09006 * 109.46641 * 54.86080 * 1 2 3 25 25 H 1.08997 * 109.47159 * 174.86083 * 1 2 3 26 26 H 1.08996 * 109.46805 * 186.04559 * 4 3 2 27 27 H 1.08995 * 109.47658 * 306.05394 * 4 3 2 28 28 H 1.08996 * 109.46655 * 299.98942 * 5 4 3 29 29 H 1.08995 * 109.47425 * 59.99542 * 5 4 3 30 30 H 1.09002 * 109.47036 * 299.99748 * 6 5 4 31 31 H 1.09000 * 109.46978 * 59.99977 * 6 5 4 32 32 H 0.97003 * 119.99630 * 179.97438 * 11 10 8 33 33 H 1.09005 * 109.46954 * 176.47294 * 16 3 2 34 34 H 1.09002 * 109.47471 * 56.47936 * 16 3 2 35 35 H 1.09005 * 109.61059 * 54.73747 * 17 16 3 36 36 H 1.09006 * 109.52164 * 296.75876 * 18 17 16 37 37 H 1.09004 * 109.52013 * 56.94463 * 18 17 16 38 38 H 1.08999 * 109.47978 * 182.41005 * 19 18 17 39 39 H 1.09004 * 109.47509 * 62.37693 * 19 18 17 40 40 H 1.08998 * 109.47889 * 178.85309 * 21 20 19 41 41 H 1.09003 * 109.49006 * 58.83074 * 21 20 19 42 42 H 1.08998 * 109.52354 * 297.70594 * 22 21 20 43 43 H 1.08996 * 109.52295 * 177.51321 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.7058 1.6092 -1.2723 5 6 1.6743 1.6701 -2.4007 6 6 2.3842 1.9548 -3.7258 7 16 1.1640 2.0261 -5.0608 8 6 2.2254 2.3556 -6.4281 9 1 3.2902 2.4504 -6.2746 10 6 1.6928 2.4944 -7.7024 11 7 2.4857 2.7411 -8.7237 12 14 -0.1489 2.3311 -7.9678 13 1 -0.7897 3.6631 -7.8247 14 1 -0.4076 1.8013 -9.3308 15 1 -0.7138 1.3991 -6.9591 16 6 2.9413 1.5043 1.1352 17 6 2.1573 1.3963 2.4446 18 6 3.1280 1.4449 3.6286 19 6 2.3297 1.4155 4.9345 20 8 1.4162 2.5142 4.9577 21 6 0.4544 2.4957 3.9008 22 6 1.1773 2.5685 2.5534 23 1 -0.3633 0.4321 0.9324 24 1 -0.3633 0.5915 -0.8404 25 1 -0.3633 -1.0235 -0.0921 26 1 3.2293 2.5630 -1.2069 27 1 3.4229 0.8145 -1.4780 28 1 1.1508 0.7163 -2.4662 29 1 0.9572 2.4648 -2.1950 30 1 2.9075 2.9087 -3.6601 31 1 3.1015 1.1603 -3.9317 32 1 2.1136 2.8377 -9.6143 33 1 3.4170 2.4833 1.0763 34 1 3.7047 0.7270 1.1035 35 1 1.6053 0.4565 2.4640 36 1 3.7940 0.5828 3.5892 37 1 3.7148 2.3622 3.5810 38 1 3.0131 1.4930 5.7801 39 1 1.7746 0.4797 5.0001 40 1 -0.2132 3.3513 4.0020 41 1 -0.1255 1.5741 3.9529 42 1 1.7248 3.5085 2.4842 43 1 0.4483 2.5101 1.7453 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801603494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:07 Heat of formation + Delta-G solvation = -70.249026 kcal Electronic energy + Delta-G solvation = -21107.969883 eV Core-core repulsion = 17894.523126 eV Total energy + Delta-G solvation = -3213.446757 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.75137 -37.75698 -34.99457 -34.40472 -32.44293 -31.70508 -31.35093 -27.51408 -26.38847 -25.67073 -24.31899 -23.75335 -22.01920 -21.20671 -20.22831 -17.48190 -16.99566 -16.46396 -16.21180 -15.95584 -15.43680 -15.02530 -14.97927 -14.75819 -14.57410 -14.13435 -13.89142 -13.51907 -13.09276 -12.96578 -12.86182 -12.56019 -12.23485 -12.08483 -11.92079 -11.61548 -11.43467 -11.13294 -11.06545 -11.00996 -10.84820 -10.57069 -10.47842 -10.23072 -9.95490 -9.83406 -9.70566 -9.00970 -8.77996 -8.56983 -6.94577 -6.28813 -4.00955 2.53626 3.01440 3.29662 3.44991 3.57238 3.59766 4.21144 4.31350 4.44904 4.55406 4.73341 4.74897 4.86823 4.96958 5.09841 5.10482 5.13448 5.20673 5.22048 5.30044 5.38526 5.43190 5.47670 5.51547 5.54334 5.58829 5.60591 5.67658 5.69240 5.79629 5.81306 5.85822 5.98690 6.11918 6.22492 6.46287 6.55601 6.71806 6.90605 6.95658 7.95048 8.43915 9.17107 10.80738 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036905 B = 0.002708 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.521809 B =10336.457886 C =10543.693825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.262 6.262 3 N -0.362 5.362 4 C 0.044 3.956 5 C -0.094 4.094 6 C -0.082 4.082 7 S -0.214 6.214 8 C -0.502 4.502 9 H 0.088 0.912 10 C 0.091 3.909 11 N -0.882 5.882 12 Si 0.862 3.138 13 H -0.268 1.268 14 H -0.276 1.276 15 H -0.238 1.238 16 C 0.049 3.951 17 C -0.082 4.082 18 C -0.152 4.152 19 C 0.063 3.937 20 O -0.386 6.386 21 C 0.059 3.941 22 C -0.144 4.144 23 H 0.038 0.962 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.270 0.730 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 -3.298 26.230 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 N -0.130 5.130 4 C -0.086 4.086 5 C -0.133 4.133 6 C -0.231 4.231 7 S 0.014 5.986 8 C -0.650 4.650 9 H 0.106 0.894 10 C -0.117 4.117 11 N -0.519 5.519 12 Si 0.687 3.313 13 H -0.194 1.194 14 H -0.201 1.201 15 H -0.162 1.162 16 C -0.079 4.079 17 C -0.101 4.101 18 C -0.190 4.190 19 C -0.014 4.014 20 O -0.305 6.305 21 C -0.017 4.017 22 C -0.182 4.182 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.335 -3.118 26.230 26.625 hybrid contribution 1.238 -0.510 -0.908 1.617 sum -2.097 -3.628 25.323 25.667 Atomic orbital electron populations 1.22656 0.80940 1.01622 1.00549 1.90672 1.20591 1.18608 1.96810 1.67650 1.33857 1.08256 1.03260 1.22530 0.96421 1.01071 0.88531 1.21266 0.97560 1.02980 0.91449 1.23011 1.00754 1.03373 0.95981 1.84142 1.16497 1.94531 1.03459 1.22127 0.95423 1.55768 0.91641 0.89435 1.24803 0.98683 0.93399 0.94831 1.69940 1.35465 1.46779 0.99719 0.86661 0.85187 0.80279 0.79165 1.19357 1.20121 1.16173 1.22431 0.93836 1.01632 0.90024 1.21118 0.96410 0.99592 0.93005 1.22232 0.98621 1.03050 0.95082 1.22534 0.91809 0.89574 0.97499 1.87924 1.45348 1.47310 1.49892 1.22630 0.90657 1.01778 0.86680 1.22178 0.99565 0.98635 0.97805 0.94298 0.92964 0.89815 0.89216 0.93317 0.91179 0.90932 0.91426 0.91514 0.91980 0.89079 0.93465 0.90494 0.90918 0.90889 0.88998 0.93322 0.88936 0.93416 0.91191 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 11.20 101.05 1.13 1.55 16 2 O -0.26 -3.38 9.75 -13.92 -0.14 -3.52 16 3 N -0.36 -4.28 4.26 -113.77 -0.49 -4.76 16 4 C 0.04 0.57 5.28 -3.82 -0.02 0.55 16 5 C -0.09 -1.46 4.90 -26.73 -0.13 -1.59 16 6 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 7 S -0.21 -5.24 19.41 -107.50 -2.09 -7.32 16 8 C -0.50 -14.63 10.04 30.94 0.31 -14.32 16 9 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 10 C 0.09 2.67 5.50 -17.43 -0.10 2.58 16 11 N -0.88 -26.87 13.97 55.49 0.78 -26.09 16 12 Si 0.86 21.61 27.74 -169.99 -4.71 16.89 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 16 C 0.05 0.47 4.67 -3.82 -0.02 0.46 16 17 C -0.08 -0.71 2.31 -90.44 -0.21 -0.92 16 18 C -0.15 -1.11 5.42 -26.59 -0.14 -1.26 16 19 C 0.06 0.47 6.84 37.20 0.25 0.72 16 20 O -0.39 -3.74 10.77 -35.23 -0.38 -4.12 16 21 C 0.06 0.48 6.84 37.20 0.25 0.74 16 22 C -0.14 -1.24 5.27 -26.59 -0.14 -1.38 16 23 H 0.04 0.36 8.05 -51.93 -0.42 -0.06 16 24 H 0.05 0.60 7.25 -51.93 -0.38 0.22 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.04 7.97 -51.93 -0.41 0.63 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.15 7.09 -51.93 -0.37 0.78 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 31 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 32 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.09 0.80 7.98 -51.93 -0.41 0.38 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.74 7.61 -51.93 -0.40 0.35 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.78 7.77 -51.93 -0.40 0.37 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -31.71 356.71 -8.11 -39.82 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.86 Total: -2.03 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 1.40 Total: -14.25 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.29 Total: -30.85 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.52 Total: -7.63 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.09 Total: -7.32 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.71 -8.11 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801603494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.428 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds