Wall clock time and date at job start Tue Mar 31 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 N 1.46297 * 113.99676 * 2 1 4 4 C 1.46903 * 110.99739 * 248.08202 * 3 2 1 5 5 C 1.53006 * 109.46496 * 66.05709 * 4 3 2 6 6 C 1.53003 * 109.46750 * 179.97438 * 5 4 3 7 7 S 1.81001 * 109.46937 * 179.97438 * 6 5 4 8 8 C 1.76199 * 99.99829 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00188 * 359.97438 * 8 7 6 10 10 C 1.38806 * 119.99677 * 180.02562 * 8 7 6 11 11 N 1.31629 * 119.99486 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00086 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47116 * 90.00674 * 12 10 8 14 14 H 1.48503 * 109.47095 * 210.00309 * 12 10 8 15 15 H 1.48494 * 109.47479 * 330.00173 * 12 10 8 16 16 C 1.46903 * 110.99465 * 124.13766 * 3 2 1 17 17 C 1.52996 * 109.47125 * 296.47124 * 16 3 2 18 18 C 1.53181 * 109.54448 * 174.95181 * 17 16 3 19 19 C 1.53089 * 109.16622 * 176.84925 * 18 17 16 20 20 O 1.42902 * 109.41393 * 302.39461 * 19 18 17 21 21 C 1.42910 * 114.09750 * 61.15632 * 20 19 18 22 22 C 1.53085 * 109.41521 * 298.83860 * 21 20 19 23 23 H 1.09001 * 109.47110 * 294.86113 * 1 2 3 24 24 H 1.09006 * 109.46641 * 54.86080 * 1 2 3 25 25 H 1.08997 * 109.47159 * 174.86083 * 1 2 3 26 26 H 1.08996 * 109.46805 * 186.04559 * 4 3 2 27 27 H 1.08995 * 109.47658 * 306.05394 * 4 3 2 28 28 H 1.08996 * 109.46655 * 299.98942 * 5 4 3 29 29 H 1.08995 * 109.47425 * 59.99542 * 5 4 3 30 30 H 1.09002 * 109.47036 * 299.99748 * 6 5 4 31 31 H 1.09000 * 109.46978 * 59.99977 * 6 5 4 32 32 H 0.97003 * 119.99630 * 179.97438 * 11 10 8 33 33 H 1.09005 * 109.46954 * 176.47294 * 16 3 2 34 34 H 1.09002 * 109.47471 * 56.47936 * 16 3 2 35 35 H 1.09005 * 109.61059 * 54.73747 * 17 16 3 36 36 H 1.09006 * 109.52164 * 296.75876 * 18 17 16 37 37 H 1.09004 * 109.52013 * 56.94463 * 18 17 16 38 38 H 1.08999 * 109.47978 * 182.41005 * 19 18 17 39 39 H 1.09004 * 109.47509 * 62.37693 * 19 18 17 40 40 H 1.08998 * 109.47889 * 178.85309 * 21 20 19 41 41 H 1.09003 * 109.49006 * 58.83074 * 21 20 19 42 42 H 1.08998 * 109.52354 * 297.70594 * 22 21 20 43 43 H 1.08996 * 109.52295 * 177.51321 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.7058 1.6092 -1.2723 5 6 1.6743 1.6701 -2.4007 6 6 2.3842 1.9548 -3.7258 7 16 1.1640 2.0261 -5.0608 8 6 2.2254 2.3556 -6.4281 9 1 3.2902 2.4504 -6.2746 10 6 1.6928 2.4944 -7.7024 11 7 2.4857 2.7411 -8.7237 12 14 -0.1489 2.3311 -7.9678 13 1 -0.7897 3.6631 -7.8247 14 1 -0.4076 1.8013 -9.3308 15 1 -0.7138 1.3991 -6.9591 16 6 2.9413 1.5043 1.1352 17 6 2.1573 1.3963 2.4446 18 6 3.1280 1.4449 3.6286 19 6 2.3297 1.4155 4.9345 20 8 1.4162 2.5142 4.9577 21 6 0.4544 2.4957 3.9008 22 6 1.1773 2.5685 2.5534 23 1 -0.3633 0.4321 0.9324 24 1 -0.3633 0.5915 -0.8404 25 1 -0.3633 -1.0235 -0.0921 26 1 3.2293 2.5630 -1.2069 27 1 3.4229 0.8145 -1.4780 28 1 1.1508 0.7163 -2.4662 29 1 0.9572 2.4648 -2.1950 30 1 2.9075 2.9087 -3.6601 31 1 3.1015 1.1603 -3.9317 32 1 2.1136 2.8377 -9.6143 33 1 3.4170 2.4833 1.0763 34 1 3.7047 0.7270 1.1035 35 1 1.6053 0.4565 2.4640 36 1 3.7940 0.5828 3.5892 37 1 3.7148 2.3622 3.5810 38 1 3.0131 1.4930 5.7801 39 1 1.7746 0.4797 5.0001 40 1 -0.2132 3.3513 4.0020 41 1 -0.1255 1.5741 3.9529 42 1 1.7248 3.5085 2.4842 43 1 0.4483 2.5101 1.7453 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801603494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:06 Heat of formation + Delta-G solvation = -89.937452 kcal Electronic energy + Delta-G solvation = -21108.823638 eV Core-core repulsion = 17894.523126 eV Total energy + Delta-G solvation = -3214.300511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41579 -38.66006 -35.79547 -35.50702 -34.69221 -32.71962 -31.96892 -28.49533 -27.91396 -27.25036 -25.28373 -24.40838 -22.85618 -22.39573 -20.91925 -19.62443 -17.89365 -17.27260 -17.10436 -16.88446 -16.78932 -16.44101 -16.01433 -15.69202 -15.65013 -15.36044 -14.94397 -14.67198 -14.36071 -14.13959 -13.92164 -13.52175 -13.43605 -13.23354 -13.07953 -13.01025 -12.86809 -12.33339 -12.21205 -12.09949 -11.83246 -11.81243 -11.69607 -11.42582 -11.16970 -11.14442 -10.86924 -10.58143 -10.43026 -9.70172 -8.99954 -8.52711 -6.23968 1.11340 1.31647 1.47124 1.60841 1.78566 2.24308 2.67779 2.85357 3.00769 3.40842 3.79197 3.90466 3.95993 3.98437 4.12988 4.20190 4.31727 4.38282 4.43791 4.46583 4.51224 4.59324 4.64712 4.69913 4.70459 4.74496 4.77875 4.83197 4.87112 4.89622 4.94880 5.01222 5.13060 5.18025 5.22471 5.29528 5.44901 5.68952 5.74751 6.04250 6.09366 6.30258 6.91368 8.60442 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036905 B = 0.002708 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.521809 B =10336.457886 C =10543.693825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.281 6.281 3 N -0.361 5.361 4 C 0.050 3.950 5 C -0.079 4.079 6 C -0.069 4.069 7 S -0.219 6.219 8 C -0.522 4.522 9 H 0.050 0.950 10 C 0.037 3.963 11 N -0.923 5.923 12 Si 0.926 3.074 13 H -0.260 1.260 14 H -0.263 1.263 15 H -0.229 1.229 16 C 0.048 3.952 17 C -0.077 4.077 18 C -0.147 4.147 19 C 0.058 3.942 20 O -0.405 6.405 21 C 0.058 3.942 22 C -0.139 4.139 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.277 0.723 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.013 -3.528 27.936 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 N -0.130 5.130 4 C -0.080 4.080 5 C -0.118 4.118 6 C -0.218 4.218 7 S 0.009 5.991 8 C -0.670 4.670 9 H 0.069 0.931 10 C -0.168 4.168 11 N -0.561 5.561 12 Si 0.747 3.253 13 H -0.185 1.185 14 H -0.188 1.188 15 H -0.153 1.153 16 C -0.080 4.080 17 C -0.096 4.096 18 C -0.185 4.185 19 C -0.018 4.018 20 O -0.325 6.325 21 C -0.018 4.018 22 C -0.177 4.177 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.118 0.882 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.387 -3.356 27.950 28.490 hybrid contribution 1.671 -0.442 -1.350 2.193 sum -2.716 -3.798 26.600 27.006 Atomic orbital electron populations 1.22752 0.79945 1.02461 1.00683 1.90653 1.21742 1.19309 1.96875 1.67656 1.34241 1.07930 1.03175 1.22413 0.95377 1.01906 0.88297 1.21110 0.97880 1.02575 0.90239 1.23065 0.99571 1.03472 0.95733 1.83842 1.17477 1.94425 1.03326 1.22345 0.94758 1.55848 0.94040 0.93134 1.25797 1.03706 0.92834 0.94463 1.70041 1.37829 1.47731 1.00478 0.85700 0.79020 0.80790 0.79758 1.18483 1.18782 1.15261 1.22534 0.93609 1.02193 0.89620 1.21059 0.96497 0.99092 0.92951 1.22195 0.98375 1.03514 0.94394 1.22681 0.91830 0.89248 0.98045 1.87901 1.45912 1.48253 1.50385 1.22686 0.90573 1.02426 0.86142 1.22111 0.99347 0.98391 0.97815 0.93095 0.94074 0.88445 0.87558 0.93765 0.91856 0.90650 0.91101 0.91972 0.91392 0.87894 0.93573 0.91401 0.89944 0.90855 0.87657 0.92854 0.88213 0.92919 0.91555 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 11.20 113.37 1.27 2.03 16 2 O -0.28 -6.82 9.75 -50.15 -0.49 -7.31 16 3 N -0.36 -7.89 4.26 -513.87 -2.19 -10.08 16 4 C 0.05 1.20 5.28 86.30 0.46 1.65 16 5 C -0.08 -2.35 4.90 30.60 0.15 -2.20 16 6 C -0.07 -2.64 5.67 71.98 0.41 -2.23 16 7 S -0.22 -10.56 19.41 -56.49 -1.10 -11.66 16 8 C -0.52 -30.98 10.04 67.96 0.68 -30.30 16 9 H 0.05 3.26 8.03 -2.91 -0.02 3.23 16 10 C 0.04 2.16 5.50 84.86 0.47 2.63 16 11 N -0.92 -57.09 13.97 21.65 0.30 -56.79 16 12 Si 0.93 44.26 27.74 68.60 1.90 46.17 16 13 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 14 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.23 -10.55 6.74 99.48 0.67 -9.88 16 16 C 0.05 0.84 4.67 86.30 0.40 1.24 16 17 C -0.08 -1.19 2.31 -10.67 -0.02 -1.21 16 18 C -0.15 -1.86 5.42 30.68 0.17 -1.69 16 19 C 0.06 0.76 6.84 72.01 0.49 1.26 16 20 O -0.41 -7.20 10.77 -148.98 -1.60 -8.80 16 21 C 0.06 0.86 6.84 72.01 0.49 1.35 16 22 C -0.14 -2.16 5.27 30.68 0.16 -2.00 16 23 H 0.05 0.86 8.05 -2.39 -0.02 0.84 16 24 H 0.04 0.89 7.25 -2.38 -0.02 0.87 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.11 2.22 7.97 -2.39 -0.02 2.20 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.98 7.09 -2.39 -0.02 1.97 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.06 2.42 8.14 -2.40 -0.02 2.40 16 32 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 33 H 0.10 1.56 7.98 -2.38 -0.02 1.54 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.19 7.61 -2.38 -0.02 1.17 16 36 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.30 7.77 -2.39 -0.02 1.28 16 Total: -1.00 -67.90 356.71 2.86 -65.04 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.91 Total: 12.90 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 5.12 Total: -29.46 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -1.89 Total: -66.87 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -2.09 Total: -16.11 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.17 kcal Atomic # 16 Polarization: -10.56 SS G_CDS: -1.10 Total: -11.66 kcal Total: -67.90 2.86 -65.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801603494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.896 kcal (2) G-P(sol) polarization free energy of solvation -67.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds