Wall clock time and date at job start Tue Mar 31 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00299 * 2 1 4 4 H 1.08999 * 110.72792 * 29.29534 * 3 2 1 5 5 C 1.54342 * 110.81874 * 265.89845 * 3 2 1 6 6 C 1.51701 * 105.02397 * 215.53624 * 5 3 2 7 7 C 1.38566 * 130.22439 * 197.09448 * 6 5 3 8 8 C 1.37972 * 120.31235 * 179.80667 * 7 6 5 9 9 C 1.38887 * 119.86283 * 0.02562 * 8 7 6 10 10 N 1.39922 * 120.11284 * 180.02562 * 9 8 7 11 11 C 1.34770 * 120.00535 * 213.28565 * 10 9 8 12 12 O 1.21296 * 119.99954 * 5.26815 * 11 10 9 13 13 C 1.50699 * 120.00203 * 185.27423 * 11 10 9 14 14 C 1.53006 * 109.47202 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47202 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99980 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00029 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00017 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47105 * 89.99919 * 19 17 15 21 21 H 1.48498 * 109.47069 * 209.99684 * 19 17 15 22 22 H 1.48500 * 109.46965 * 329.99847 * 19 17 15 23 23 C 1.38743 * 119.78381 * 359.97438 * 9 8 7 24 24 C 1.38277 * 109.81519 * 16.93718 * 6 5 3 25 25 C 1.51382 * 109.75497 * 0.15798 * 24 6 5 26 26 H 1.09001 * 109.47063 * 300.00242 * 1 2 3 27 27 H 1.08995 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46919 * 59.99899 * 1 2 3 29 29 H 1.08995 * 110.30098 * 334.31699 * 5 3 2 30 30 H 1.09000 * 110.30331 * 96.47376 * 5 3 2 31 31 H 1.08002 * 119.84675 * 359.83053 * 7 6 5 32 32 H 1.08003 * 120.07245 * 179.97438 * 8 7 6 33 33 H 0.97001 * 119.99746 * 33.28156 * 10 9 8 34 34 H 1.09000 * 109.47192 * 299.99401 * 13 11 10 35 35 H 1.09002 * 109.47279 * 59.99933 * 13 11 10 36 36 H 1.09000 * 109.46735 * 299.99898 * 14 13 11 37 37 H 1.08997 * 109.47242 * 59.99256 * 14 13 11 38 38 H 0.97000 * 119.99391 * 180.02562 * 18 17 15 39 39 H 1.07995 * 119.91707 * 180.02562 * 23 9 8 40 40 H 1.09005 * 110.30170 * 223.88268 * 25 24 6 41 41 H 1.08989 * 110.38657 * 101.76723 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3550 2.0195 0.4988 5 6 2.3277 1.7646 -1.4390 6 6 3.6102 2.5664 -1.3220 7 6 4.1864 3.4663 -2.2041 8 6 5.3738 4.0919 -1.8841 9 6 5.9950 3.8182 -0.6724 10 7 7.1990 4.4500 -0.3424 11 6 8.1226 3.7989 0.3920 12 8 7.9529 2.6344 0.6859 13 6 9.3662 4.5176 0.8482 14 6 10.2410 3.5590 1.6587 15 6 11.4848 4.2775 2.1143 16 1 11.6365 5.3140 1.8517 17 6 12.4297 3.6112 2.8655 18 7 12.2453 2.3488 3.1848 19 14 13.9719 4.5017 3.4297 20 1 13.7247 5.1302 4.7523 21 1 15.0900 3.5311 3.5441 22 1 14.3268 5.5515 2.4412 23 6 5.4172 2.9170 0.2102 24 6 4.2262 2.2919 -0.1149 25 6 3.4046 1.2850 0.6616 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 2.4803 0.9011 -2.0864 30 1 1.5211 2.3888 -1.8234 31 1 3.7037 3.6793 -3.1465 32 1 5.8198 4.7923 -2.5748 33 1 7.3690 5.3567 -0.6422 34 1 9.9216 4.8700 -0.0209 35 1 9.0869 5.3679 1.4703 36 1 9.6853 3.2069 2.5278 37 1 10.5202 2.7083 1.0370 38 1 12.9099 1.8803 3.7137 39 1 5.8982 2.7029 1.1531 40 1 3.3312 1.5829 1.7076 41 1 3.8466 0.2920 0.5818 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812544248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:31 Heat of formation + Delta-G solvation = -67.395845 kcal Electronic energy + Delta-G solvation = -21826.861118 eV Core-core repulsion = 18478.094133 eV Total energy + Delta-G solvation = -3348.766985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.61973 -39.39396 -37.85373 -35.47794 -33.52018 -33.24222 -31.39618 -30.74716 -28.49422 -27.26697 -26.58335 -25.52928 -23.02117 -21.89911 -21.01483 -20.63383 -19.70244 -17.29856 -17.09341 -16.80667 -16.16709 -15.79615 -15.60717 -15.05642 -14.73024 -14.50769 -14.45789 -13.88353 -13.77485 -13.25758 -13.18406 -12.97322 -12.65320 -12.31533 -12.20164 -11.94643 -11.77583 -11.59788 -11.25153 -11.20222 -10.95847 -10.92404 -10.62604 -10.01477 -9.92652 -9.89087 -9.71809 -9.25870 -9.09477 -8.67905 -8.35196 -7.85950 -5.98706 -4.03486 1.28740 1.42817 3.05200 3.30884 3.32028 3.38439 3.40726 3.44719 3.81231 4.25054 4.43993 4.45691 4.77615 4.88185 4.96779 5.01706 5.07168 5.14586 5.29041 5.35644 5.36379 5.43559 5.45103 5.55599 5.60384 5.74204 5.77644 5.90003 6.08234 6.13361 6.15600 6.26993 6.42929 6.57937 6.66183 6.81750 6.92029 7.13015 7.67963 7.71197 7.80642 8.02984 8.33711 8.58965 9.04520 9.60323 11.12219 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029804 B = 0.002708 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.238940 B =10336.657400 C =11128.003234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.088 3.912 4 H 0.075 0.925 5 C -0.097 4.097 6 C -0.123 4.123 7 C -0.086 4.086 8 C -0.152 4.152 9 C 0.162 3.838 10 N -0.686 5.686 11 C 0.508 3.492 12 O -0.511 6.511 13 C -0.129 4.129 14 C 0.036 3.964 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.109 4.109 24 C -0.074 4.074 25 C -0.078 4.078 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.409 0.591 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.464 2.696 -10.065 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.030 3.970 4 H 0.093 0.907 5 C -0.134 4.134 6 C -0.124 4.124 7 C -0.105 4.105 8 C -0.173 4.173 9 C 0.067 3.933 10 N -0.332 5.332 11 C 0.298 3.702 12 O -0.384 6.384 13 C -0.169 4.169 14 C -0.001 4.001 15 C -0.567 4.567 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.129 4.129 24 C -0.075 4.075 25 C -0.115 4.115 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.244 0.756 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.154 0.846 40 H 0.100 0.900 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.301 1.536 -9.693 25.283 hybrid contribution 0.833 1.160 0.071 1.430 sum -22.468 2.696 -9.621 24.590 Atomic orbital electron populations 1.22797 0.81039 1.02820 0.99997 1.87944 1.19677 1.27189 1.94860 1.22768 0.94569 0.84557 0.95114 0.90674 1.21514 0.94728 0.99232 0.97947 1.20347 0.97524 0.98928 0.95634 1.20291 0.95204 0.96204 0.98800 1.20763 0.97481 1.03799 0.95237 1.17652 0.86668 0.95899 0.93045 1.43950 1.15769 1.18268 1.55260 1.21853 0.84673 0.87478 0.76227 1.90698 1.77478 1.16529 1.53714 1.21915 0.92209 1.01029 1.01727 1.18920 0.92818 0.93555 0.94826 1.21195 1.04301 0.97549 1.33630 0.92540 1.25031 0.98391 0.94856 0.96117 1.69998 1.35388 1.09389 1.37972 0.86575 0.82820 0.79408 0.79050 1.20647 1.21199 1.19879 1.20617 0.94089 0.97783 1.00412 1.20171 0.94622 0.96950 0.95708 1.21019 0.92406 0.99142 0.98974 0.93928 0.89573 0.94018 0.89432 0.90910 0.86124 0.85591 0.75553 0.89882 0.89763 0.95726 0.95712 0.92892 0.84576 0.89995 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.87 101.05 1.10 1.30 16 2 O -0.38 -3.92 10.43 -35.23 -0.37 -4.28 16 3 C 0.09 0.87 3.54 -25.33 -0.09 0.78 16 4 H 0.08 0.63 7.85 -51.93 -0.41 0.22 16 5 C -0.10 -0.94 6.55 -26.69 -0.17 -1.11 16 6 C -0.12 -1.48 6.15 -103.99 -0.64 -2.12 16 7 C -0.09 -0.97 10.03 -39.56 -0.40 -1.36 16 8 C -0.15 -1.82 9.96 -39.44 -0.39 -2.22 16 9 C 0.16 2.39 6.28 -83.74 -0.53 1.86 16 10 N -0.69 -9.94 5.34 -9.89 -0.05 -10.00 16 11 C 0.51 9.63 7.57 -10.99 -0.08 9.55 16 12 O -0.51 -11.82 13.67 5.54 0.08 -11.74 16 13 C -0.13 -2.54 5.64 -27.88 -0.16 -2.69 16 14 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 15 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.31 13.29 55.43 0.74 -26.58 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.11 -1.73 8.66 -39.34 -0.34 -2.07 16 24 C -0.07 -1.01 6.13 -104.22 -0.64 -1.65 16 25 C -0.08 -0.93 6.52 -26.85 -0.18 -1.10 16 26 H 0.04 0.25 8.11 -51.93 -0.42 -0.17 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.41 4.37 8.82 -40.82 -0.36 4.01 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.14 2.46 6.41 -52.49 -0.34 2.12 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.20 8.10 -51.94 -0.42 0.78 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -34.30 344.91 -8.61 -42.91 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.13 Total: 1.52 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -3.05 Total: -13.56 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.68 Total: -36.57 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.29 Total: -16.03 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.30 -8.61 -42.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812544248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.486 kcal (2) G-P(sol) polarization free energy of solvation -34.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds