Wall clock time and date at job start Tue Mar 31 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00299 * 2 1 4 4 H 1.08999 * 110.72792 * 29.29534 * 3 2 1 5 5 C 1.54342 * 110.81874 * 265.89845 * 3 2 1 6 6 C 1.51701 * 105.02397 * 215.53624 * 5 3 2 7 7 C 1.38566 * 130.22439 * 197.09448 * 6 5 3 8 8 C 1.37972 * 120.31235 * 179.80667 * 7 6 5 9 9 C 1.38887 * 119.86283 * 0.02562 * 8 7 6 10 10 N 1.39922 * 120.11284 * 180.02562 * 9 8 7 11 11 C 1.34770 * 120.00535 * 213.28565 * 10 9 8 12 12 O 1.21296 * 119.99954 * 5.26815 * 11 10 9 13 13 C 1.50699 * 120.00203 * 185.27423 * 11 10 9 14 14 C 1.53006 * 109.47202 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47202 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99980 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00029 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00017 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47105 * 89.99919 * 19 17 15 21 21 H 1.48498 * 109.47069 * 209.99684 * 19 17 15 22 22 H 1.48500 * 109.46965 * 329.99847 * 19 17 15 23 23 C 1.38743 * 119.78381 * 359.97438 * 9 8 7 24 24 C 1.38277 * 109.81519 * 16.93718 * 6 5 3 25 25 C 1.51382 * 109.75497 * 0.15798 * 24 6 5 26 26 H 1.09001 * 109.47063 * 300.00242 * 1 2 3 27 27 H 1.08995 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46919 * 59.99899 * 1 2 3 29 29 H 1.08995 * 110.30098 * 334.31699 * 5 3 2 30 30 H 1.09000 * 110.30331 * 96.47376 * 5 3 2 31 31 H 1.08002 * 119.84675 * 359.83053 * 7 6 5 32 32 H 1.08003 * 120.07245 * 179.97438 * 8 7 6 33 33 H 0.97001 * 119.99746 * 33.28156 * 10 9 8 34 34 H 1.09000 * 109.47192 * 299.99401 * 13 11 10 35 35 H 1.09002 * 109.47279 * 59.99933 * 13 11 10 36 36 H 1.09000 * 109.46735 * 299.99898 * 14 13 11 37 37 H 1.08997 * 109.47242 * 59.99256 * 14 13 11 38 38 H 0.97000 * 119.99391 * 180.02562 * 18 17 15 39 39 H 1.07995 * 119.91707 * 180.02562 * 23 9 8 40 40 H 1.09005 * 110.30170 * 223.88268 * 25 24 6 41 41 H 1.08989 * 110.38657 * 101.76723 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3550 2.0195 0.4988 5 6 2.3277 1.7646 -1.4390 6 6 3.6102 2.5664 -1.3220 7 6 4.1864 3.4663 -2.2041 8 6 5.3738 4.0919 -1.8841 9 6 5.9950 3.8182 -0.6724 10 7 7.1990 4.4500 -0.3424 11 6 8.1226 3.7989 0.3920 12 8 7.9529 2.6344 0.6859 13 6 9.3662 4.5176 0.8482 14 6 10.2410 3.5590 1.6587 15 6 11.4848 4.2775 2.1143 16 1 11.6365 5.3140 1.8517 17 6 12.4297 3.6112 2.8655 18 7 12.2453 2.3488 3.1848 19 14 13.9719 4.5017 3.4297 20 1 13.7247 5.1302 4.7523 21 1 15.0900 3.5311 3.5441 22 1 14.3268 5.5515 2.4412 23 6 5.4172 2.9170 0.2102 24 6 4.2262 2.2919 -0.1149 25 6 3.4046 1.2850 0.6616 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 2.4803 0.9011 -2.0864 30 1 1.5211 2.3888 -1.8234 31 1 3.7037 3.6793 -3.1465 32 1 5.8198 4.7923 -2.5748 33 1 7.3690 5.3567 -0.6422 34 1 9.9216 4.8700 -0.0209 35 1 9.0869 5.3679 1.4703 36 1 9.6853 3.2069 2.5278 37 1 10.5202 2.7083 1.0370 38 1 12.9099 1.8803 3.7137 39 1 5.8982 2.7029 1.1531 40 1 3.3312 1.5829 1.7076 41 1 3.8466 0.2920 0.5818 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812544248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:31 Heat of formation + Delta-G solvation = -89.913745 kcal Electronic energy + Delta-G solvation = -21827.837567 eV Core-core repulsion = 18478.094133 eV Total energy + Delta-G solvation = -3349.743435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.74737 -40.58521 -38.77183 -36.61571 -35.58896 -34.35673 -33.07384 -32.02695 -29.45421 -28.44143 -27.42887 -27.05318 -24.38825 -23.33664 -21.87483 -21.84369 -21.17865 -18.89422 -18.22880 -17.81173 -17.63941 -16.98219 -16.64412 -16.47511 -16.37112 -15.53069 -15.40241 -15.12257 -14.86236 -14.58500 -14.29588 -14.15562 -14.02471 -13.83526 -13.35814 -13.27774 -12.83625 -12.70507 -12.58276 -12.48357 -12.43437 -12.14134 -11.94983 -11.84967 -11.66482 -11.32261 -11.08886 -10.73631 -10.58268 -10.57749 -9.72601 -8.95051 -8.19453 -6.33693 0.23704 0.40286 1.41699 1.44509 1.55442 1.61783 2.08129 2.42913 2.71237 2.79153 3.13847 3.38463 3.58837 3.89241 4.02970 4.06398 4.08928 4.28848 4.38843 4.46272 4.51274 4.53101 4.56196 4.62455 4.64400 4.73443 4.83715 4.87724 4.91050 4.97720 5.03266 5.13585 5.28756 5.37461 5.46838 5.53364 5.59798 5.64898 5.83158 6.05797 6.15199 6.26426 6.47421 6.84781 7.20463 7.36790 8.93325 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029804 B = 0.002708 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.238940 B =10336.657400 C =11128.003234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.403 6.403 3 C 0.094 3.906 4 H 0.094 0.906 5 C -0.091 4.091 6 C -0.119 4.119 7 C -0.082 4.082 8 C -0.140 4.140 9 C 0.135 3.865 10 N -0.662 5.662 11 C 0.510 3.490 12 O -0.566 6.566 13 C -0.116 4.116 14 C 0.041 3.959 15 C -0.542 4.542 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.939 5.939 19 Si 0.975 3.025 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.254 1.254 23 C -0.138 4.138 24 C -0.093 4.093 25 C -0.085 4.085 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.430 0.570 34 H 0.112 0.888 35 H 0.110 0.890 36 H -0.018 1.018 37 H -0.018 1.018 38 H 0.263 0.737 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.822 5.434 -12.324 28.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.036 3.964 4 H 0.112 0.888 5 C -0.128 4.128 6 C -0.120 4.120 7 C -0.100 4.100 8 C -0.160 4.160 9 C 0.040 3.960 10 N -0.309 5.309 11 C 0.300 3.700 12 O -0.443 6.443 13 C -0.156 4.156 14 C 0.003 3.997 15 C -0.580 4.580 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.799 3.201 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.178 1.178 23 C -0.158 4.158 24 C -0.094 4.094 25 C -0.122 4.122 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.177 0.823 32 H 0.177 0.823 33 H 0.269 0.731 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.000 1.000 37 H 0.001 0.999 38 H 0.071 0.929 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.701 4.337 -11.991 27.798 hybrid contribution 1.125 0.248 0.746 1.373 sum -23.576 4.584 -11.244 26.519 Atomic orbital electron populations 1.23016 0.79132 1.03933 1.01224 1.87913 1.21816 1.27448 1.95007 1.22727 0.93363 0.84981 0.95288 0.88801 1.21541 0.94341 0.99230 0.97696 1.20761 0.98076 0.98580 0.94604 1.20764 0.94626 0.94843 0.99804 1.21119 0.97275 1.03556 0.94064 1.17866 0.86867 0.96811 0.94414 1.43514 1.14882 1.18843 1.53705 1.21649 0.85190 0.86738 0.76432 1.90692 1.78620 1.18893 1.56116 1.21669 0.91876 0.99782 1.02236 1.18704 0.93645 0.93790 0.93527 1.21711 1.04553 0.98537 1.33221 0.90337 1.26166 1.02585 0.95607 0.96245 1.70186 1.36939 1.11626 1.39120 0.85301 0.77574 0.78216 0.79030 1.19713 1.21286 1.17752 1.20546 0.95535 0.99844 0.99917 1.20361 0.94334 0.97418 0.97249 1.21080 0.93967 0.97768 0.99354 0.92980 0.88661 0.92448 0.89519 0.87842 0.82255 0.82266 0.73079 0.87029 0.87152 0.99952 0.99929 0.92868 0.88371 0.90062 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.87 113.37 1.23 1.49 16 2 O -0.40 -7.93 10.43 -148.98 -1.55 -9.49 16 3 C 0.09 1.74 3.54 31.50 0.11 1.85 16 4 H 0.09 1.37 7.85 -2.39 -0.02 1.35 16 5 C -0.09 -1.52 6.55 30.62 0.20 -1.32 16 6 C -0.12 -2.64 6.15 -19.46 -0.12 -2.76 16 7 C -0.08 -1.55 10.03 22.28 0.22 -1.32 16 8 C -0.14 -2.96 9.96 22.36 0.22 -2.73 16 9 C 0.13 3.92 6.28 38.13 0.24 4.16 16 10 N -0.66 -18.83 5.34 -303.59 -1.62 -20.45 16 11 C 0.51 20.01 7.57 87.66 0.66 20.67 16 12 O -0.57 -28.29 13.67 -3.08 -0.04 -28.33 16 13 C -0.12 -4.58 5.64 29.85 0.17 -4.41 16 14 C 0.04 2.29 4.26 29.85 0.13 2.41 16 15 C -0.54 -30.79 9.11 25.60 0.23 -30.55 16 16 H 0.08 4.02 7.74 -2.91 -0.02 3.99 16 17 C -0.01 -0.51 5.46 84.65 0.46 -0.04 16 18 N -0.94 -60.06 13.29 21.45 0.28 -59.77 16 19 Si 0.98 44.37 29.54 68.60 2.03 46.40 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.25 -10.65 7.11 99.48 0.71 -9.95 16 23 C -0.14 -4.67 8.66 22.43 0.19 -4.47 16 24 C -0.09 -2.62 6.13 -19.60 -0.12 -2.74 16 25 C -0.08 -2.10 6.52 30.52 0.20 -1.90 16 26 H 0.05 0.50 8.11 -2.39 -0.02 0.48 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.09 1.52 8.10 -2.39 -0.02 1.50 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.43 8.20 8.82 -92.71 -0.82 7.38 16 34 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 35 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 36 H -0.02 -1.14 8.10 -2.39 -0.02 -1.15 16 37 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 38 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 39 H 0.10 4.00 6.41 -2.91 -0.02 3.99 16 40 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.08 2.13 8.10 -2.39 -0.02 2.11 16 Total: -1.00 -80.72 344.91 3.34 -77.37 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.21 Total: 15.94 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.04 Total: -21.66 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -1.34 Total: -80.23 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.60 Total: -37.82 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -80.72 3.34 -77.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812544248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.541 kcal (2) G-P(sol) polarization free energy of solvation -80.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds