Wall clock time and date at job start Tue Mar 31 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34710 * 116.99774 * 2 1 4 4 O 1.21465 * 120.00202 * 0.02562 * 3 2 1 5 5 C 1.47725 * 119.99768 * 180.02562 * 3 2 1 6 6 C 1.39655 * 120.24666 * 0.02562 * 5 3 2 7 7 C 1.37705 * 119.70982 * 180.09334 * 6 5 3 8 8 C 1.38903 * 120.59506 * 0.02562 * 7 6 5 9 9 C 1.38021 * 119.95138 * 359.78004 * 8 7 6 10 10 C 1.38394 * 119.99840 * 0.30989 * 9 8 7 11 11 C 1.50745 * 121.64130 * 180.54336 * 9 8 7 12 12 C 1.52886 * 109.96620 * 342.81608 * 11 9 8 13 13 N 1.47153 * 108.49889 * 50.48865 * 12 11 9 14 14 C 1.46901 * 111.00012 * 165.28961 * 13 12 11 15 15 C 1.52999 * 109.46955 * 190.00260 * 14 13 12 16 16 C 1.50697 * 109.47197 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99897 * 0.02562 * 16 15 14 18 18 C 1.37885 * 120.00210 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99774 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99687 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47670 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47008 * 120.00304 * 20 18 16 23 23 H 1.48501 * 109.46867 * 239.99711 * 20 18 16 24 24 C 1.46615 * 110.27319 * 288.72168 * 13 12 11 25 25 H 1.09001 * 109.47477 * 59.99112 * 1 2 3 26 26 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47197 * 299.99657 * 1 2 3 28 28 H 1.07999 * 120.14443 * 0.37330 * 6 5 3 29 29 H 1.07996 * 119.69983 * 180.02562 * 7 6 5 30 30 H 1.08001 * 119.88076 * 179.82621 * 10 9 8 31 31 H 1.09001 * 109.38613 * 102.96591 * 11 9 8 32 32 H 1.09001 * 109.39193 * 222.65845 * 11 9 8 33 33 H 1.09000 * 109.63232 * 170.19376 * 12 11 9 34 34 H 1.08999 * 109.62637 * 290.58479 * 12 11 9 35 35 H 1.09007 * 109.46758 * 309.99411 * 14 13 12 36 36 H 1.08991 * 109.47251 * 69.99830 * 14 13 12 37 37 H 1.09005 * 109.47104 * 299.99525 * 15 14 13 38 38 H 1.09003 * 109.47433 * 59.99303 * 15 14 13 39 39 H 0.96997 * 120.00071 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.26429 * 292.34714 * 24 13 12 41 41 H 1.08999 * 109.26737 * 172.87685 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3044 0.1096 -0.0017 7 6 5.6788 0.1946 -0.0002 8 6 6.3107 1.4316 0.0028 9 6 5.5592 2.5893 -0.0002 10 6 4.1771 2.5170 0.0003 11 6 6.2050 3.9513 -0.0092 12 6 7.6707 3.8369 0.4106 13 7 8.3064 2.7830 -0.3959 14 6 9.7703 2.8556 -0.2974 15 6 10.3981 1.9184 -1.3310 16 6 11.8999 1.9934 -1.2304 17 1 12.3605 2.6441 -0.5018 18 6 12.6859 1.2304 -2.0678 19 7 12.1250 0.4377 -2.9547 20 14 14.5474 1.3229 -1.9425 21 1 14.9246 2.2814 -0.8729 22 1 15.0889 -0.0208 -1.6159 23 1 15.1085 1.7809 -3.2389 24 6 7.8170 1.4636 0.0156 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.8207 -0.8559 -0.0082 29 1 6.2708 -0.7087 -0.0015 30 1 3.5909 3.4241 0.0008 31 1 6.1480 4.3721 -1.0131 32 1 5.6794 4.6057 0.6862 33 1 8.1766 4.7866 0.2367 34 1 7.7296 3.5789 1.4680 35 1 10.0970 3.8779 -0.4882 36 1 10.0826 2.5551 0.7027 37 1 10.0715 0.8961 -1.1402 38 1 10.0858 2.2189 -2.3311 39 1 12.6779 -0.0988 -3.5440 40 1 8.1729 1.2461 1.0227 41 1 8.1987 0.7081 -0.6712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880349420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:39 Heat of formation + Delta-G solvation = -65.868615 kcal Electronic energy + Delta-G solvation = -22106.003542 eV Core-core repulsion = 18757.302783 eV Total energy + Delta-G solvation = -3348.700760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.78523 -39.75121 -37.19538 -36.52714 -33.73634 -32.66139 -31.95375 -29.84828 -28.84258 -28.02323 -25.78981 -23.96846 -23.37975 -22.49772 -21.53566 -20.27508 -19.45430 -17.74807 -17.22211 -16.54989 -16.48685 -15.88871 -15.50089 -14.89791 -14.56628 -14.50566 -14.18659 -13.85147 -13.68678 -13.52339 -13.27256 -12.90598 -12.57248 -12.41423 -12.26990 -11.95075 -11.86219 -11.39376 -11.19768 -11.08406 -11.05233 -10.95761 -10.74586 -10.55671 -10.44864 -9.92720 -9.41022 -9.14573 -8.94289 -8.66443 -8.36064 -7.84131 -6.02421 -4.04991 0.61812 1.30253 2.40965 2.47807 3.29432 3.37167 3.40710 3.67711 4.26315 4.47975 4.52734 4.65820 4.79242 4.82756 4.88652 4.90436 5.11278 5.20588 5.22797 5.33636 5.39144 5.48175 5.54963 5.68174 5.82463 5.88964 5.90968 6.01075 6.05559 6.13724 6.19102 6.28409 6.31785 6.43163 6.54598 6.81581 6.89887 7.41272 7.44773 7.55053 7.72695 7.84244 8.03835 8.39556 9.02344 9.58986 11.08902 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.002867 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.865735 B = 9764.085721 C =10391.863188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.513 3.487 4 O -0.511 6.511 5 C -0.140 4.140 6 C -0.066 4.066 7 C -0.130 4.130 8 C -0.026 4.026 9 C -0.081 4.081 10 C -0.053 4.053 11 C -0.075 4.075 12 C 0.048 3.952 13 N -0.533 5.533 14 C 0.062 3.938 15 C 0.027 3.973 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.084 3.916 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.065 0.935 36 H 0.022 0.978 37 H 0.016 0.984 38 H 0.026 0.974 39 H 0.260 0.740 40 H 0.051 0.949 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.687 0.254 7.747 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.359 3.641 4 O -0.401 6.401 5 C -0.141 4.141 6 C -0.084 4.084 7 C -0.148 4.148 8 C -0.026 4.026 9 C -0.081 4.081 10 C -0.072 4.072 11 C -0.112 4.112 12 C -0.080 4.080 13 N -0.257 5.257 14 C -0.065 4.065 15 C -0.010 4.010 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.043 4.043 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.034 0.966 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.995 0.500 7.114 21.229 hybrid contribution 0.990 -0.191 0.775 1.272 sum -19.006 0.310 7.889 20.580 Atomic orbital electron populations 1.23272 0.76106 1.03722 1.02597 1.86553 1.23454 1.32793 1.84398 1.21284 0.89227 0.81289 0.72337 1.90815 1.66892 1.36062 1.46324 1.18911 0.88496 0.95177 1.11527 1.21294 0.93670 0.97685 0.95729 1.21114 0.94238 0.97688 1.01785 1.20174 0.96192 0.92514 0.93733 1.19573 0.92192 0.95712 1.00659 1.21158 0.93860 0.96606 0.95549 1.20568 0.95066 0.92704 1.02847 1.22145 0.94165 0.96595 0.95090 1.62414 1.08353 1.01666 1.53250 1.22413 0.83016 1.01707 0.99324 1.19103 0.94317 0.93632 0.93978 1.21216 0.91531 1.24729 1.18639 0.92717 1.24995 0.98664 0.95359 0.95300 1.69977 1.35172 1.26774 1.21211 0.86543 0.85774 0.77793 0.77921 1.19785 1.21043 1.20975 1.21141 0.89116 0.93909 1.00157 0.91831 0.87982 0.91882 0.84609 0.84821 0.84786 0.89531 0.90589 0.90216 0.94873 0.91664 0.95943 0.96558 0.95600 0.93019 0.93149 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.85 9.83 -40.52 -0.40 -4.24 16 3 C 0.51 6.59 7.90 34.61 0.27 6.86 16 4 O -0.51 -7.58 16.14 -19.24 -0.31 -7.89 16 5 C -0.14 -1.79 5.87 -105.05 -0.62 -2.40 16 6 C -0.07 -0.76 9.62 -39.25 -0.38 -1.14 16 7 C -0.13 -1.62 9.62 -39.53 -0.38 -2.00 16 8 C -0.03 -0.36 5.81 -104.47 -0.61 -0.97 16 9 C -0.08 -1.10 5.77 -104.62 -0.60 -1.70 16 10 C -0.05 -0.69 9.20 -39.08 -0.36 -1.05 16 11 C -0.07 -0.92 5.94 -27.92 -0.17 -1.09 16 12 C 0.05 0.68 5.57 -3.74 -0.02 0.66 16 13 N -0.53 -9.29 4.68 -236.19 -1.10 -10.39 16 14 C 0.06 1.25 4.89 -3.82 -0.02 1.23 16 15 C 0.03 0.68 4.91 -27.88 -0.14 0.54 16 16 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 17 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 20 Si 0.89 21.34 29.54 -169.99 -5.02 16.31 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.08 1.36 4.91 -5.14 -0.03 1.33 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.14 1.30 7.62 -52.49 -0.40 0.90 16 29 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.13 1.61 7.64 -52.49 -0.40 1.21 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16 34 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 35 H 0.06 1.29 7.89 -51.92 -0.41 0.88 16 36 H 0.02 0.45 8.06 -51.93 -0.42 0.03 16 37 H 0.02 0.43 6.66 -51.93 -0.35 0.08 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 41 H 0.10 1.84 6.65 -51.93 -0.35 1.49 16 LS Contribution 341.36 15.07 5.14 5.14 Total: -1.00 -31.59 341.36 -9.40 -40.99 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -6.06 Total: -2.63 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.38 Total: -11.60 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.37 Total: -36.08 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.71 Total: -12.14 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.59 -9.40 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880349420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.882 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds