Wall clock time and date at job start Tue Mar 31 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34710 * 116.99774 * 2 1 4 4 O 1.21465 * 120.00202 * 0.02562 * 3 2 1 5 5 C 1.47725 * 119.99768 * 180.02562 * 3 2 1 6 6 C 1.39655 * 120.24666 * 0.02562 * 5 3 2 7 7 C 1.37705 * 119.70982 * 180.09334 * 6 5 3 8 8 C 1.38903 * 120.59506 * 0.02562 * 7 6 5 9 9 C 1.38021 * 119.95138 * 359.78004 * 8 7 6 10 10 C 1.38394 * 119.99840 * 0.30989 * 9 8 7 11 11 C 1.50745 * 121.64130 * 180.54336 * 9 8 7 12 12 C 1.52886 * 109.96620 * 342.81608 * 11 9 8 13 13 N 1.47153 * 108.49889 * 50.48865 * 12 11 9 14 14 C 1.46901 * 111.00012 * 165.28961 * 13 12 11 15 15 C 1.52999 * 109.46955 * 190.00260 * 14 13 12 16 16 C 1.50697 * 109.47197 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99897 * 0.02562 * 16 15 14 18 18 C 1.37885 * 120.00210 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99774 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99687 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47670 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47008 * 120.00304 * 20 18 16 23 23 H 1.48501 * 109.46867 * 239.99711 * 20 18 16 24 24 C 1.46615 * 110.27319 * 288.72168 * 13 12 11 25 25 H 1.09001 * 109.47477 * 59.99112 * 1 2 3 26 26 H 1.08998 * 109.47141 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47197 * 299.99657 * 1 2 3 28 28 H 1.07999 * 120.14443 * 0.37330 * 6 5 3 29 29 H 1.07996 * 119.69983 * 180.02562 * 7 6 5 30 30 H 1.08001 * 119.88076 * 179.82621 * 10 9 8 31 31 H 1.09001 * 109.38613 * 102.96591 * 11 9 8 32 32 H 1.09001 * 109.39193 * 222.65845 * 11 9 8 33 33 H 1.09000 * 109.63232 * 170.19376 * 12 11 9 34 34 H 1.08999 * 109.62637 * 290.58479 * 12 11 9 35 35 H 1.09007 * 109.46758 * 309.99411 * 14 13 12 36 36 H 1.08991 * 109.47251 * 69.99830 * 14 13 12 37 37 H 1.09005 * 109.47104 * 299.99525 * 15 14 13 38 38 H 1.09003 * 109.47433 * 59.99303 * 15 14 13 39 39 H 0.96997 * 120.00071 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.26429 * 292.34714 * 24 13 12 41 41 H 1.08999 * 109.26737 * 172.87685 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3044 0.1096 -0.0017 7 6 5.6788 0.1946 -0.0002 8 6 6.3107 1.4316 0.0028 9 6 5.5592 2.5893 -0.0002 10 6 4.1771 2.5170 0.0003 11 6 6.2050 3.9513 -0.0092 12 6 7.6707 3.8369 0.4106 13 7 8.3064 2.7830 -0.3959 14 6 9.7703 2.8556 -0.2974 15 6 10.3981 1.9184 -1.3310 16 6 11.8999 1.9934 -1.2304 17 1 12.3605 2.6441 -0.5018 18 6 12.6859 1.2304 -2.0678 19 7 12.1250 0.4377 -2.9547 20 14 14.5474 1.3229 -1.9425 21 1 14.9246 2.2814 -0.8729 22 1 15.0889 -0.0208 -1.6159 23 1 15.1085 1.7809 -3.2389 24 6 7.8170 1.4636 0.0156 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.8207 -0.8559 -0.0082 29 1 6.2708 -0.7087 -0.0015 30 1 3.5909 3.4241 0.0008 31 1 6.1480 4.3721 -1.0131 32 1 5.6794 4.6057 0.6862 33 1 8.1766 4.7866 0.2367 34 1 7.7296 3.5789 1.4680 35 1 10.0970 3.8779 -0.4882 36 1 10.0826 2.5551 0.7027 37 1 10.0715 0.8961 -1.1402 38 1 10.0858 2.2189 -2.3311 39 1 12.6779 -0.0988 -3.5440 40 1 8.1729 1.2461 1.0227 41 1 8.1987 0.7081 -0.6712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880349420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:39 Heat of formation + Delta-G solvation = -83.903961 kcal Electronic energy + Delta-G solvation = -22106.785614 eV Core-core repulsion = 18757.302783 eV Total energy + Delta-G solvation = -3349.482831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.75595 -40.80450 -38.40786 -37.49516 -35.47228 -34.09019 -33.17956 -31.35873 -30.05730 -28.88653 -27.18669 -25.56783 -24.48628 -23.57626 -22.72784 -21.83184 -20.54738 -18.79452 -18.45826 -18.13595 -17.41613 -17.08102 -16.73070 -16.53959 -15.90372 -15.61020 -15.30178 -15.14622 -14.87402 -14.47052 -14.34693 -14.27882 -14.05229 -13.73199 -13.27560 -13.12385 -13.09324 -12.88973 -12.83124 -12.48188 -12.40972 -12.15218 -11.84147 -11.82923 -11.80502 -11.53354 -11.27556 -11.15207 -10.53412 -9.97142 -9.68078 -9.20725 -8.18386 -6.29155 -0.39862 0.32633 1.40956 1.41632 1.42190 1.55051 1.64590 2.41470 2.67431 3.00735 3.15412 3.56372 3.67651 3.76524 3.89243 4.08190 4.21513 4.26298 4.31758 4.33312 4.41093 4.44789 4.48617 4.65380 4.68283 4.72002 4.75520 4.83980 4.88832 5.00225 5.07862 5.14655 5.18082 5.23193 5.35262 5.45968 5.51125 5.69006 5.79665 5.83138 6.10465 6.23900 6.33657 6.61512 6.88490 7.39935 8.93806 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.002867 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.865735 B = 9764.085721 C =10391.863188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.516 3.484 4 O -0.536 6.536 5 C -0.147 4.147 6 C -0.057 4.057 7 C -0.132 4.132 8 C -0.044 4.044 9 C -0.088 4.088 10 C -0.056 4.056 11 C -0.071 4.071 12 C 0.048 3.952 13 N -0.548 5.548 14 C 0.079 3.921 15 C 0.035 3.965 16 C -0.542 4.542 17 H 0.061 0.939 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.965 3.035 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.280 1.280 24 C 0.090 3.910 25 H 0.062 0.938 26 H 0.135 0.865 27 H 0.064 0.936 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.026 0.974 37 H -0.004 1.004 38 H -0.009 1.009 39 H 0.263 0.737 40 H 0.053 0.947 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.298 0.444 8.811 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.362 3.638 4 O -0.428 6.428 5 C -0.148 4.148 6 C -0.075 4.075 7 C -0.150 4.150 8 C -0.045 4.045 9 C -0.088 4.088 10 C -0.074 4.074 11 C -0.108 4.108 12 C -0.079 4.079 13 N -0.272 5.272 14 C -0.048 4.048 15 C -0.002 4.002 16 C -0.580 4.580 17 H 0.079 0.921 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.789 3.211 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.205 1.205 24 C -0.038 4.038 25 H 0.081 0.919 26 H 0.153 0.847 27 H 0.083 0.917 28 H 0.177 0.823 29 H 0.164 0.836 30 H 0.160 0.840 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.014 0.986 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.625 0.688 8.192 22.203 hybrid contribution 1.056 -0.306 0.431 1.181 sum -19.569 0.381 8.623 21.388 Atomic orbital electron populations 1.23612 0.74141 1.05986 1.02696 1.86539 1.25363 1.31552 1.83774 1.21282 0.89194 0.81535 0.71751 1.90801 1.67382 1.36949 1.47639 1.19100 0.88865 0.95567 1.11282 1.21493 0.93139 0.98417 0.94497 1.21287 0.94837 0.97595 1.01287 1.20119 0.94929 0.93766 0.95637 1.19702 0.92522 0.95938 1.00655 1.21238 0.93572 0.97161 0.95407 1.20594 0.93959 0.92692 1.03523 1.22249 0.95015 0.95666 0.95004 1.62300 1.06671 1.03280 1.54961 1.22036 0.84933 1.00322 0.97538 1.18925 0.93907 0.93702 0.93683 1.21657 0.92908 1.24724 1.18730 0.92079 1.25944 1.04007 0.94891 0.94848 1.70112 1.37196 1.27686 1.22127 0.85407 0.79320 0.78131 0.78219 1.18526 1.20443 1.20542 1.20994 0.90683 0.92655 0.99467 0.91886 0.84681 0.91696 0.82336 0.83599 0.84002 0.89712 0.87709 0.89218 0.94062 0.91226 0.95622 0.98576 0.99054 0.92820 0.92901 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -7.01 9.83 -56.19 -0.55 -7.56 16 3 C 0.52 12.53 7.90 70.33 0.56 13.09 16 4 O -0.54 -15.34 16.14 19.95 0.32 -15.02 16 5 C -0.15 -3.54 5.87 -20.14 -0.12 -3.66 16 6 C -0.06 -1.25 9.62 22.49 0.22 -1.03 16 7 C -0.13 -3.18 9.62 22.30 0.21 -2.97 16 8 C -0.04 -1.24 5.81 -19.76 -0.11 -1.35 16 9 C -0.09 -2.28 5.77 -19.86 -0.11 -2.40 16 10 C -0.06 -1.36 9.20 22.59 0.21 -1.15 16 11 C -0.07 -1.63 5.94 29.82 0.18 -1.45 16 12 C 0.05 1.29 5.57 86.22 0.48 1.77 16 13 N -0.55 -19.22 4.68 -901.17 -4.21 -23.43 16 14 C 0.08 3.22 4.89 86.30 0.42 3.64 16 15 C 0.04 1.85 4.91 29.85 0.15 1.99 16 16 C -0.54 -30.41 9.11 25.60 0.23 -30.18 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.00 0.06 5.46 84.66 0.46 0.52 16 19 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 20 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 21 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 C 0.09 2.95 4.91 85.60 0.42 3.37 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.16 2.66 7.62 -2.91 -0.02 2.64 16 29 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 30 H 0.14 3.20 7.64 -2.91 -0.02 3.18 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.09 2.21 7.85 -2.39 -0.02 2.19 16 34 H 0.04 1.05 8.05 -2.39 -0.02 1.03 16 35 H 0.07 2.75 7.89 -2.38 -0.02 2.73 16 36 H 0.03 1.02 8.06 -2.39 -0.02 1.00 16 37 H 0.00 -0.23 6.66 -2.38 -0.02 -0.24 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 39 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 40 H 0.05 1.67 8.07 -2.39 -0.02 1.65 16 41 H 0.08 2.91 6.65 -2.39 -0.02 2.89 16 Total: -1.00 -68.57 341.36 3.27 -65.30 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.02 Total: 9.21 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 4.39 Total: -18.26 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -3.93 Total: -79.54 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.23 Total: -22.57 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.57 3.27 -65.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880349420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.599 kcal (2) G-P(sol) polarization free energy of solvation -68.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds