Wall clock time and date at job start Tue Mar 31 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99773 * 2 1 4 4 H 1.08990 * 112.91022 * 341.26064 * 3 2 1 5 5 C 1.54053 * 113.60876 * 112.62334 * 3 2 1 6 6 C 1.53779 * 87.08132 * 89.07083 * 5 3 2 7 7 H 1.08998 * 113.61568 * 270.88479 * 6 5 3 8 8 C 1.52992 * 113.61697 * 139.97363 * 6 5 3 9 9 N 1.46507 * 109.47106 * 87.50523 * 8 6 5 10 10 C 1.34777 * 119.99924 * 179.97438 * 9 8 6 11 11 O 1.21541 * 120.00251 * 0.02562 * 10 9 8 12 12 C 1.47885 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.39918 * 120.02711 * 359.73016 * 12 10 9 14 14 C 1.38330 * 120.35706 * 179.71330 * 13 12 10 15 15 C 1.37754 * 120.41235 * 0.56352 * 14 13 12 16 16 C 1.40748 * 120.04033 * 359.71195 * 15 14 13 17 17 C 1.41435 * 120.17826 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00304 * 24.44137 * 17 16 15 19 19 C 1.39941 * 119.99846 * 204.44460 * 17 16 15 20 20 N 1.30824 * 120.00001 * 17.87507 * 19 17 16 21 21 Si 1.86799 * 119.99978 * 197.88176 * 19 17 16 22 22 H 1.48504 * 109.47239 * 59.99426 * 21 19 17 23 23 H 1.48494 * 109.47379 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47028 * 299.99641 * 21 19 17 25 25 C 1.39000 * 120.02484 * 179.97438 * 12 10 9 26 26 C 1.53782 * 113.61542 * 209.99772 * 3 2 1 27 27 H 1.08998 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46779 * 299.99254 * 1 2 3 29 29 H 1.09000 * 109.46894 * 59.99652 * 1 2 3 30 30 H 1.09010 * 113.62256 * 334.52544 * 5 3 2 31 31 H 1.09000 * 113.68973 * 203.63099 * 5 3 2 32 32 H 1.08996 * 109.47821 * 207.50445 * 8 6 5 33 33 H 1.09001 * 109.47222 * 327.50736 * 8 6 5 34 34 H 0.96997 * 119.99439 * 0.02562 * 9 8 6 35 35 H 1.07997 * 119.82366 * 359.97438 * 13 12 10 36 36 H 1.08004 * 119.79335 * 180.25648 * 14 13 12 37 37 H 1.07997 * 119.98067 * 179.74091 * 15 14 13 38 38 H 0.97007 * 119.99887 * 180.02562 * 20 19 17 39 39 H 1.08004 * 120.20024 * 359.97438 * 25 12 10 40 40 H 1.08998 * 113.61374 * 156.33487 * 26 3 2 41 41 H 1.09001 * 113.60959 * 25.52261 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0797 -0.3225 5 6 2.7572 1.6483 1.3030 6 6 4.0084 1.0320 0.6553 7 1 4.1103 -0.0384 0.8339 8 6 5.2941 1.8091 0.9443 9 7 5.8815 1.3322 2.1989 10 6 7.0269 1.8757 2.6561 11 8 7.5724 2.7618 2.0280 12 6 7.6194 1.3947 3.9228 13 6 6.9883 0.3793 4.6498 14 6 7.5397 -0.0799 5.8325 15 6 8.7097 0.4647 6.3142 16 6 9.3558 1.4908 5.5996 17 6 10.5576 2.0516 6.0911 18 1 11.1886 1.4795 6.7552 19 6 10.9290 3.3480 5.7172 20 7 10.0381 4.1651 5.2171 21 14 12.6970 3.9116 5.9319 22 1 13.5954 3.0372 5.1360 23 1 12.8297 5.3144 5.4633 24 1 13.0714 3.8310 7.3667 25 6 8.8010 1.9544 4.3947 26 6 3.3756 1.3720 -0.7045 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.3977 1.0955 2.1710 31 1 2.8442 2.7187 1.4892 32 1 6.0024 1.6556 0.1301 33 1 5.0650 2.8713 1.0310 34 1 5.4463 0.6249 2.6999 35 1 6.0681 -0.0511 4.2836 36 1 7.0470 -0.8669 6.3842 37 1 9.1318 0.1037 7.2404 38 1 10.2957 5.0636 4.9575 39 1 9.2896 2.7408 3.8386 40 1 3.6311 2.3671 -1.0684 41 1 3.5164 0.5967 -1.4577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881573340.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:15 Heat of formation + Delta-G solvation = -48.760330 kcal Electronic energy + Delta-G solvation = -21978.889129 eV Core-core repulsion = 18630.930240 eV Total energy + Delta-G solvation = -3347.958889 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.97886 -38.93390 -37.04149 -36.34196 -33.89927 -33.52887 -30.32668 -29.41501 -27.96085 -26.65190 -25.86727 -25.24575 -23.16642 -21.80511 -20.88377 -19.98326 -19.20522 -17.73253 -16.79840 -16.16446 -15.75545 -15.54001 -15.43812 -15.08006 -14.81382 -14.58096 -13.98457 -13.70706 -13.41211 -13.13927 -12.85325 -12.62327 -12.54801 -12.43528 -12.07915 -11.74730 -11.60979 -11.13323 -11.06139 -10.95285 -10.82278 -10.70970 -10.48214 -10.34811 -10.00376 -9.76151 -9.66982 -9.18957 -8.96321 -8.58234 -7.60109 -7.49730 -6.78219 -4.39425 2.24829 2.84295 3.08635 3.10429 3.18468 3.37616 3.71971 3.90516 3.94218 4.39457 4.44532 4.61293 4.67140 4.69866 4.97938 5.07368 5.14585 5.29556 5.34023 5.51262 5.60064 5.62627 5.69486 5.71487 5.83739 5.96449 6.05898 6.12410 6.25861 6.30978 6.74317 6.93262 6.94454 7.01249 7.05226 7.23617 7.40693 7.73017 7.79125 7.95364 8.13993 8.22494 8.52821 8.82192 8.85879 9.00768 10.16496 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.002983 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.272025 B = 9383.081450 C =10063.587517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.060 3.940 4 H 0.074 0.926 5 C -0.154 4.154 6 C -0.115 4.115 7 H 0.099 0.901 8 C 0.131 3.869 9 N -0.735 5.735 10 C 0.562 3.438 11 O -0.548 6.548 12 C -0.128 4.128 13 C -0.217 4.217 14 C -0.098 4.098 15 C -0.212 4.212 16 C 0.098 3.902 17 C -0.461 4.461 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.093 4.093 26 C -0.131 4.131 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.399 0.601 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.285 0.715 39 H 0.134 0.866 40 H 0.096 0.904 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.913 -4.333 -8.786 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C 0.002 3.998 4 H 0.092 0.908 5 C -0.192 4.192 6 C -0.133 4.133 7 H 0.118 0.882 8 C 0.007 3.993 9 N -0.389 5.389 10 C 0.353 3.647 11 O -0.427 6.427 12 C -0.131 4.131 13 C -0.238 4.238 14 C -0.116 4.116 15 C -0.232 4.232 16 C 0.096 3.904 17 C -0.489 4.489 18 H 0.099 0.901 19 C -0.146 4.146 20 N -0.408 5.408 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.190 1.190 25 C -0.113 4.113 26 C -0.169 4.169 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.234 0.766 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.152 0.848 40 H 0.114 0.886 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.449 -3.589 -9.336 17.573 hybrid contribution 0.202 0.189 0.410 0.494 sum -14.247 -3.401 -8.926 17.153 Atomic orbital electron populations 1.22806 0.80984 1.02767 0.99982 1.87886 1.19643 1.26664 1.94597 1.23137 0.94403 0.84994 0.97237 0.90833 1.23612 0.96243 1.01616 0.97690 1.22718 0.93279 1.00679 0.96650 0.88248 1.21249 0.93307 0.97893 0.86882 1.45941 1.26381 1.41639 1.24954 1.18849 0.79425 0.81027 0.85411 1.90686 1.61825 1.30826 1.59334 1.19491 0.98649 1.00299 0.94666 1.20344 1.01488 1.02714 0.99214 1.20435 0.96382 0.98961 0.95857 1.21095 0.97621 1.04000 1.00530 1.17599 0.92138 0.90579 0.90097 1.19554 1.04953 0.98544 1.25893 0.90118 1.25968 0.99234 0.96495 0.92906 1.69787 1.34748 1.06480 1.29753 0.86325 0.82370 0.78127 0.79690 1.18719 1.20239 1.18972 1.21643 0.94281 0.99860 0.95536 1.23179 0.93986 1.02882 0.96850 0.89602 0.93935 0.94044 0.90679 0.88964 0.91830 0.91823 0.76572 0.89240 0.88926 0.88643 0.90398 0.84849 0.88597 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.85 101.05 1.10 1.31 16 2 O -0.37 -3.77 10.63 -35.23 -0.37 -4.15 16 3 C 0.06 0.55 4.39 -25.77 -0.11 0.44 16 4 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 5 C -0.15 -1.53 7.47 -25.78 -0.19 -1.73 16 6 C -0.11 -1.25 3.69 -89.81 -0.33 -1.58 16 7 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 8 C 0.13 1.84 5.51 -4.04 -0.02 1.82 16 9 N -0.74 -12.48 5.51 -61.24 -0.34 -12.82 16 10 C 0.56 12.59 7.77 -12.31 -0.10 12.50 16 11 O -0.55 -14.05 16.33 5.33 0.09 -13.97 16 12 C -0.13 -3.08 5.87 -105.04 -0.62 -3.69 16 13 C -0.22 -4.65 9.55 -38.92 -0.37 -5.02 16 14 C -0.10 -2.12 10.01 -39.72 -0.40 -2.52 16 15 C -0.21 -5.11 9.78 -38.81 -0.38 -5.49 16 16 C 0.10 2.64 5.57 -106.87 -0.60 2.04 16 17 C -0.46 -12.22 9.05 -37.73 -0.34 -12.56 16 18 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 19 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 20 N -0.78 -20.99 10.96 55.55 0.61 -20.38 16 21 Si 0.91 18.96 29.59 -169.99 -5.03 13.93 16 22 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 C -0.09 -2.52 8.24 -38.44 -0.32 -2.84 16 26 C -0.13 -1.20 7.46 -25.92 -0.19 -1.40 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.09 0.89 7.89 -51.93 -0.41 0.48 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.93 7.84 -51.93 -0.41 0.52 16 34 H 0.40 5.96 6.49 -40.82 -0.26 5.70 16 35 H 0.09 1.59 6.38 -52.49 -0.33 1.25 16 36 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 37 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 39 H 0.13 3.91 5.74 -52.48 -0.30 3.60 16 40 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -30.73 344.33 -8.72 -39.45 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.90 Total: 9.68 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -2.96 Total: -16.94 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.27 Total: -33.20 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.29 Total: -18.11 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.73 -8.72 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881573340.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.306 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds