Wall clock time and date at job start Tue Mar 31 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99773 * 2 1 4 4 H 1.08990 * 112.91022 * 341.26064 * 3 2 1 5 5 C 1.54053 * 113.60876 * 112.62334 * 3 2 1 6 6 C 1.53779 * 87.08132 * 89.07083 * 5 3 2 7 7 H 1.08998 * 113.61568 * 270.88479 * 6 5 3 8 8 C 1.52992 * 113.61697 * 139.97363 * 6 5 3 9 9 N 1.46507 * 109.47106 * 87.50523 * 8 6 5 10 10 C 1.34777 * 119.99924 * 179.97438 * 9 8 6 11 11 O 1.21541 * 120.00251 * 0.02562 * 10 9 8 12 12 C 1.47885 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.39918 * 120.02711 * 359.73016 * 12 10 9 14 14 C 1.38330 * 120.35706 * 179.71330 * 13 12 10 15 15 C 1.37754 * 120.41235 * 0.56352 * 14 13 12 16 16 C 1.40748 * 120.04033 * 359.71195 * 15 14 13 17 17 C 1.41435 * 120.17826 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00304 * 24.44137 * 17 16 15 19 19 C 1.39941 * 119.99846 * 204.44460 * 17 16 15 20 20 N 1.30824 * 120.00001 * 17.87507 * 19 17 16 21 21 Si 1.86799 * 119.99978 * 197.88176 * 19 17 16 22 22 H 1.48504 * 109.47239 * 59.99426 * 21 19 17 23 23 H 1.48494 * 109.47379 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47028 * 299.99641 * 21 19 17 25 25 C 1.39000 * 120.02484 * 179.97438 * 12 10 9 26 26 C 1.53782 * 113.61542 * 209.99772 * 3 2 1 27 27 H 1.08998 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46779 * 299.99254 * 1 2 3 29 29 H 1.09000 * 109.46894 * 59.99652 * 1 2 3 30 30 H 1.09010 * 113.62256 * 334.52544 * 5 3 2 31 31 H 1.09000 * 113.68973 * 203.63099 * 5 3 2 32 32 H 1.08996 * 109.47821 * 207.50445 * 8 6 5 33 33 H 1.09001 * 109.47222 * 327.50736 * 8 6 5 34 34 H 0.96997 * 119.99439 * 0.02562 * 9 8 6 35 35 H 1.07997 * 119.82366 * 359.97438 * 13 12 10 36 36 H 1.08004 * 119.79335 * 180.25648 * 14 13 12 37 37 H 1.07997 * 119.98067 * 179.74091 * 15 14 13 38 38 H 0.97007 * 119.99887 * 180.02562 * 20 19 17 39 39 H 1.08004 * 120.20024 * 359.97438 * 25 12 10 40 40 H 1.08998 * 113.61374 * 156.33487 * 26 3 2 41 41 H 1.09001 * 113.60959 * 25.52261 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0797 -0.3225 5 6 2.7572 1.6483 1.3030 6 6 4.0084 1.0320 0.6553 7 1 4.1103 -0.0384 0.8339 8 6 5.2941 1.8091 0.9443 9 7 5.8815 1.3322 2.1989 10 6 7.0269 1.8757 2.6561 11 8 7.5724 2.7618 2.0280 12 6 7.6194 1.3947 3.9228 13 6 6.9883 0.3793 4.6498 14 6 7.5397 -0.0799 5.8325 15 6 8.7097 0.4647 6.3142 16 6 9.3558 1.4908 5.5996 17 6 10.5576 2.0516 6.0911 18 1 11.1886 1.4795 6.7552 19 6 10.9290 3.3480 5.7172 20 7 10.0381 4.1651 5.2171 21 14 12.6970 3.9116 5.9319 22 1 13.5954 3.0372 5.1360 23 1 12.8297 5.3144 5.4633 24 1 13.0714 3.8310 7.3667 25 6 8.8010 1.9544 4.3947 26 6 3.3756 1.3720 -0.7045 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.3977 1.0955 2.1710 31 1 2.8442 2.7187 1.4892 32 1 6.0024 1.6556 0.1301 33 1 5.0650 2.8713 1.0310 34 1 5.4463 0.6249 2.6999 35 1 6.0681 -0.0511 4.2836 36 1 7.0470 -0.8669 6.3842 37 1 9.1318 0.1037 7.2404 38 1 10.2957 5.0636 4.9575 39 1 9.2896 2.7408 3.8386 40 1 3.6311 2.3671 -1.0684 41 1 3.5164 0.5967 -1.4577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881573340.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:15 Heat of formation + Delta-G solvation = -67.969006 kcal Electronic energy + Delta-G solvation = -21979.722080 eV Core-core repulsion = 18630.930240 eV Total energy + Delta-G solvation = -3348.791839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.10185 -40.33127 -38.80379 -37.26014 -35.67089 -35.09051 -32.12915 -31.28066 -29.11516 -27.38968 -27.08781 -26.60575 -24.50009 -23.21819 -22.70709 -21.35203 -20.39420 -19.45640 -18.10640 -17.32391 -17.17183 -16.74598 -16.55429 -16.44993 -16.23670 -15.90540 -15.48047 -15.07350 -14.89892 -14.44923 -14.30874 -14.21316 -13.85735 -13.47289 -13.33152 -12.94432 -12.84239 -12.79894 -12.52399 -12.45734 -12.20248 -11.91522 -11.82672 -11.59006 -11.51118 -11.17409 -11.06568 -10.73541 -10.43303 -10.11489 -9.46858 -9.38610 -8.66724 -6.38279 0.38281 1.01212 1.36061 1.47991 1.50737 2.10328 2.19375 2.27646 2.75770 2.78848 3.59462 3.63129 3.70134 3.79871 3.90113 4.07076 4.29880 4.37051 4.43967 4.57444 4.59597 4.59642 4.67128 4.75786 4.81014 4.88048 4.90571 4.92541 5.08549 5.10375 5.19381 5.21255 5.31191 5.33038 5.50848 5.55031 5.86700 5.92760 6.05242 6.28552 6.32257 6.51502 6.69369 6.87554 6.94629 7.31914 8.30000 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030518 B = 0.002983 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.272025 B = 9383.081450 C =10063.587517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.065 3.935 4 H 0.093 0.907 5 C -0.154 4.154 6 C -0.111 4.111 7 H 0.099 0.901 8 C 0.130 3.870 9 N -0.711 5.711 10 C 0.558 3.442 11 O -0.591 6.591 12 C -0.139 4.139 13 C -0.198 4.198 14 C -0.096 4.096 15 C -0.218 4.218 16 C 0.066 3.934 17 C -0.498 4.498 18 H 0.085 0.915 19 C 0.028 3.972 20 N -0.825 5.825 21 Si 0.984 3.016 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.252 1.252 25 C -0.133 4.133 26 C -0.127 4.127 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.412 0.588 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.287 0.713 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.871 -5.825 -8.830 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C 0.007 3.993 4 H 0.111 0.889 5 C -0.191 4.191 6 C -0.130 4.130 7 H 0.117 0.883 8 C 0.007 3.993 9 N -0.364 5.364 10 C 0.348 3.652 11 O -0.473 6.473 12 C -0.142 4.142 13 C -0.218 4.218 14 C -0.113 4.113 15 C -0.238 4.238 16 C 0.064 3.936 17 C -0.527 4.527 18 H 0.103 0.897 19 C -0.186 4.186 20 N -0.451 5.451 21 Si 0.804 3.196 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.175 1.175 25 C -0.153 4.153 26 C -0.164 4.164 27 H 0.113 0.887 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.249 0.751 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.466 -5.129 -9.376 19.631 hybrid contribution 0.601 0.505 0.390 0.877 sum -15.865 -4.625 -8.986 18.811 Atomic orbital electron populations 1.22986 0.79497 1.03762 1.00865 1.87852 1.21382 1.27256 1.94657 1.23116 0.94642 0.85285 0.96274 0.88915 1.23623 0.95692 1.01643 0.98167 1.22685 0.91703 1.00107 0.98456 0.88269 1.21445 0.94547 0.98268 0.85067 1.45777 1.24377 1.40710 1.25532 1.18762 0.80623 0.80879 0.84983 1.90661 1.63410 1.32849 1.60376 1.19803 0.98018 1.00725 0.95699 1.20842 1.02114 1.00574 0.98253 1.20927 0.95306 0.99246 0.95863 1.21411 0.98424 1.03098 1.00819 1.17957 0.93063 0.91989 0.90580 1.19846 1.05934 0.99518 1.27404 0.89719 1.26881 1.03455 0.96211 0.92102 1.69890 1.36907 1.06879 1.31401 0.85231 0.76567 0.77630 0.80191 1.18513 1.19646 1.17532 1.21457 0.96398 1.01003 0.96456 1.23202 0.93840 1.03565 0.95841 0.88680 0.93368 0.92821 0.90893 0.88722 0.92523 0.92241 0.75060 0.84731 0.84336 0.87291 0.90281 0.88314 0.87499 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.85 113.37 1.23 1.51 16 2 O -0.39 -7.03 10.63 -148.98 -1.58 -8.62 16 3 C 0.06 1.00 4.39 31.21 0.14 1.14 16 4 H 0.09 1.10 7.87 -2.39 -0.02 1.08 16 5 C -0.15 -2.70 7.47 31.21 0.23 -2.46 16 6 C -0.11 -2.18 3.69 -10.27 -0.04 -2.22 16 7 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 8 C 0.13 3.52 5.51 86.38 0.48 4.00 16 9 N -0.71 -23.20 5.51 -465.94 -2.57 -25.76 16 10 C 0.56 25.20 7.77 86.80 0.67 25.88 16 11 O -0.59 -31.50 16.33 -3.85 -0.06 -31.56 16 12 C -0.14 -6.74 5.87 -20.13 -0.12 -6.86 16 13 C -0.20 -7.95 9.55 22.70 0.22 -7.73 16 14 C -0.10 -3.84 10.01 22.18 0.22 -3.62 16 15 C -0.22 -10.32 9.78 22.77 0.22 -10.10 16 16 C 0.07 3.67 5.57 -21.32 -0.12 3.55 16 17 C -0.50 -27.47 9.05 23.47 0.21 -27.26 16 18 H 0.08 4.39 7.91 -2.91 -0.02 4.36 16 19 C 0.03 1.51 5.14 85.26 0.44 1.95 16 20 N -0.83 -46.73 10.96 21.83 0.24 -46.49 16 21 Si 0.98 40.09 29.59 68.60 2.03 42.12 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 25 C -0.13 -7.52 8.24 23.01 0.19 -7.33 16 26 C -0.13 -2.04 7.46 31.12 0.23 -1.80 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.09 1.63 7.89 -2.39 -0.02 1.61 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.70 7.84 -2.39 -0.02 1.68 16 34 H 0.41 11.12 6.49 -92.71 -0.60 10.52 16 35 H 0.14 4.13 6.38 -2.91 -0.02 4.11 16 36 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.29 14.97 8.30 -92.70 -0.77 14.21 16 39 H 0.10 6.23 5.74 -2.91 -0.02 6.21 16 40 H 0.11 1.49 8.10 -2.39 -0.02 1.47 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.71 344.33 2.70 -68.01 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.43 Total: 33.66 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 4.21 Total: -31.35 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -2.33 Total: -72.25 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.65 Total: -40.18 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -70.71 2.70 -68.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881573340.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.040 kcal (2) G-P(sol) polarization free energy of solvation -70.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds