Wall clock time and date at job start Tue Mar 31 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99837 * 2 1 4 4 H 1.09002 * 112.84757 * 18.80648 * 3 2 1 5 5 C 1.53780 * 113.61307 * 149.99962 * 3 2 1 6 6 C 1.53775 * 87.08171 * 89.11865 * 5 3 2 7 7 H 1.08996 * 113.61594 * 270.80110 * 6 5 3 8 8 C 1.52998 * 113.61660 * 139.97602 * 6 5 3 9 9 N 1.46505 * 109.46972 * 174.99984 * 8 6 5 10 10 C 1.34776 * 119.99731 * 180.02562 * 9 8 6 11 11 O 1.21598 * 120.00231 * 359.97438 * 10 9 8 12 12 C 1.47635 * 120.00057 * 180.02562 * 10 9 8 13 13 C 1.40017 * 119.89635 * 179.97438 * 12 10 9 14 14 C 1.36316 * 120.10501 * 179.97438 * 13 12 10 15 15 C 1.40886 * 119.89497 * 0.27743 * 14 13 12 16 16 C 1.41111 * 120.10498 * 179.70222 * 15 14 13 17 17 H 1.07993 * 120.00059 * 24.53396 * 16 15 14 18 18 C 1.40229 * 119.99985 * 204.53365 * 16 15 14 19 19 N 1.30645 * 119.99539 * 17.73820 * 18 16 15 20 20 Si 1.86796 * 120.00123 * 197.73582 * 18 16 15 21 21 H 1.48494 * 109.47220 * 90.00150 * 20 18 16 22 22 H 1.48499 * 109.47018 * 210.00188 * 20 18 16 23 23 H 1.48504 * 109.46952 * 330.00281 * 20 18 16 24 24 C 1.40896 * 119.79041 * 359.44403 * 15 14 13 25 25 C 1.36312 * 119.89098 * 0.55810 * 24 15 14 26 26 C 1.53778 * 113.61447 * 247.50092 * 3 2 1 27 27 H 1.09001 * 109.47679 * 299.99732 * 1 2 3 28 28 H 1.08999 * 109.47382 * 60.00174 * 1 2 3 29 29 H 1.09005 * 109.47197 * 179.97438 * 1 2 3 30 30 H 1.08999 * 113.61195 * 334.56915 * 5 3 2 31 31 H 1.09005 * 113.68701 * 203.67643 * 5 3 2 32 32 H 1.09008 * 109.46910 * 55.00387 * 8 6 5 33 33 H 1.08993 * 109.47524 * 295.00268 * 8 6 5 34 34 H 0.96998 * 120.00439 * 359.97438 * 9 8 6 35 35 H 1.07992 * 119.94878 * 359.95327 * 13 12 10 36 36 H 1.08005 * 120.05408 * 180.02562 * 14 13 12 37 37 H 0.97005 * 119.99485 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.05213 * 180.25201 * 24 15 14 39 39 H 1.07994 * 119.94972 * 179.74254 * 25 24 15 40 40 H 1.09003 * 113.61118 * 156.33959 * 26 3 2 41 41 H 1.08998 * 113.61694 * 25.43256 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0789 0.3238 5 6 3.3755 1.3720 0.7045 6 6 4.0061 1.0332 -0.6565 7 1 4.1098 -0.0370 -0.8354 8 6 5.2908 1.8115 -0.9475 9 7 5.8761 1.3356 -2.2033 10 6 7.0203 1.8801 -2.6624 11 8 7.5665 2.7667 -2.0346 12 6 7.6100 1.4010 -3.9283 13 6 8.7984 1.9687 -4.4035 14 6 9.3468 1.5292 -5.5715 15 6 8.7128 0.5062 -6.3038 16 6 9.2733 0.0522 -7.5167 17 1 10.3314 0.1676 -7.6991 18 6 8.4563 -0.5488 -8.4850 19 7 7.1608 -0.3866 -8.4385 20 14 9.2202 -1.5812 -9.8414 21 1 9.3087 -2.9953 -9.3969 22 1 8.3776 -1.4976 -11.0613 23 1 10.5818 -1.0714 -10.1442 24 6 7.5202 -0.0660 -5.8186 25 6 6.9793 0.3800 -4.6496 26 6 2.7533 1.6490 -1.3018 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5169 0.5958 1.4566 31 1 3.6321 2.3666 1.0692 32 1 6.0006 1.6579 -0.1346 33 1 5.0608 2.8734 -1.0332 34 1 5.4407 0.6281 -2.7041 35 1 9.2812 2.7562 -3.8440 36 1 10.2638 1.9674 -5.9371 37 1 6.5956 -0.8020 -9.1086 38 1 7.0328 -0.8533 -6.3744 39 1 6.0630 -0.0550 -4.2789 40 1 2.8388 2.7199 -1.4862 41 1 2.3925 1.0965 -2.1693 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881576116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:18 Heat of formation + Delta-G solvation = -52.879709 kcal Electronic energy + Delta-G solvation = -21823.252425 eV Core-core repulsion = 18475.114906 eV Total energy + Delta-G solvation = -3348.137518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.95140 -38.85193 -37.12703 -36.32155 -33.84902 -33.66222 -30.34303 -29.42463 -28.08060 -26.72350 -25.89720 -25.52681 -22.82949 -21.64499 -20.86245 -19.96953 -19.24429 -17.51404 -17.12395 -16.40621 -15.73593 -15.62685 -15.43731 -15.31233 -14.75449 -14.11483 -13.95704 -13.72144 -13.39124 -13.14337 -12.82944 -12.62546 -12.59609 -12.10692 -12.04771 -11.86030 -11.70184 -11.33788 -11.27717 -10.97423 -10.88854 -10.78747 -10.61201 -10.31513 -10.01833 -9.73843 -9.54027 -9.34220 -8.91636 -8.52051 -7.69937 -7.52064 -7.02032 -4.58618 2.25934 2.92902 2.96805 2.99044 3.05592 3.40214 3.75139 3.82034 3.90558 4.42465 4.48113 4.58541 4.65694 4.73122 5.00474 5.10161 5.16931 5.33501 5.36989 5.52595 5.58609 5.63689 5.74102 5.77142 5.90836 6.06251 6.07469 6.14975 6.31305 6.34195 6.78686 6.84541 6.97116 6.99058 7.10261 7.15702 7.45627 7.67964 7.81833 7.88048 8.09009 8.29764 8.41795 8.64901 8.77288 9.12751 9.90114 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.003047 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.291234 B = 9186.109295 C =10400.068479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.061 3.939 4 H 0.073 0.927 5 C -0.131 4.131 6 C -0.115 4.115 7 H 0.099 0.901 8 C 0.133 3.867 9 N -0.740 5.740 10 C 0.570 3.430 11 O -0.578 6.578 12 C -0.284 4.284 13 C -0.023 4.023 14 C -0.239 4.239 15 C 0.128 3.872 16 C -0.443 4.443 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.772 5.772 20 Si 0.914 3.086 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.179 4.179 25 C -0.062 4.062 26 C -0.154 4.154 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.397 0.603 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.286 0.714 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.961 -0.833 10.391 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C 0.003 3.997 4 H 0.091 0.909 5 C -0.169 4.169 6 C -0.134 4.134 7 H 0.117 0.883 8 C 0.009 3.991 9 N -0.393 5.393 10 C 0.365 3.635 11 O -0.461 6.461 12 C -0.288 4.288 13 C -0.042 4.042 14 C -0.259 4.259 15 C 0.125 3.875 16 C -0.471 4.471 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.396 5.396 20 Si 0.738 3.262 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.198 4.198 25 C -0.081 4.081 26 C -0.192 4.192 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.706 -0.418 10.712 15.873 hybrid contribution -0.311 -0.585 -0.962 1.168 sum -12.017 -1.003 9.750 15.507 Atomic orbital electron populations 1.22805 0.80990 1.02779 0.99958 1.87889 1.19636 1.26649 1.94603 1.23089 0.94392 0.85002 0.97255 0.90904 1.23179 0.94041 1.02810 0.96881 1.22727 0.93361 1.00726 0.96546 0.88268 1.21196 0.93216 0.97695 0.86995 1.45896 1.26732 1.41856 1.24836 1.18595 0.79050 0.80658 0.85203 1.90628 1.62580 1.32379 1.60468 1.18922 1.02382 1.08629 0.98872 1.20365 0.93194 0.96257 0.94365 1.20718 1.03552 1.02665 0.98939 1.17791 0.90708 0.87669 0.91313 1.19850 0.96343 1.31610 0.99316 0.89721 1.26098 0.94554 0.94645 0.99389 1.69749 1.05251 1.32357 1.32202 0.86205 0.80362 0.80499 0.79180 1.18943 1.20043 1.18294 1.20979 0.99542 1.03203 0.96050 1.20477 0.97005 0.95498 0.95169 1.23561 0.96290 1.01567 0.97748 0.94065 0.93934 0.89597 0.90376 0.88648 0.92060 0.92074 0.76754 0.88126 0.88400 0.90269 0.86211 0.89330 0.89017 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.33 16 2 O -0.37 -3.92 10.63 -35.23 -0.37 -4.30 16 3 C 0.06 0.57 4.37 -25.92 -0.11 0.46 16 4 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 5 C -0.13 -1.23 7.47 -25.92 -0.19 -1.42 16 6 C -0.11 -1.29 3.69 -89.81 -0.33 -1.62 16 7 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 8 C 0.13 1.89 5.51 -4.04 -0.02 1.87 16 9 N -0.74 -12.70 5.50 -61.31 -0.34 -13.04 16 10 C 0.57 12.42 7.76 -12.42 -0.10 12.33 16 11 O -0.58 -14.08 16.32 5.28 0.09 -14.00 16 12 C -0.28 -6.60 5.89 -104.73 -0.62 -7.22 16 13 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 14 C -0.24 -5.87 9.73 -39.27 -0.38 -6.25 16 15 C 0.13 3.30 5.57 -106.80 -0.60 2.71 16 16 C -0.44 -11.11 9.04 -37.74 -0.34 -11.45 16 17 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 19 N -0.77 -18.60 10.95 55.56 0.61 -17.99 16 20 Si 0.91 17.38 29.60 -169.99 -5.03 12.35 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 22 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 24 C -0.18 -4.42 8.63 -39.27 -0.34 -4.76 16 25 C -0.06 -1.40 9.47 -39.61 -0.38 -1.78 16 26 C -0.15 -1.59 7.46 -25.92 -0.19 -1.79 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 33 H 0.06 0.89 7.84 -51.93 -0.41 0.48 16 34 H 0.40 6.20 6.47 -40.82 -0.26 5.93 16 35 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 36 H 0.10 2.24 8.06 -52.48 -0.42 1.81 16 37 H 0.29 6.19 8.29 -40.82 -0.34 5.86 16 38 H 0.12 3.00 6.16 -52.49 -0.32 2.67 16 39 H 0.09 1.70 6.37 -52.49 -0.33 1.37 16 40 H 0.09 0.91 7.90 -51.93 -0.41 0.50 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -29.28 344.06 -8.73 -38.02 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.90 Total: 10.65 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -2.97 Total: -16.87 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 0.27 Total: -31.03 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.29 Total: -18.30 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.28 -8.73 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881576116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.862 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds