Wall clock time and date at job start Tue Mar 31 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99837 * 2 1 4 4 H 1.09002 * 112.84757 * 18.80648 * 3 2 1 5 5 C 1.53780 * 113.61307 * 149.99962 * 3 2 1 6 6 C 1.53775 * 87.08171 * 89.11865 * 5 3 2 7 7 H 1.08996 * 113.61594 * 270.80110 * 6 5 3 8 8 C 1.52998 * 113.61660 * 139.97602 * 6 5 3 9 9 N 1.46505 * 109.46972 * 174.99984 * 8 6 5 10 10 C 1.34776 * 119.99731 * 180.02562 * 9 8 6 11 11 O 1.21598 * 120.00231 * 359.97438 * 10 9 8 12 12 C 1.47635 * 120.00057 * 180.02562 * 10 9 8 13 13 C 1.40017 * 119.89635 * 179.97438 * 12 10 9 14 14 C 1.36316 * 120.10501 * 179.97438 * 13 12 10 15 15 C 1.40886 * 119.89497 * 0.27743 * 14 13 12 16 16 C 1.41111 * 120.10498 * 179.70222 * 15 14 13 17 17 H 1.07993 * 120.00059 * 24.53396 * 16 15 14 18 18 C 1.40229 * 119.99985 * 204.53365 * 16 15 14 19 19 N 1.30645 * 119.99539 * 17.73820 * 18 16 15 20 20 Si 1.86796 * 120.00123 * 197.73582 * 18 16 15 21 21 H 1.48494 * 109.47220 * 90.00150 * 20 18 16 22 22 H 1.48499 * 109.47018 * 210.00188 * 20 18 16 23 23 H 1.48504 * 109.46952 * 330.00281 * 20 18 16 24 24 C 1.40896 * 119.79041 * 359.44403 * 15 14 13 25 25 C 1.36312 * 119.89098 * 0.55810 * 24 15 14 26 26 C 1.53778 * 113.61447 * 247.50092 * 3 2 1 27 27 H 1.09001 * 109.47679 * 299.99732 * 1 2 3 28 28 H 1.08999 * 109.47382 * 60.00174 * 1 2 3 29 29 H 1.09005 * 109.47197 * 179.97438 * 1 2 3 30 30 H 1.08999 * 113.61195 * 334.56915 * 5 3 2 31 31 H 1.09005 * 113.68701 * 203.67643 * 5 3 2 32 32 H 1.09008 * 109.46910 * 55.00387 * 8 6 5 33 33 H 1.08993 * 109.47524 * 295.00268 * 8 6 5 34 34 H 0.96998 * 120.00439 * 359.97438 * 9 8 6 35 35 H 1.07992 * 119.94878 * 359.95327 * 13 12 10 36 36 H 1.08005 * 120.05408 * 180.02562 * 14 13 12 37 37 H 0.97005 * 119.99485 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.05213 * 180.25201 * 24 15 14 39 39 H 1.07994 * 119.94972 * 179.74254 * 25 24 15 40 40 H 1.09003 * 113.61118 * 156.33959 * 26 3 2 41 41 H 1.08998 * 113.61694 * 25.43256 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0789 0.3238 5 6 3.3755 1.3720 0.7045 6 6 4.0061 1.0332 -0.6565 7 1 4.1098 -0.0370 -0.8354 8 6 5.2908 1.8115 -0.9475 9 7 5.8761 1.3356 -2.2033 10 6 7.0203 1.8801 -2.6624 11 8 7.5665 2.7667 -2.0346 12 6 7.6100 1.4010 -3.9283 13 6 8.7984 1.9687 -4.4035 14 6 9.3468 1.5292 -5.5715 15 6 8.7128 0.5062 -6.3038 16 6 9.2733 0.0522 -7.5167 17 1 10.3314 0.1676 -7.6991 18 6 8.4563 -0.5488 -8.4850 19 7 7.1608 -0.3866 -8.4385 20 14 9.2202 -1.5812 -9.8414 21 1 9.3087 -2.9953 -9.3969 22 1 8.3776 -1.4976 -11.0613 23 1 10.5818 -1.0714 -10.1442 24 6 7.5202 -0.0660 -5.8186 25 6 6.9793 0.3800 -4.6496 26 6 2.7533 1.6490 -1.3018 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5169 0.5958 1.4566 31 1 3.6321 2.3666 1.0692 32 1 6.0006 1.6579 -0.1346 33 1 5.0608 2.8734 -1.0332 34 1 5.4407 0.6281 -2.7041 35 1 9.2812 2.7562 -3.8440 36 1 10.2638 1.9674 -5.9371 37 1 6.5956 -0.8020 -9.1086 38 1 7.0328 -0.8533 -6.3744 39 1 6.0630 -0.0550 -4.2789 40 1 2.8388 2.7199 -1.4862 41 1 2.3925 1.0965 -2.1693 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881576116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:17 Heat of formation + Delta-G solvation = -69.848376 kcal Electronic energy + Delta-G solvation = -21823.988241 eV Core-core repulsion = 18475.114906 eV Total energy + Delta-G solvation = -3348.873335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.02160 -40.30116 -38.87810 -37.24359 -35.66761 -35.09188 -32.12382 -31.30103 -29.31810 -27.63842 -27.08626 -26.57913 -24.07913 -23.20050 -22.67540 -21.36795 -20.36458 -19.36688 -18.54525 -17.36174 -17.29736 -16.81534 -16.53338 -16.30199 -15.88945 -15.74576 -15.55934 -15.06743 -14.86296 -14.47038 -14.27229 -13.97178 -13.76452 -13.65663 -13.33027 -13.19256 -12.87668 -12.81939 -12.62835 -12.44455 -12.37239 -11.80865 -11.76792 -11.59394 -11.36806 -11.17118 -11.11306 -10.66419 -10.43938 -10.02891 -9.57560 -9.40202 -8.79407 -6.48335 0.44345 1.14790 1.39058 1.43846 1.53591 2.13008 2.17982 2.42002 2.75683 2.78946 3.61111 3.64893 3.69360 3.81047 3.90544 4.25964 4.30869 4.31774 4.41719 4.44847 4.56939 4.58584 4.69916 4.80264 4.80863 4.87231 4.90860 4.92448 5.03161 5.10768 5.15991 5.22418 5.29946 5.35077 5.57782 5.63831 5.82502 5.94796 5.99557 6.22544 6.32110 6.53888 6.72117 6.77122 6.88971 7.45179 8.15948 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.003047 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.291234 B = 9186.109295 C =10400.068479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.064 3.936 4 H 0.094 0.906 5 C -0.124 4.124 6 C -0.113 4.113 7 H 0.093 0.907 8 C 0.133 3.867 9 N -0.724 5.724 10 C 0.569 3.431 11 O -0.608 6.608 12 C -0.294 4.294 13 C -0.033 4.033 14 C -0.253 4.253 15 C 0.101 3.899 16 C -0.473 4.473 17 H 0.085 0.915 18 C 0.038 3.962 19 N -0.798 5.798 20 Si 0.989 3.011 21 H -0.259 1.259 22 H -0.265 1.265 23 H -0.258 1.258 24 C -0.198 4.198 25 C -0.053 4.053 26 C -0.155 4.155 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.406 0.594 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.297 0.703 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.396 -1.507 10.591 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C 0.006 3.994 4 H 0.112 0.888 5 C -0.162 4.162 6 C -0.132 4.132 7 H 0.112 0.888 8 C 0.010 3.990 9 N -0.375 5.375 10 C 0.363 3.637 11 O -0.493 6.493 12 C -0.299 4.299 13 C -0.052 4.052 14 C -0.273 4.273 15 C 0.098 3.902 16 C -0.500 4.500 17 H 0.103 0.897 18 C -0.182 4.182 19 N -0.421 5.421 20 Si 0.808 3.192 21 H -0.183 1.183 22 H -0.189 1.189 23 H -0.181 1.181 24 C -0.217 4.217 25 C -0.072 4.072 26 C -0.192 4.192 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.243 0.757 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.115 0.885 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.186 -1.101 10.935 17.165 hybrid contribution 0.062 -0.348 -0.967 1.029 sum -13.124 -1.450 9.968 16.544 Atomic orbital electron populations 1.22981 0.79515 1.03719 1.00880 1.87855 1.21386 1.27405 1.94669 1.23090 0.94763 0.85245 0.96266 0.88806 1.23195 0.93663 1.03656 0.95701 1.22690 0.92075 0.99940 0.98508 0.88843 1.21383 0.94297 0.98146 0.85179 1.45799 1.25139 1.41059 1.25540 1.18421 0.80087 0.80548 0.84671 1.90607 1.63768 1.33763 1.61137 1.19204 1.02284 1.08655 0.99725 1.20517 0.93828 0.96519 0.94385 1.20862 1.04107 1.02956 0.99367 1.18145 0.91566 0.88325 0.92158 1.20119 0.96779 1.33168 0.99981 0.89658 1.26939 0.94818 0.95034 1.01370 1.69766 1.06457 1.32590 1.33321 0.85092 0.79403 0.78529 0.76131 1.18334 1.18893 1.18125 1.21016 0.99922 1.03755 0.97056 1.20714 0.97687 0.94695 0.94146 1.23582 0.95862 1.01691 0.98080 0.92639 0.93472 0.88791 0.90274 0.87176 0.92533 0.92100 0.75728 0.87911 0.87739 0.89177 0.86824 0.86061 0.88469 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.85 113.37 1.23 1.55 16 2 O -0.39 -7.59 10.63 -148.98 -1.58 -9.18 16 3 C 0.06 1.05 4.37 31.12 0.14 1.19 16 4 H 0.09 1.15 7.87 -2.39 -0.02 1.13 16 5 C -0.12 -2.04 7.47 31.12 0.23 -1.81 16 6 C -0.11 -2.36 3.69 -10.27 -0.04 -2.39 16 7 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 8 C 0.13 3.61 5.51 86.38 0.48 4.08 16 9 N -0.72 -24.02 5.50 -466.15 -2.57 -26.59 16 10 C 0.57 24.58 7.76 86.72 0.67 25.25 16 11 O -0.61 -29.60 16.32 -4.02 -0.07 -29.67 16 12 C -0.29 -13.73 5.89 -19.93 -0.12 -13.85 16 13 C -0.03 -1.63 9.52 22.25 0.21 -1.42 16 14 C -0.25 -12.78 9.73 22.47 0.22 -12.56 16 15 C 0.10 5.32 5.57 -21.28 -0.12 5.21 16 16 C -0.47 -24.09 9.04 23.46 0.21 -23.88 16 17 H 0.09 4.17 7.91 -2.91 -0.02 4.14 16 18 C 0.04 1.75 5.14 85.35 0.44 2.18 16 19 N -0.80 -38.31 10.95 21.87 0.24 -38.07 16 20 Si 0.99 34.94 29.60 68.60 2.03 36.97 16 21 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 22 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 23 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 24 C -0.20 -9.92 8.63 22.47 0.19 -9.73 16 25 C -0.05 -2.39 9.47 22.25 0.21 -2.18 16 26 C -0.15 -2.90 7.46 31.12 0.23 -2.67 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.11 1.49 8.10 -2.38 -0.02 1.47 16 32 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.06 1.69 7.84 -2.39 -0.02 1.67 16 34 H 0.41 12.02 6.47 -92.71 -0.60 11.42 16 35 H 0.10 4.89 7.63 -2.91 -0.02 4.87 16 36 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 37 H 0.30 12.65 8.29 -92.70 -0.77 11.88 16 38 H 0.11 5.75 6.16 -2.91 -0.02 5.74 16 39 H 0.12 4.48 6.37 -2.91 -0.02 4.46 16 40 H 0.10 1.72 7.90 -2.39 -0.02 1.70 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -63.05 344.06 2.68 -60.37 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: 0.43 Total: 37.18 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 4.19 Total: -31.02 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -2.33 Total: -64.65 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.65 Total: -38.84 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 2.03 Total: 36.97 kcal Total: -63.05 2.68 -60.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881576116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.476 kcal (2) G-P(sol) polarization free energy of solvation -63.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds