Wall clock time and date at job start Tue Mar 31 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99734 * 2 1 4 4 O 1.20819 * 120.00449 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99668 * 180.27215 * 3 2 1 6 6 H 1.09003 * 110.67384 * 56.48894 * 5 3 2 7 7 C 1.54886 * 110.75857 * 293.05151 * 5 3 2 8 8 C 1.54264 * 104.19751 * 203.74077 * 7 5 3 9 9 C 1.53874 * 106.59797 * 23.61364 * 8 7 5 10 10 H 1.09002 * 110.07004 * 240.69252 * 9 8 7 11 11 N 1.46494 * 110.03641 * 119.28534 * 9 8 7 12 12 C 1.38856 * 120.00227 * 87.83009 * 11 9 8 13 13 C 1.39560 * 119.84523 * 359.72766 * 12 11 9 14 14 C 1.36334 * 120.16433 * 179.71647 * 13 12 11 15 15 C 1.40884 * 119.83514 * 0.55449 * 14 13 12 16 16 C 1.41139 * 120.15551 * 179.69518 * 15 14 13 17 17 H 1.08010 * 119.99967 * 204.62984 * 16 15 14 18 18 C 1.39864 * 119.99936 * 24.63436 * 16 15 14 19 19 N 1.30897 * 120.00189 * 17.94975 * 18 16 15 20 20 Si 1.86803 * 119.99833 * 197.95053 * 18 16 15 21 21 H 1.48503 * 109.46980 * 60.00194 * 20 18 16 22 22 H 1.48500 * 109.46803 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46959 * 299.99976 * 20 18 16 24 24 C 1.40886 * 119.68960 * 359.72341 * 15 14 13 25 25 C 1.36338 * 119.83472 * 359.97438 * 24 15 14 26 26 C 1.54263 * 106.60053 * 359.97438 * 9 8 7 27 27 H 1.09002 * 109.46937 * 59.99907 * 1 2 3 28 28 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47377 * 300.00730 * 1 2 3 30 30 H 1.09001 * 110.48581 * 322.42223 * 7 5 3 31 31 H 1.08998 * 110.48598 * 85.06455 * 7 5 3 32 32 H 1.08997 * 110.03472 * 264.32150 * 8 7 5 33 33 H 1.09005 * 110.03320 * 142.89240 * 8 7 5 34 34 H 0.97003 * 120.00004 * 267.83337 * 11 9 8 35 35 H 1.08002 * 119.91502 * 359.97438 * 13 12 11 36 36 H 1.08000 * 120.08803 * 180.27397 * 14 13 12 37 37 H 0.97000 * 120.00191 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.08520 * 179.97438 * 24 15 14 39 39 H 1.07997 * 119.91962 * 179.97438 * 25 24 15 40 40 H 1.09000 * 110.48849 * 217.71847 * 26 9 8 41 41 H 1.09004 * 110.48793 * 95.07158 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0062 6 1 3.9764 0.7346 -0.8594 7 6 4.1498 0.7344 1.3228 8 6 5.5308 1.4128 1.4333 9 6 5.4601 2.6944 0.5846 10 1 6.1995 2.6546 -0.2153 11 7 5.6967 3.8686 1.4280 12 6 6.9925 4.3180 1.6450 13 6 8.0676 3.6452 1.0625 14 6 9.3421 4.0842 1.2664 15 6 9.5733 5.2131 2.0770 16 6 10.8905 5.6695 2.2979 17 1 11.1222 6.2419 3.1841 18 6 11.8956 5.3807 1.3692 19 7 11.5778 5.0097 0.1548 20 14 13.6917 5.5246 1.8619 21 1 13.9707 4.6015 2.9912 22 1 14.5523 5.1661 0.7060 23 1 13.9800 6.9200 2.2803 24 6 8.4836 5.8838 2.6665 25 6 7.2140 5.4373 2.4488 26 6 4.0388 2.7497 -0.0125 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.5159 1.0206 2.1621 31 1 4.2595 -0.3491 1.2786 32 1 6.3044 0.7502 1.0454 33 1 5.7411 1.6646 2.4728 34 1 4.9481 4.3322 1.8350 35 1 7.8891 2.7770 0.4453 36 1 10.1728 3.5652 0.8115 37 1 12.2749 4.8097 -0.4893 38 1 8.6535 6.7496 3.2893 39 1 6.3777 5.9502 2.9003 40 1 4.0677 3.1371 -1.0309 41 1 3.3866 3.3614 0.6110 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894460667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:27 Heat of formation + Delta-G solvation = -71.952231 kcal Electronic energy + Delta-G solvation = -22158.717922 eV Core-core repulsion = 18809.753357 eV Total energy + Delta-G solvation = -3348.964565 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.83776 -38.71001 -37.33217 -36.51580 -34.29894 -32.61716 -29.66296 -29.38112 -28.98485 -28.00952 -26.83212 -24.14188 -22.87356 -21.24188 -20.69440 -20.08698 -19.37305 -17.82610 -17.19376 -16.96303 -16.60172 -16.27844 -15.41079 -15.01056 -14.87996 -14.05593 -13.75348 -13.63388 -13.22501 -12.89208 -12.69461 -12.49725 -12.35543 -12.16924 -11.83573 -11.77402 -11.50984 -11.32278 -11.07721 -11.05478 -10.99451 -10.91918 -10.76090 -10.56046 -10.42690 -10.42589 -9.69260 -9.25807 -9.18896 -8.52957 -7.47187 -6.62524 -6.36961 -4.01541 1.99459 2.47461 2.94425 3.12213 3.15176 3.18506 3.37494 4.06568 4.18589 4.36753 4.44058 4.77993 4.78800 4.80953 4.88435 4.95860 5.23070 5.33038 5.34237 5.46205 5.47623 5.62169 5.77965 5.85098 6.01256 6.11503 6.14878 6.25743 6.29255 6.36170 6.43976 6.95430 6.98144 7.22164 7.37639 7.53229 7.58801 7.71103 7.86487 8.16921 8.31905 8.52292 8.72448 8.82232 9.07858 9.17318 10.38971 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.043316 B = 0.002771 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.257851 B =10100.899810 C =10382.587162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.469 3.531 4 O -0.506 6.506 5 C -0.088 4.088 6 H 0.116 0.884 7 C -0.107 4.107 8 C -0.142 4.142 9 C 0.161 3.839 10 H 0.081 0.919 11 N -0.754 5.754 12 C 0.092 3.908 13 C -0.163 4.163 14 C -0.125 4.125 15 C 0.074 3.926 16 C -0.467 4.467 17 H 0.072 0.928 18 C 0.075 3.925 19 N -0.808 5.808 20 Si 0.903 3.097 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.268 1.268 24 C -0.187 4.187 25 C -0.159 4.159 26 C -0.113 4.113 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.384 0.616 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.276 0.724 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.417 -10.879 -1.569 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.312 3.688 4 O -0.393 6.393 5 C -0.108 4.108 6 H 0.134 0.866 7 C -0.144 4.144 8 C -0.181 4.181 9 C 0.053 3.947 10 H 0.099 0.901 11 N -0.388 5.388 12 C -0.005 4.005 13 C -0.185 4.185 14 C -0.145 4.145 15 C 0.071 3.929 16 C -0.498 4.498 17 H 0.090 0.910 18 C -0.140 4.140 19 N -0.435 5.435 20 Si 0.728 3.272 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.208 4.208 25 C -0.181 4.181 26 C -0.151 4.151 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.217 0.783 35 H 0.107 0.893 36 H 0.136 0.864 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.458 -10.760 -1.910 18.931 hybrid contribution 0.284 0.307 0.202 0.465 sum -15.174 -10.453 -1.708 18.505 Atomic orbital electron populations 1.23259 0.76580 1.03609 1.02528 1.86529 1.23254 1.33667 1.84112 1.23793 0.92016 0.81171 0.71814 1.90666 1.67170 1.36392 1.45102 1.22063 0.86377 1.00196 1.02156 0.86616 1.22310 0.97180 1.00550 0.94404 1.22807 0.95527 0.97362 1.02424 1.21190 0.94917 0.85866 0.92704 0.90106 1.44016 1.05051 1.32416 1.57315 1.17341 0.83794 0.97309 1.02025 1.20105 0.92774 1.01256 1.04363 1.20934 0.94848 0.96994 1.01716 1.17493 0.92500 0.90912 0.91967 1.19334 0.92907 1.31429 1.06175 0.91028 1.25788 1.01057 0.93162 0.94035 1.69844 1.35187 1.35505 1.02984 0.86470 0.82233 0.79583 0.78931 1.19105 1.20607 1.19289 1.20543 0.92035 1.01111 1.07074 1.19811 0.96385 0.98253 1.03624 1.22592 0.96710 0.93189 1.02652 0.91952 0.88140 0.91945 0.91390 0.90510 0.91219 0.90279 0.78315 0.89298 0.86423 0.91294 0.89126 0.89655 0.90466 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.63 10.57 -39.25 -0.41 -4.05 16 3 C 0.47 5.42 7.26 36.01 0.26 5.69 16 4 O -0.51 -7.22 15.47 -18.74 -0.29 -7.51 16 5 C -0.09 -0.91 3.40 -89.79 -0.31 -1.21 16 6 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 7 C -0.11 -1.07 6.26 -25.08 -0.16 -1.23 16 8 C -0.14 -1.76 6.60 -25.61 -0.17 -1.93 16 9 C 0.16 2.26 2.91 -66.82 -0.19 2.06 16 10 H 0.08 1.23 6.41 -51.93 -0.33 0.90 16 11 N -0.75 -12.76 5.13 -50.96 -0.26 -13.02 16 12 C 0.09 1.96 6.67 -83.69 -0.56 1.41 16 13 C -0.16 -3.73 9.13 -39.77 -0.36 -4.10 16 14 C -0.12 -3.25 8.64 -39.27 -0.34 -3.59 16 15 C 0.07 2.01 5.57 -106.79 -0.60 1.41 16 16 C -0.47 -12.72 9.03 -37.87 -0.34 -13.06 16 17 H 0.07 1.88 7.91 -52.48 -0.41 1.47 16 18 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 19 N -0.81 -21.44 10.96 55.54 0.61 -20.83 16 20 Si 0.90 19.27 29.60 -169.99 -5.03 14.24 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 C -0.19 -4.66 9.74 -39.26 -0.38 -5.04 16 25 C -0.16 -3.56 9.82 -39.77 -0.39 -3.95 16 26 C -0.11 -1.37 5.60 -25.08 -0.14 -1.51 16 27 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 34 H 0.38 5.99 8.36 -40.82 -0.34 5.65 16 35 H 0.09 1.83 6.19 -52.49 -0.33 1.50 16 36 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 37 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 38 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 39 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.10 7.03 -51.93 -0.37 0.73 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -29.79 338.78 -8.85 -38.64 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.87 Total: 9.32 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -2.70 Total: -21.90 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.35 Total: -33.85 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.70 Total: -11.56 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.79 -8.85 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894460667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.312 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds