Wall clock time and date at job start Tue Mar 31 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99734 * 2 1 4 4 O 1.20819 * 120.00449 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99668 * 180.27215 * 3 2 1 6 6 H 1.09003 * 110.67384 * 56.48894 * 5 3 2 7 7 C 1.54886 * 110.75857 * 293.05151 * 5 3 2 8 8 C 1.54264 * 104.19751 * 203.74077 * 7 5 3 9 9 C 1.53874 * 106.59797 * 23.61364 * 8 7 5 10 10 H 1.09002 * 110.07004 * 240.69252 * 9 8 7 11 11 N 1.46494 * 110.03641 * 119.28534 * 9 8 7 12 12 C 1.38856 * 120.00227 * 87.83009 * 11 9 8 13 13 C 1.39560 * 119.84523 * 359.72766 * 12 11 9 14 14 C 1.36334 * 120.16433 * 179.71647 * 13 12 11 15 15 C 1.40884 * 119.83514 * 0.55449 * 14 13 12 16 16 C 1.41139 * 120.15551 * 179.69518 * 15 14 13 17 17 H 1.08010 * 119.99967 * 204.62984 * 16 15 14 18 18 C 1.39864 * 119.99936 * 24.63436 * 16 15 14 19 19 N 1.30897 * 120.00189 * 17.94975 * 18 16 15 20 20 Si 1.86803 * 119.99833 * 197.95053 * 18 16 15 21 21 H 1.48503 * 109.46980 * 60.00194 * 20 18 16 22 22 H 1.48500 * 109.46803 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46959 * 299.99976 * 20 18 16 24 24 C 1.40886 * 119.68960 * 359.72341 * 15 14 13 25 25 C 1.36338 * 119.83472 * 359.97438 * 24 15 14 26 26 C 1.54263 * 106.60053 * 359.97438 * 9 8 7 27 27 H 1.09002 * 109.46937 * 59.99907 * 1 2 3 28 28 H 1.08998 * 109.47209 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47377 * 300.00730 * 1 2 3 30 30 H 1.09001 * 110.48581 * 322.42223 * 7 5 3 31 31 H 1.08998 * 110.48598 * 85.06455 * 7 5 3 32 32 H 1.08997 * 110.03472 * 264.32150 * 8 7 5 33 33 H 1.09005 * 110.03320 * 142.89240 * 8 7 5 34 34 H 0.97003 * 120.00004 * 267.83337 * 11 9 8 35 35 H 1.08002 * 119.91502 * 359.97438 * 13 12 11 36 36 H 1.08000 * 120.08803 * 180.27397 * 14 13 12 37 37 H 0.97000 * 120.00191 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.08520 * 179.97438 * 24 15 14 39 39 H 1.07997 * 119.91962 * 179.97438 * 25 24 15 40 40 H 1.09000 * 110.48849 * 217.71847 * 26 9 8 41 41 H 1.09004 * 110.48793 * 95.07158 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0062 6 1 3.9764 0.7346 -0.8594 7 6 4.1498 0.7344 1.3228 8 6 5.5308 1.4128 1.4333 9 6 5.4601 2.6944 0.5846 10 1 6.1995 2.6546 -0.2153 11 7 5.6967 3.8686 1.4280 12 6 6.9925 4.3180 1.6450 13 6 8.0676 3.6452 1.0625 14 6 9.3421 4.0842 1.2664 15 6 9.5733 5.2131 2.0770 16 6 10.8905 5.6695 2.2979 17 1 11.1222 6.2419 3.1841 18 6 11.8956 5.3807 1.3692 19 7 11.5778 5.0097 0.1548 20 14 13.6917 5.5246 1.8619 21 1 13.9707 4.6015 2.9912 22 1 14.5523 5.1661 0.7060 23 1 13.9800 6.9200 2.2803 24 6 8.4836 5.8838 2.6665 25 6 7.2140 5.4373 2.4488 26 6 4.0388 2.7497 -0.0125 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.5159 1.0206 2.1621 31 1 4.2595 -0.3491 1.2786 32 1 6.3044 0.7502 1.0454 33 1 5.7411 1.6646 2.4728 34 1 4.9481 4.3322 1.8350 35 1 7.8891 2.7770 0.4453 36 1 10.1728 3.5652 0.8115 37 1 12.2749 4.8097 -0.4893 38 1 8.6535 6.7496 3.2893 39 1 6.3777 5.9502 2.9003 40 1 4.0677 3.1371 -1.0309 41 1 3.3866 3.3614 0.6110 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894460667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:26 Heat of formation + Delta-G solvation = -87.655121 kcal Electronic energy + Delta-G solvation = -22159.398851 eV Core-core repulsion = 18809.753357 eV Total energy + Delta-G solvation = -3349.645493 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.71988 -40.08459 -38.75875 -37.46073 -35.95404 -34.28321 -31.34975 -30.92718 -30.11257 -29.07461 -27.92189 -25.91618 -23.89968 -22.86358 -22.27224 -21.05933 -20.69649 -19.13155 -18.72652 -17.97477 -17.70394 -17.42527 -16.80246 -16.46657 -16.16667 -15.61668 -14.86832 -14.69495 -14.52452 -14.28478 -14.07383 -13.87872 -13.83898 -13.48632 -13.22984 -13.00635 -12.88170 -12.72119 -12.49007 -12.35713 -12.19598 -12.15640 -11.91708 -11.78828 -11.59315 -11.55753 -11.37009 -11.10503 -11.00039 -10.26699 -9.36932 -8.52737 -8.12872 -5.98092 1.11935 1.14118 1.21954 1.41150 1.51857 1.61700 1.71781 2.28841 2.86170 2.91525 3.40014 3.53847 3.88799 3.90628 4.10302 4.30674 4.31564 4.34278 4.39756 4.46000 4.49860 4.54052 4.56202 4.65906 4.71752 4.90569 5.06183 5.09342 5.12764 5.19928 5.26862 5.30855 5.35533 5.40272 5.48608 5.74707 5.84217 5.99788 6.21492 6.43192 6.68851 6.71078 6.91755 7.10984 7.17682 7.33815 8.50229 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.043316 B = 0.002771 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.257851 B =10100.899810 C =10382.587162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.539 6.539 5 C -0.082 4.082 6 H 0.141 0.859 7 C -0.096 4.096 8 C -0.137 4.137 9 C 0.154 3.846 10 H 0.072 0.928 11 N -0.745 5.745 12 C 0.116 3.884 13 C -0.170 4.170 14 C -0.143 4.143 15 C 0.034 3.966 16 C -0.507 4.507 17 H 0.066 0.934 18 C 0.032 3.968 19 N -0.841 5.841 20 Si 0.975 3.025 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.263 1.263 24 C -0.198 4.198 25 C -0.169 4.169 26 C -0.107 4.107 27 H 0.061 0.939 28 H 0.132 0.868 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.393 0.607 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.282 0.718 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.713 -12.469 -1.810 20.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.317 3.683 4 O -0.429 6.429 5 C -0.101 4.101 6 H 0.159 0.841 7 C -0.134 4.134 8 C -0.176 4.176 9 C 0.048 3.952 10 H 0.090 0.910 11 N -0.379 5.379 12 C 0.016 3.984 13 C -0.192 4.192 14 C -0.163 4.163 15 C 0.031 3.969 16 C -0.538 4.538 17 H 0.084 0.916 18 C -0.180 4.180 19 N -0.469 5.469 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.194 1.194 23 H -0.188 1.188 24 C -0.218 4.218 25 C -0.191 4.191 26 C -0.145 4.145 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.810 -12.382 -2.154 20.989 hybrid contribution 0.424 0.741 0.262 0.893 sum -16.386 -11.641 -1.892 20.189 Atomic orbital electron populations 1.23548 0.75003 1.05715 1.02395 1.86516 1.24806 1.32686 1.83557 1.23938 0.92349 0.81109 0.70897 1.90661 1.67931 1.37493 1.46780 1.22055 0.85861 0.98959 1.03250 0.84147 1.22243 0.95325 1.01678 0.94128 1.22695 0.97407 0.96673 1.00851 1.21396 0.95994 0.85425 0.92381 0.90989 1.44104 1.03555 1.33099 1.57141 1.17425 0.85302 0.95941 0.99683 1.20272 0.92080 1.02107 1.04746 1.20883 0.95684 0.97271 1.02467 1.17823 0.93331 0.92108 0.93667 1.19552 0.94169 1.33261 1.06813 0.91611 1.26591 1.05281 0.92487 0.93638 1.69906 1.36710 1.36446 1.03842 0.85364 0.76547 0.79623 0.78757 1.18770 1.19417 1.18798 1.20734 0.92759 1.01274 1.07045 1.20093 0.96341 0.98787 1.03861 1.22470 0.95002 0.94668 1.02363 0.92032 0.84966 0.92211 0.91676 0.88205 0.90425 0.92012 0.77224 0.87133 0.88219 0.90756 0.88841 0.86868 0.90143 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -6.29 10.57 -51.40 -0.54 -6.83 16 3 C 0.47 9.83 7.26 71.24 0.52 10.35 16 4 O -0.54 -14.58 15.47 21.98 0.34 -14.24 16 5 C -0.08 -1.44 3.40 -10.26 -0.03 -1.48 16 6 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 7 C -0.10 -1.64 6.26 31.67 0.20 -1.44 16 8 C -0.14 -3.08 6.60 31.32 0.21 -2.88 16 9 C 0.15 4.02 2.91 45.72 0.13 4.15 16 10 H 0.07 2.05 6.41 -2.39 -0.02 2.03 16 11 N -0.75 -23.91 5.13 -315.13 -1.62 -25.53 16 12 C 0.12 4.83 6.67 38.67 0.26 5.09 16 13 C -0.17 -7.76 9.13 22.14 0.20 -7.56 16 14 C -0.14 -7.66 8.64 22.47 0.19 -7.46 16 15 C 0.03 1.88 5.57 -21.27 -0.12 1.76 16 16 C -0.51 -28.70 9.03 23.38 0.21 -28.49 16 17 H 0.07 3.62 7.91 -2.91 -0.02 3.60 16 18 C 0.03 1.69 5.13 85.23 0.44 2.13 16 19 N -0.84 -45.95 10.96 21.81 0.24 -45.71 16 20 Si 0.98 40.29 29.60 68.60 2.03 42.32 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 22 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 C -0.20 -10.04 9.74 22.47 0.22 -9.82 16 25 C -0.17 -7.45 9.82 22.15 0.22 -7.23 16 26 C -0.11 -2.35 5.60 31.66 0.18 -2.17 16 27 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 28 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.06 1.18 8.04 -2.39 -0.02 1.16 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.63 7.92 -2.38 -0.02 1.62 16 34 H 0.39 11.44 8.36 -92.71 -0.77 10.67 16 35 H 0.11 4.46 6.19 -2.91 -0.02 4.44 16 36 H 0.10 5.61 6.16 -2.91 -0.02 5.59 16 37 H 0.28 14.05 8.30 -92.71 -0.77 13.28 16 38 H 0.09 4.53 8.06 -2.91 -0.02 4.50 16 39 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 1.81 7.03 -2.38 -0.02 1.80 16 Total: -1.00 -66.22 338.78 4.73 -61.49 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.26 Total: 32.04 kcal Atomic # 6 Polarization: -47.55 SS G_CDS: 4.01 Total: -43.53 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.38 Total: -71.24 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.20 Total: -21.07 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -66.22 4.73 -61.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894460667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.169 kcal (2) G-P(sol) polarization free energy of solvation -66.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds