Wall clock time and date at job start Tue Mar 31 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47355 * 80.77080 * 3 2 1 5 5 C 1.36938 * 120.00092 * 264.64077 * 4 3 2 6 6 H 1.08000 * 119.99874 * 196.37892 * 5 4 3 7 7 C 1.38814 * 119.99655 * 16.37513 * 5 4 3 8 8 N 1.31617 * 120.00165 * 22.67140 * 7 5 4 9 9 Si 1.86800 * 120.00027 * 202.66008 * 7 5 4 10 10 H 1.48496 * 109.47109 * 60.00271 * 9 7 5 11 11 H 1.48500 * 109.47327 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47251 * 300.00839 * 9 7 5 13 13 C 1.46503 * 120.00320 * 84.63876 * 4 3 2 14 14 C 1.50699 * 109.47056 * 270.00235 * 13 4 3 15 15 C 1.38281 * 119.97375 * 270.02082 * 14 13 4 16 16 C 1.38250 * 120.11577 * 180.02562 * 15 14 13 17 17 C 1.38169 * 120.05164 * 359.67934 * 16 15 14 18 18 C 1.38711 * 119.94389 * 0.56967 * 17 16 15 19 19 O 1.35901 * 120.05677 * 179.71989 * 18 17 16 20 20 C 1.42902 * 116.99698 * 359.73375 * 19 18 17 21 21 C 1.52999 * 109.46684 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.47431 * 65.00034 * 21 20 19 23 23 C 1.42899 * 114.00152 * 180.02562 * 22 21 20 24 24 C 1.38130 * 119.97303 * 89.99945 * 14 13 4 25 25 H 4.40633 * 5.51438 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47648 * 320.76332 * 3 2 1 27 27 H 1.09004 * 109.46810 * 200.76815 * 3 2 1 28 28 H 0.96997 * 119.99867 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47303 * 150.00284 * 13 4 3 30 30 H 1.09003 * 109.46831 * 29.99819 * 13 4 3 31 31 H 1.08004 * 119.94475 * 0.02562 * 15 14 13 32 32 H 1.07993 * 119.97521 * 179.97438 * 16 15 14 33 33 H 1.07995 * 120.02573 * 180.29968 * 17 16 15 34 34 H 1.08997 * 109.47038 * 59.99406 * 20 19 18 35 35 H 1.08999 * 109.46801 * 299.99532 * 20 19 18 36 36 H 1.09003 * 109.47140 * 185.00014 * 21 20 19 37 37 H 1.08994 * 109.47491 * 304.99692 * 21 20 19 38 38 H 1.09002 * 109.46626 * 299.99685 * 23 22 21 39 39 H 1.08996 * 109.47339 * 59.99676 * 23 22 21 40 40 H 1.08993 * 109.46981 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.02332 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2206 -1.3633 5 6 3.4677 -1.4835 -1.7747 6 1 4.0661 -1.6218 -2.6630 7 6 3.0364 -2.5860 -1.0497 8 7 1.9824 -2.4880 -0.2675 9 14 3.9518 -4.2088 -1.1845 10 1 5.3589 -4.0210 -0.7488 11 1 3.2956 -5.2207 -0.3181 12 1 3.9283 -4.6747 -2.5944 13 6 3.2664 0.9091 -2.2866 14 6 1.9781 1.0892 -3.0474 15 6 1.7861 0.4291 -4.2472 16 6 0.6056 0.5927 -4.9478 17 6 -0.3885 1.4114 -4.4470 18 6 -0.1963 2.0787 -3.2463 19 8 -1.1702 2.8890 -2.7545 20 6 -2.3645 3.0120 -3.5295 21 6 -3.3369 3.9574 -2.8213 22 8 -2.7773 5.2716 -2.7781 23 6 -3.6102 6.2371 -2.1331 24 6 0.9896 1.9133 -2.5453 25 1 -1.0499 -0.0002 -0.0001 26 1 3.0098 -0.7951 0.6500 27 1 3.0088 0.9618 0.3644 28 1 1.6809 -3.2585 0.2387 29 1 4.0777 0.7127 -2.9875 30 1 3.4850 1.8158 -1.7224 31 1 2.5598 -0.2153 -4.6377 32 1 0.4582 0.0764 -5.8848 33 1 -1.3124 1.5350 -4.9923 34 1 -2.8277 2.0316 -3.6411 35 1 -2.1196 3.4122 -4.5133 36 1 -4.2809 3.9822 -3.3657 37 1 -3.5126 3.6038 -1.8054 38 1 -4.5601 6.3092 -2.6628 39 1 -3.7911 5.9305 -1.1029 40 1 -3.1149 7.2080 -2.1420 41 1 1.1401 2.4287 -1.6082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897163644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:56 Heat of formation + Delta-G solvation = 30.034220 kcal Electronic energy + Delta-G solvation = -22790.504103 eV Core-core repulsion = 19445.962002 eV Total energy + Delta-G solvation = -3344.542101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.69445 -38.11756 -37.12759 -35.62626 -31.91198 -31.47205 -31.07563 -29.89857 -28.81669 -26.53317 -26.15887 -25.57751 -23.25817 -21.93637 -21.71075 -20.08995 -17.51998 -17.36258 -16.91279 -16.33311 -16.07315 -15.65423 -15.29081 -15.03409 -14.89738 -14.59269 -13.86903 -13.71875 -13.26384 -13.09494 -12.85324 -12.57317 -12.33591 -12.08927 -11.62079 -11.50712 -11.41630 -11.20087 -11.00552 -10.81500 -10.66800 -10.53922 -10.29388 -10.23348 -9.92796 -9.87175 -8.88647 -8.75451 -8.37697 -8.02536 -7.56655 -7.01098 -5.77568 -3.16403 2.00448 2.14368 3.38502 3.45348 3.45520 3.46398 3.56963 4.24777 4.49051 4.50584 4.61049 4.78337 4.97851 5.07853 5.13818 5.19496 5.28708 5.35098 5.38428 5.45178 5.48705 5.55092 5.76080 5.80229 5.93794 6.01183 6.07634 6.20417 6.37695 6.56187 6.73418 6.76592 6.90935 6.93423 7.06815 7.26820 7.36712 7.46832 7.52476 7.75737 7.94969 8.28286 9.11323 9.33074 9.77006 10.23135 11.25180 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023440 B = 0.004037 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.232013 B = 6933.493090 C = 7353.700535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.095 4.095 3 C 0.267 3.733 4 N -0.574 5.574 5 C -0.263 4.263 6 H 0.076 0.924 7 C 0.005 3.995 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.176 3.824 14 C -0.044 4.044 15 C -0.136 4.136 16 C -0.090 4.090 17 C -0.227 4.227 18 C 0.122 3.878 19 O -0.310 6.310 20 C 0.064 3.936 21 C 0.063 3.937 22 O -0.383 6.383 23 C 0.031 3.969 24 C -0.130 4.130 25 H 0.184 0.816 26 H 0.096 0.904 27 H 0.037 0.963 28 H 0.255 0.745 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.039 0.961 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 12.420 -5.265 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.098 4.098 3 C 0.142 3.858 4 N -0.292 5.292 5 C -0.392 4.392 6 H 0.094 0.906 7 C -0.195 4.195 8 N -0.525 5.525 9 Si 0.730 3.270 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.210 1.210 13 C 0.049 3.951 14 C -0.047 4.047 15 C -0.155 4.155 16 C -0.108 4.108 17 C -0.246 4.246 18 C 0.078 3.922 19 O -0.224 6.224 20 C -0.012 4.012 21 C -0.013 4.013 22 O -0.302 6.302 23 C -0.066 4.066 24 C -0.149 4.149 25 H 0.201 0.799 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.129 12.409 -5.027 15.663 hybrid contribution -0.808 -1.388 -0.264 1.628 sum -8.937 11.021 -5.291 15.143 Atomic orbital electron populations 1.24008 0.95147 1.07945 1.04163 1.24098 0.95099 0.93902 0.96674 1.17867 0.83046 0.97904 0.86972 1.44423 1.73827 1.03816 1.07124 1.19200 1.26285 0.82144 1.11539 0.90586 1.24925 0.96355 0.97674 1.00560 1.70151 1.21195 1.29893 1.31292 0.86398 0.79694 0.83432 0.77459 1.20963 1.21785 1.21039 1.20083 0.91651 0.91307 0.92024 1.20888 0.98660 0.92054 0.93130 1.20856 0.97910 1.00908 0.95829 1.20774 0.93470 0.97354 0.99183 1.20933 1.01010 1.04671 0.97999 1.18905 0.88792 0.91453 0.93071 1.86100 1.24893 1.63418 1.47958 1.22694 0.85135 0.98249 0.95143 1.22587 0.94913 0.82985 1.00832 1.87983 1.44907 1.18026 1.79274 1.22744 0.94667 0.92765 0.96379 1.20154 0.91781 1.02713 1.00296 0.79863 0.88608 0.94518 0.93494 0.92032 0.92967 0.86535 0.86951 0.86864 0.90817 0.91576 0.91482 0.92030 0.94281 0.93922 0.89587 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.01 19.02 29.55 0.56 -6.45 16 2 C -0.09 -2.35 10.29 -37.12 -0.38 -2.73 16 3 C 0.27 6.36 5.45 -6.83 -0.04 6.32 16 4 N -0.57 -13.84 2.49 -177.95 -0.44 -14.28 16 5 C -0.26 -6.91 9.66 -15.06 -0.15 -7.06 16 6 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 7 C 0.00 0.12 4.84 -17.43 -0.08 0.04 16 8 N -0.88 -25.06 9.49 55.49 0.53 -24.53 16 9 Si 0.90 21.35 29.61 -169.99 -5.03 16.31 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.18 3.59 5.82 -5.19 -0.03 3.56 16 14 C -0.04 -0.89 5.22 -104.65 -0.55 -1.44 16 15 C -0.14 -2.67 9.70 -39.56 -0.38 -3.05 16 16 C -0.09 -1.58 10.04 -39.60 -0.40 -1.98 16 17 C -0.23 -3.91 9.04 -39.43 -0.36 -4.27 16 18 C 0.12 2.30 6.69 -39.22 -0.26 2.04 16 19 O -0.31 -5.41 10.10 -24.28 -0.25 -5.66 16 20 C 0.06 0.82 5.12 37.16 0.19 1.01 16 21 C 0.06 0.69 6.32 37.16 0.23 0.93 16 22 O -0.38 -4.86 10.67 -40.08 -0.43 -5.29 16 23 C 0.03 0.27 11.01 101.05 1.11 1.38 16 24 C -0.13 -2.62 8.34 -39.43 -0.33 -2.95 16 25 H 0.18 3.88 7.80 -54.10 -0.42 3.46 16 26 H 0.10 2.47 6.43 -51.93 -0.33 2.13 16 27 H 0.04 0.77 7.97 -51.93 -0.41 0.35 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.06 1.18 7.97 -51.93 -0.41 0.77 16 30 H 0.05 0.96 7.89 -51.93 -0.41 0.55 16 31 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 32 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.11 1.62 6.30 -52.49 -0.33 1.29 16 34 H 0.07 0.85 7.65 -51.93 -0.40 0.45 16 35 H 0.07 0.80 7.67 -51.93 -0.40 0.40 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 351.02 15.07 5.29 5.29 Total: -1.00 -31.67 351.02 -7.24 -38.91 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.05 Total: 3.91 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -0.86 Total: -14.66 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.08 Total: -38.81 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.67 Total: -10.95 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.67 -7.24 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897163644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.941 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds