Wall clock time and date at job start Tue Mar 31 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47355 * 80.77080 * 3 2 1 5 5 C 1.36938 * 120.00092 * 264.64077 * 4 3 2 6 6 H 1.08000 * 119.99874 * 196.37892 * 5 4 3 7 7 C 1.38814 * 119.99655 * 16.37513 * 5 4 3 8 8 N 1.31617 * 120.00165 * 22.67140 * 7 5 4 9 9 Si 1.86800 * 120.00027 * 202.66008 * 7 5 4 10 10 H 1.48496 * 109.47109 * 60.00271 * 9 7 5 11 11 H 1.48500 * 109.47327 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47251 * 300.00839 * 9 7 5 13 13 C 1.46503 * 120.00320 * 84.63876 * 4 3 2 14 14 C 1.50699 * 109.47056 * 270.00235 * 13 4 3 15 15 C 1.38281 * 119.97375 * 270.02082 * 14 13 4 16 16 C 1.38250 * 120.11577 * 180.02562 * 15 14 13 17 17 C 1.38169 * 120.05164 * 359.67934 * 16 15 14 18 18 C 1.38711 * 119.94389 * 0.56967 * 17 16 15 19 19 O 1.35901 * 120.05677 * 179.71989 * 18 17 16 20 20 C 1.42902 * 116.99698 * 359.73375 * 19 18 17 21 21 C 1.52999 * 109.46684 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.47431 * 65.00034 * 21 20 19 23 23 C 1.42899 * 114.00152 * 180.02562 * 22 21 20 24 24 C 1.38130 * 119.97303 * 89.99945 * 14 13 4 25 25 H 4.40633 * 5.51438 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47648 * 320.76332 * 3 2 1 27 27 H 1.09004 * 109.46810 * 200.76815 * 3 2 1 28 28 H 0.96997 * 119.99867 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47303 * 150.00284 * 13 4 3 30 30 H 1.09003 * 109.46831 * 29.99819 * 13 4 3 31 31 H 1.08004 * 119.94475 * 0.02562 * 15 14 13 32 32 H 1.07993 * 119.97521 * 179.97438 * 16 15 14 33 33 H 1.07995 * 120.02573 * 180.29968 * 17 16 15 34 34 H 1.08997 * 109.47038 * 59.99406 * 20 19 18 35 35 H 1.08999 * 109.46801 * 299.99532 * 20 19 18 36 36 H 1.09003 * 109.47140 * 185.00014 * 21 20 19 37 37 H 1.08994 * 109.47491 * 304.99692 * 21 20 19 38 38 H 1.09002 * 109.46626 * 299.99685 * 23 22 21 39 39 H 1.08996 * 109.47339 * 59.99676 * 23 22 21 40 40 H 1.08993 * 109.46981 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.02332 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2206 -1.3633 5 6 3.4677 -1.4835 -1.7747 6 1 4.0661 -1.6218 -2.6630 7 6 3.0364 -2.5860 -1.0497 8 7 1.9824 -2.4880 -0.2675 9 14 3.9518 -4.2088 -1.1845 10 1 5.3589 -4.0210 -0.7488 11 1 3.2956 -5.2207 -0.3181 12 1 3.9283 -4.6747 -2.5944 13 6 3.2664 0.9091 -2.2866 14 6 1.9781 1.0892 -3.0474 15 6 1.7861 0.4291 -4.2472 16 6 0.6056 0.5927 -4.9478 17 6 -0.3885 1.4114 -4.4470 18 6 -0.1963 2.0787 -3.2463 19 8 -1.1702 2.8890 -2.7545 20 6 -2.3645 3.0120 -3.5295 21 6 -3.3369 3.9574 -2.8213 22 8 -2.7773 5.2716 -2.7781 23 6 -3.6102 6.2371 -2.1331 24 6 0.9896 1.9133 -2.5453 25 1 -1.0499 -0.0002 -0.0001 26 1 3.0098 -0.7951 0.6500 27 1 3.0088 0.9618 0.3644 28 1 1.6809 -3.2585 0.2387 29 1 4.0777 0.7127 -2.9875 30 1 3.4850 1.8158 -1.7224 31 1 2.5598 -0.2153 -4.6377 32 1 0.4582 0.0764 -5.8848 33 1 -1.3124 1.5350 -4.9923 34 1 -2.8277 2.0316 -3.6411 35 1 -2.1196 3.4122 -4.5133 36 1 -4.2809 3.9822 -3.3657 37 1 -3.5126 3.6038 -1.8054 38 1 -4.5601 6.3092 -2.6628 39 1 -3.7911 5.9305 -1.1029 40 1 -3.1149 7.2080 -2.1420 41 1 1.1401 2.4287 -1.6082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897163644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:55 Heat of formation + Delta-G solvation = 12.533587 kcal Electronic energy + Delta-G solvation = -22791.262987 eV Core-core repulsion = 19445.962002 eV Total energy + Delta-G solvation = -3345.300985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.01917 -39.21645 -38.38536 -37.30515 -33.69176 -33.32250 -32.20133 -31.51472 -30.12948 -27.99851 -27.47185 -27.11413 -24.45485 -23.40884 -23.27818 -21.50485 -19.29649 -18.79965 -18.20751 -17.79584 -17.22244 -16.84490 -16.77902 -16.43588 -16.09393 -15.72688 -15.57069 -15.39218 -15.00444 -14.65250 -14.12343 -13.86438 -13.52388 -13.34299 -13.29555 -13.02538 -12.66632 -12.61655 -12.50214 -12.32160 -12.26880 -12.20055 -11.83422 -11.72048 -11.62987 -10.74277 -10.70108 -10.66586 -10.26403 -9.56450 -9.02945 -8.89450 -7.79490 -5.19424 0.55576 0.68548 1.50137 1.53242 1.58967 2.30376 2.40522 2.58600 2.68019 2.80251 2.98994 3.33427 3.87849 3.96368 4.03669 4.10077 4.11037 4.16439 4.28641 4.35039 4.38769 4.51112 4.53481 4.54982 4.60820 4.68325 4.74486 4.85818 4.89702 4.96650 5.06605 5.26553 5.33122 5.47760 5.61899 5.66218 5.72271 5.91819 6.00938 6.19405 6.30854 6.61704 7.12333 7.44428 7.84526 8.27796 9.21596 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023440 B = 0.004037 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.232013 B = 6933.493090 C = 7353.700535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.114 4.114 3 C 0.268 3.732 4 N -0.586 5.586 5 C -0.264 4.264 6 H 0.079 0.921 7 C -0.044 4.044 8 N -0.911 5.911 9 Si 0.960 3.040 10 H -0.277 1.277 11 H -0.302 1.302 12 H -0.281 1.281 13 C 0.174 3.826 14 C -0.058 4.058 15 C -0.157 4.157 16 C -0.089 4.089 17 C -0.223 4.223 18 C 0.117 3.883 19 O -0.329 6.329 20 C 0.053 3.947 21 C 0.063 3.937 22 O -0.417 6.417 23 C 0.025 3.975 24 C -0.148 4.148 25 H 0.205 0.795 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.245 0.755 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.092 0.908 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 13.021 -6.781 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.117 4.117 3 C 0.143 3.857 4 N -0.304 5.304 5 C -0.393 4.393 6 H 0.097 0.903 7 C -0.241 4.241 8 N -0.556 5.556 9 Si 0.789 3.211 10 H -0.204 1.204 11 H -0.228 1.228 12 H -0.207 1.207 13 C 0.049 3.951 14 C -0.061 4.061 15 C -0.176 4.176 16 C -0.107 4.107 17 C -0.242 4.242 18 C 0.072 3.928 19 O -0.243 6.243 20 C -0.022 4.022 21 C -0.013 4.013 22 O -0.336 6.336 23 C -0.070 4.070 24 C -0.168 4.168 25 H 0.222 0.778 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.353 13.045 -6.568 17.343 hybrid contribution -0.509 -1.414 0.137 1.509 sum -9.862 11.632 -6.430 16.550 Atomic orbital electron populations 1.24605 0.95989 1.07506 1.03704 1.24448 0.95769 0.94335 0.97143 1.17824 0.82874 0.98212 0.86826 1.44480 1.74061 1.03969 1.07904 1.19471 1.25569 0.83185 1.11107 0.90343 1.25543 0.97145 1.00385 1.01012 1.70313 1.22676 1.29958 1.32651 0.85461 0.78612 0.79963 0.77069 1.20357 1.22827 1.20728 1.20190 0.92216 0.90739 0.91971 1.20826 0.98415 0.92941 0.93911 1.21030 0.99077 1.01345 0.96132 1.21146 0.92590 0.96946 0.99974 1.21308 1.02092 1.03394 0.97370 1.19028 0.88777 0.91566 0.93391 1.86089 1.25997 1.62965 1.49266 1.23083 0.83871 0.99825 0.95439 1.22704 0.95474 0.82068 1.01050 1.87928 1.46739 1.19085 1.79897 1.22925 0.95279 0.92241 0.96601 1.20152 0.92869 1.03411 1.00319 0.77760 0.91077 0.91921 0.94576 0.91118 0.91347 0.86582 0.83898 0.83540 0.89189 0.90690 0.87941 0.92400 0.92161 0.93649 0.88914 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -14.29 19.02 74.32 1.41 -12.88 16 2 C -0.11 -5.70 10.29 31.12 0.32 -5.38 16 3 C 0.27 12.90 5.45 84.57 0.46 13.36 16 4 N -0.59 -28.31 2.49 -716.91 -1.78 -30.09 16 5 C -0.26 -13.89 9.66 84.03 0.81 -13.08 16 6 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 7 C -0.04 -2.41 4.84 84.86 0.41 -2.00 16 8 N -0.91 -52.57 9.49 21.65 0.21 -52.37 16 9 Si 0.96 44.34 29.61 68.60 2.03 46.37 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.17 7.07 5.82 85.63 0.50 7.57 16 14 C -0.06 -2.35 5.22 -19.88 -0.10 -2.45 16 15 C -0.16 -6.00 9.70 22.28 0.22 -5.78 16 16 C -0.09 -2.93 10.04 22.26 0.22 -2.70 16 17 C -0.22 -7.12 9.04 22.37 0.20 -6.91 16 18 C 0.12 4.28 6.69 22.51 0.15 4.43 16 19 O -0.33 -11.08 10.10 -87.80 -0.89 -11.97 16 20 C 0.05 1.22 5.12 71.98 0.37 1.59 16 21 C 0.06 1.23 6.32 71.98 0.45 1.68 16 22 O -0.42 -9.88 10.67 -144.34 -1.54 -11.42 16 23 C 0.03 0.39 11.01 113.37 1.25 1.64 16 24 C -0.15 -5.95 8.34 22.37 0.19 -5.77 16 25 H 0.21 8.49 7.80 -4.42 -0.03 8.46 16 26 H 0.07 3.76 6.43 -2.39 -0.02 3.75 16 27 H 0.06 2.62 7.97 -2.39 -0.02 2.60 16 28 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.07 2.68 7.97 -2.39 -0.02 2.66 16 30 H 0.07 2.49 7.89 -2.39 -0.02 2.47 16 31 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 32 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 33 H 0.15 3.61 6.30 -2.91 -0.02 3.59 16 34 H 0.09 1.78 7.65 -2.39 -0.02 1.76 16 35 H 0.07 1.60 7.67 -2.39 -0.02 1.58 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -67.86 351.02 5.89 -61.98 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 1.00 Total: 24.18 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 6.86 Total: -26.68 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.58 Total: -82.46 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -2.43 Total: -23.39 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -67.86 5.89 -61.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897163644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.511 kcal (2) G-P(sol) polarization free energy of solvation -67.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds