Wall clock time and date at job start Tue Mar 31 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34715 * 117.00141 * 2 1 4 4 O 1.21471 * 120.00010 * 359.97438 * 3 2 1 5 5 C 1.47743 * 120.00040 * 179.97438 * 3 2 1 6 6 C 1.39666 * 120.03452 * 0.04315 * 5 3 2 7 7 C 1.37981 * 119.74256 * 180.10235 * 6 5 3 8 8 C 1.38105 * 120.28265 * 359.92243 * 7 6 5 9 9 C 1.39095 * 120.72348 * 359.85524 * 8 7 6 10 10 C 1.39145 * 119.24218 * 0.29558 * 9 8 7 11 11 N 1.40106 * 110.94210 * 180.48374 * 9 8 7 12 12 C 1.46898 * 111.00118 * 103.46218 * 11 9 8 13 13 C 1.52994 * 109.47101 * 170.14564 * 12 11 9 14 14 C 1.52995 * 109.47287 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47394 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99722 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00421 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99372 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00221 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46788 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47060 * 119.99637 * 19 17 15 22 22 H 1.48495 * 109.47185 * 240.00068 * 19 17 15 23 23 C 1.47893 * 107.88032 * 341.64534 * 11 9 8 24 24 C 1.51626 * 131.36947 * 179.60262 * 8 7 6 25 25 H 1.08999 * 109.47124 * 59.99988 * 1 2 3 26 26 H 1.08994 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47024 * 300.00261 * 1 2 3 28 28 H 1.08005 * 120.12785 * 0.10887 * 6 5 3 29 29 H 1.07992 * 119.85933 * 180.19681 * 7 6 5 30 30 H 1.07998 * 119.96380 * 179.75635 * 10 9 8 31 31 H 1.08996 * 109.47443 * 290.14865 * 12 11 9 32 32 H 1.09003 * 109.46695 * 50.14916 * 12 11 9 33 33 H 1.08999 * 109.47717 * 300.00417 * 13 12 11 34 34 H 1.09007 * 109.47020 * 60.00054 * 13 12 11 35 35 H 1.09003 * 109.46910 * 299.99919 * 14 13 12 36 36 H 1.08995 * 109.47616 * 60.00134 * 14 13 12 37 37 H 0.97005 * 119.99339 * 180.02562 * 18 17 15 38 38 H 1.08998 * 110.77817 * 269.02947 * 23 11 9 39 39 H 1.09003 * 110.93354 * 145.68146 * 23 11 9 40 40 H 1.09005 * 110.74196 * 314.62099 * 24 8 7 41 41 H 1.09000 * 110.74268 * 77.94498 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2191 -0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3004 0.1067 0.0002 7 6 5.6779 0.1859 0.0029 8 6 6.3047 1.4165 0.0043 9 6 5.5618 2.5924 0.0000 10 6 4.1723 2.5186 0.0006 11 7 6.4005 3.7147 -0.0086 12 6 6.4560 4.3202 -1.3458 13 6 7.1739 5.6689 -1.2655 14 6 7.2311 6.2998 -2.6581 15 6 7.9387 7.6280 -2.5792 16 1 8.3101 7.9865 -1.6304 17 6 8.1121 8.3857 -3.7181 18 7 7.6603 7.9489 -4.8734 19 14 8.9886 10.0324 -3.6201 20 1 9.3963 10.2932 -2.2162 21 1 10.1927 10.0047 -4.4887 22 1 8.0731 11.1084 -4.0772 23 6 7.7437 3.2811 0.4331 24 6 7.7735 1.7930 0.0151 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.8128 -0.8570 -0.0023 29 1 6.2685 -0.7182 -0.0006 30 1 3.5840 3.4243 0.0013 31 1 6.9988 3.6594 -2.0217 32 1 5.4429 4.4695 -1.7193 33 1 6.6312 6.3298 -0.5897 34 1 8.1870 5.5196 -0.8919 35 1 7.7737 5.6391 -3.3343 36 1 6.2180 6.4492 -3.0314 37 1 7.7826 8.4818 -5.6747 38 1 7.8466 3.3813 1.5135 39 1 8.5232 3.8429 -0.0817 40 1 8.3193 1.1975 0.7469 41 1 8.2083 1.6797 -0.9779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934167096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:48 Heat of formation + Delta-G solvation = -55.793894 kcal Electronic energy + Delta-G solvation = -22056.975571 eV Core-core repulsion = 18708.711684 eV Total energy + Delta-G solvation = -3348.263887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.07524 -40.27088 -37.14227 -36.49239 -34.13934 -32.57272 -31.43023 -29.95204 -29.17232 -27.73887 -26.28556 -24.12925 -23.17341 -22.47252 -21.15390 -20.63697 -19.76514 -17.89177 -17.23278 -16.55095 -16.38846 -16.15573 -15.72952 -15.46244 -14.68834 -14.43884 -14.20749 -13.84669 -13.68144 -13.55621 -13.44734 -12.73138 -12.41751 -12.36649 -12.26814 -12.13702 -11.71344 -11.57339 -11.19173 -11.07692 -11.03480 -10.88210 -10.70751 -10.63227 -10.53504 -9.76649 -9.59742 -9.28837 -9.06396 -9.02073 -8.35035 -7.89683 -5.99983 -4.02183 0.52253 1.20719 2.35579 2.42328 3.31481 3.38980 3.43208 3.54151 3.76697 4.37785 4.46869 4.51431 4.72227 4.82136 4.85395 4.93092 5.00660 5.07599 5.12014 5.25724 5.36059 5.42895 5.58697 5.61669 5.69730 5.71233 5.78589 5.95341 6.02648 6.12161 6.17682 6.20786 6.29337 6.46000 6.61456 6.73098 7.04289 7.15097 7.31713 7.55315 7.67308 7.80475 7.99880 8.42540 9.05040 9.61995 11.11486 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.003091 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.677622 B = 9055.055327 C =10033.483775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.502 6.502 5 C -0.114 4.114 6 C -0.080 4.080 7 C -0.104 4.104 8 C -0.105 4.105 9 C 0.092 3.908 10 C -0.050 4.050 11 N -0.492 5.492 12 C 0.058 3.942 13 C -0.105 4.105 14 C 0.022 3.978 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.047 3.953 24 C -0.115 4.115 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.140 0.860 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.014 0.986 36 H 0.017 0.983 37 H 0.260 0.740 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.139 -20.397 11.202 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.390 6.390 5 C -0.116 4.116 6 C -0.099 4.099 7 C -0.122 4.122 8 C -0.108 4.108 9 C -0.005 4.005 10 C -0.070 4.070 11 N -0.209 5.209 12 C -0.066 4.066 13 C -0.143 4.143 14 C -0.016 4.016 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.080 4.080 24 C -0.153 4.153 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.157 0.843 29 H 0.147 0.853 30 H 0.158 0.842 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.551 -19.586 11.338 23.858 hybrid contribution 0.481 0.416 -0.583 0.863 sum -7.070 -19.170 10.755 23.090 Atomic orbital electron populations 1.23285 0.75948 1.03704 1.02780 1.86529 1.23563 1.32670 1.84508 1.21174 0.89071 0.81414 0.72743 1.90859 1.66745 1.35973 1.45463 1.18686 0.88749 0.94415 1.09745 1.21260 0.93352 0.97697 0.97596 1.20354 0.93931 0.96540 1.01409 1.21450 0.96454 0.93884 0.99010 1.19526 0.92516 0.90034 0.98395 1.20516 0.92197 0.97171 0.97135 1.60247 1.08342 1.24830 1.27442 1.22489 1.01904 0.97005 0.85243 1.21709 0.98320 0.92910 1.01361 1.19076 0.97263 0.95222 0.90040 1.21267 1.36617 1.03685 0.94077 0.92572 1.25034 0.95852 0.98150 0.95503 1.69980 1.46581 1.38146 0.98811 0.86537 0.79382 0.84014 0.78087 1.19712 1.21051 1.21006 1.23238 0.90269 0.92651 1.01848 1.21821 0.92228 0.98068 1.03158 0.91713 0.87980 0.91791 0.84342 0.85319 0.84183 0.94214 0.90767 0.92330 0.93183 0.96737 0.96504 0.93068 0.89467 0.88520 0.89302 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.77 9.81 -40.53 -0.40 -4.17 16 3 C 0.51 6.70 7.90 34.62 0.27 6.98 16 4 O -0.50 -7.92 16.12 -19.24 -0.31 -8.23 16 5 C -0.11 -1.46 5.86 -105.08 -0.62 -2.08 16 6 C -0.08 -0.84 9.62 -39.14 -0.38 -1.21 16 7 C -0.10 -1.06 10.01 -39.72 -0.40 -1.46 16 8 C -0.11 -1.28 6.23 -103.90 -0.65 -1.92 16 9 C 0.09 1.33 5.53 -83.42 -0.46 0.86 16 10 C -0.05 -0.72 9.62 -38.84 -0.37 -1.09 16 11 N -0.49 -7.58 5.04 -169.06 -0.85 -8.43 16 12 C 0.06 1.01 4.75 -3.83 -0.02 1.00 16 13 C -0.11 -2.15 5.19 -26.74 -0.14 -2.29 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 19 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.05 0.59 6.71 -2.44 -0.02 0.57 16 24 C -0.11 -1.22 6.92 -26.59 -0.18 -1.41 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.14 1.13 7.61 -52.48 -0.40 0.73 16 29 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.14 2.13 7.63 -52.49 -0.40 1.73 16 31 H 0.04 0.69 8.03 -51.93 -0.42 0.27 16 32 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.98 6.59 -51.93 -0.34 0.63 16 35 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 1.24 6.27 -51.93 -0.33 0.92 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -32.59 345.12 -9.15 -41.75 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -6.07 Total: -2.72 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -2.44 Total: -13.80 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.12 Total: -34.77 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.71 Total: -12.40 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.59 -9.15 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934167096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.046 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds