Wall clock time and date at job start Tue Mar 31 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34715 * 117.00141 * 2 1 4 4 O 1.21471 * 120.00010 * 359.97438 * 3 2 1 5 5 C 1.47743 * 120.00040 * 179.97438 * 3 2 1 6 6 C 1.39666 * 120.03452 * 0.04315 * 5 3 2 7 7 C 1.37981 * 119.74256 * 180.10235 * 6 5 3 8 8 C 1.38105 * 120.28265 * 359.92243 * 7 6 5 9 9 C 1.39095 * 120.72348 * 359.85524 * 8 7 6 10 10 C 1.39145 * 119.24218 * 0.29558 * 9 8 7 11 11 N 1.40106 * 110.94210 * 180.48374 * 9 8 7 12 12 C 1.46898 * 111.00118 * 103.46218 * 11 9 8 13 13 C 1.52994 * 109.47101 * 170.14564 * 12 11 9 14 14 C 1.52995 * 109.47287 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47394 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99722 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00421 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99372 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00221 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46788 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47060 * 119.99637 * 19 17 15 22 22 H 1.48495 * 109.47185 * 240.00068 * 19 17 15 23 23 C 1.47893 * 107.88032 * 341.64534 * 11 9 8 24 24 C 1.51626 * 131.36947 * 179.60262 * 8 7 6 25 25 H 1.08999 * 109.47124 * 59.99988 * 1 2 3 26 26 H 1.08994 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47024 * 300.00261 * 1 2 3 28 28 H 1.08005 * 120.12785 * 0.10887 * 6 5 3 29 29 H 1.07992 * 119.85933 * 180.19681 * 7 6 5 30 30 H 1.07998 * 119.96380 * 179.75635 * 10 9 8 31 31 H 1.08996 * 109.47443 * 290.14865 * 12 11 9 32 32 H 1.09003 * 109.46695 * 50.14916 * 12 11 9 33 33 H 1.08999 * 109.47717 * 300.00417 * 13 12 11 34 34 H 1.09007 * 109.47020 * 60.00054 * 13 12 11 35 35 H 1.09003 * 109.46910 * 299.99919 * 14 13 12 36 36 H 1.08995 * 109.47616 * 60.00134 * 14 13 12 37 37 H 0.97005 * 119.99339 * 180.02562 * 18 17 15 38 38 H 1.08998 * 110.77817 * 269.02947 * 23 11 9 39 39 H 1.09003 * 110.93354 * 145.68146 * 23 11 9 40 40 H 1.09005 * 110.74196 * 314.62099 * 24 8 7 41 41 H 1.09000 * 110.74268 * 77.94498 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2191 -0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3004 0.1067 0.0002 7 6 5.6779 0.1859 0.0029 8 6 6.3047 1.4165 0.0043 9 6 5.5618 2.5924 0.0000 10 6 4.1723 2.5186 0.0006 11 7 6.4005 3.7147 -0.0086 12 6 6.4560 4.3202 -1.3458 13 6 7.1739 5.6689 -1.2655 14 6 7.2311 6.2998 -2.6581 15 6 7.9387 7.6280 -2.5792 16 1 8.3101 7.9865 -1.6304 17 6 8.1121 8.3857 -3.7181 18 7 7.6603 7.9489 -4.8734 19 14 8.9886 10.0324 -3.6201 20 1 9.3963 10.2932 -2.2162 21 1 10.1927 10.0047 -4.4887 22 1 8.0731 11.1084 -4.0772 23 6 7.7437 3.2811 0.4331 24 6 7.7735 1.7930 0.0151 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.8128 -0.8570 -0.0023 29 1 6.2685 -0.7182 -0.0006 30 1 3.5840 3.4243 0.0013 31 1 6.9988 3.6594 -2.0217 32 1 5.4429 4.4695 -1.7193 33 1 6.6312 6.3298 -0.5897 34 1 8.1870 5.5196 -0.8919 35 1 7.7737 5.6391 -3.3343 36 1 6.2180 6.4492 -3.0314 37 1 7.7826 8.4818 -5.6747 38 1 7.8466 3.3813 1.5135 39 1 8.5232 3.8429 -0.0817 40 1 8.3193 1.1975 0.7469 41 1 8.2083 1.6797 -0.9779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934167096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:46 Heat of formation + Delta-G solvation = -74.574956 kcal Electronic energy + Delta-G solvation = -22057.789979 eV Core-core repulsion = 18708.711684 eV Total energy + Delta-G solvation = -3349.078295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06836 -41.25904 -38.16506 -37.50073 -35.95269 -34.13864 -32.82609 -30.94944 -30.41547 -28.46460 -28.00821 -25.26186 -24.74196 -23.40434 -22.51669 -21.61693 -21.26229 -18.93280 -18.45294 -18.16255 -17.44821 -17.18084 -16.95901 -16.56905 -16.31991 -15.76005 -15.46364 -14.86867 -14.76145 -14.53106 -14.44017 -14.22146 -13.79122 -13.66282 -13.35830 -13.28185 -13.04065 -12.85736 -12.71475 -12.48828 -12.37625 -12.16906 -12.06625 -11.86280 -11.71817 -11.53219 -11.44730 -11.21281 -10.57017 -10.47513 -9.98440 -8.97715 -8.21313 -6.32382 -0.43860 0.24931 1.37484 1.39434 1.40313 1.53634 1.56190 2.39827 2.55936 2.74927 3.12086 3.46942 3.65762 3.76947 3.94178 4.03213 4.08082 4.19341 4.25350 4.30547 4.32087 4.33584 4.52122 4.59175 4.67773 4.72595 4.76510 4.88888 4.91488 5.02848 5.06394 5.12004 5.17713 5.21388 5.27812 5.36650 5.50092 5.60995 5.70374 5.83491 5.90650 6.17040 6.24817 6.59356 6.84422 7.37014 8.90943 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.003091 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.677622 B = 9055.055327 C =10033.483775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.513 3.487 4 O -0.541 6.541 5 C -0.129 4.129 6 C -0.062 4.062 7 C -0.095 4.095 8 C -0.102 4.102 9 C 0.062 3.938 10 C -0.069 4.069 11 N -0.506 5.506 12 C 0.073 3.927 13 C -0.088 4.088 14 C 0.026 3.974 15 C -0.540 4.540 16 H 0.061 0.939 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.280 1.280 23 C 0.040 3.960 24 C -0.106 4.106 25 H 0.059 0.941 26 H 0.141 0.859 27 H 0.062 0.938 28 H 0.169 0.831 29 H 0.169 0.831 30 H 0.115 0.885 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.062 0.938 35 H -0.005 1.005 36 H -0.013 1.013 37 H 0.264 0.736 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.912 -22.627 12.389 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.359 3.641 4 O -0.432 6.432 5 C -0.130 4.130 6 C -0.081 4.081 7 C -0.113 4.113 8 C -0.104 4.104 9 C -0.034 4.034 10 C -0.090 4.090 11 N -0.224 5.224 12 C -0.052 4.052 13 C -0.126 4.126 14 C -0.012 4.012 15 C -0.578 4.578 16 H 0.079 0.921 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.206 1.206 23 C -0.086 4.086 24 C -0.144 4.144 25 H 0.078 0.922 26 H 0.159 0.841 27 H 0.081 0.919 28 H 0.187 0.813 29 H 0.187 0.813 30 H 0.133 0.867 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.013 0.987 36 H 0.005 0.995 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.326 -21.855 12.546 25.982 hybrid contribution 0.014 0.999 -0.946 1.376 sum -6.312 -20.856 11.600 24.685 Atomic orbital electron populations 1.23627 0.74157 1.06147 1.02545 1.86513 1.25268 1.30979 1.83789 1.21328 0.89311 0.81611 0.71810 1.90839 1.67558 1.37359 1.47470 1.18783 0.88865 0.94743 1.10648 1.21637 0.93567 0.97825 0.95025 1.20783 0.93975 0.97122 0.99439 1.21740 0.97026 0.93742 0.97923 1.19581 0.92475 0.90678 1.00658 1.20469 0.92513 0.97250 0.98744 1.60132 1.10225 1.26371 1.25637 1.22107 1.00254 0.95690 0.87129 1.21424 0.99385 0.94055 0.97712 1.18963 0.94836 0.94758 0.92615 1.21697 1.36887 1.04814 0.94449 0.92104 1.26005 0.96578 1.02353 0.95025 1.70111 1.47774 1.39915 0.99654 0.85378 0.78164 0.78712 0.78676 1.18515 1.20120 1.20555 1.23366 0.88457 0.94204 1.02532 1.21831 0.91562 0.96765 1.04233 0.92197 0.84128 0.91921 0.81311 0.81343 0.86737 0.94133 0.92600 0.93217 0.91893 0.98678 0.99502 0.92766 0.88125 0.89106 0.86017 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.35 -6.89 9.81 -56.25 -0.55 -7.44 16 3 C 0.51 13.52 7.90 70.34 0.56 14.08 16 4 O -0.54 -17.94 16.12 19.93 0.32 -17.62 16 5 C -0.13 -3.24 5.86 -20.16 -0.12 -3.36 16 6 C -0.06 -1.11 9.62 22.55 0.22 -0.90 16 7 C -0.10 -1.57 10.01 22.18 0.22 -1.35 16 8 C -0.10 -2.23 6.23 -19.39 -0.12 -2.35 16 9 C 0.06 1.79 5.53 38.24 0.21 2.01 16 10 C -0.07 -2.09 9.62 22.75 0.22 -1.87 16 11 N -0.51 -15.80 5.04 -688.78 -3.47 -19.28 16 12 C 0.07 2.69 4.75 86.30 0.41 3.10 16 13 C -0.09 -3.72 5.19 30.59 0.16 -3.56 16 14 C 0.03 1.40 4.97 29.85 0.15 1.55 16 15 C -0.54 -31.31 9.11 25.60 0.23 -31.07 16 16 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 17 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 18 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 19 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 C 0.04 0.97 6.71 86.65 0.58 1.55 16 24 C -0.11 -1.96 6.92 30.68 0.21 -1.74 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.17 1.99 7.61 -2.91 -0.02 1.97 16 29 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 30 H 0.11 3.90 7.63 -2.91 -0.02 3.87 16 31 H 0.04 1.44 8.03 -2.39 -0.02 1.42 16 32 H 0.06 2.20 8.06 -2.39 -0.02 2.18 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 2.48 6.59 -2.38 -0.02 2.47 16 35 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 37 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 38 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.09 2.25 6.27 -2.39 -0.01 2.23 16 40 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -73.44 345.12 4.21 -69.23 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.02 Total: 7.69 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 4.59 Total: -22.00 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -3.19 Total: -76.74 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.23 Total: -25.06 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -73.44 4.21 -69.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934167096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.349 kcal (2) G-P(sol) polarization free energy of solvation -73.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds