Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.50703 * 109.47064 * 179.97438 * 5 3 2 7 7 C 1.38234 * 119.99770 * 269.72517 * 6 5 3 8 8 C 1.38239 * 119.99965 * 179.81074 * 7 6 5 9 9 C 1.38240 * 119.99598 * 0.41842 * 8 7 6 10 10 C 1.50694 * 119.99650 * 179.78977 * 9 8 7 11 11 N 1.46900 * 109.47555 * 270.02330 * 10 9 8 12 12 C 1.47479 * 110.99910 * 265.97581 * 11 10 9 13 13 C 1.53511 * 87.93396 * 221.29252 * 12 11 10 14 14 C 1.50701 * 114.17535 * 139.66699 * 13 12 11 15 15 H 1.07993 * 120.00120 * 266.16382 * 14 13 12 16 16 C 1.37878 * 119.99367 * 86.15865 * 14 13 12 17 17 N 1.31509 * 120.00492 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99540 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47026 * 90.00245 * 18 16 14 20 20 H 1.48499 * 109.47170 * 210.00182 * 18 16 14 21 21 H 1.48510 * 109.47234 * 330.00213 * 18 16 14 22 22 C 1.47475 * 111.00446 * 170.00044 * 11 10 9 23 23 C 1.38230 * 120.00091 * 359.81118 * 9 8 7 24 24 C 1.38232 * 119.99860 * 89.99959 * 6 5 3 25 25 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 27 27 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 28 28 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 29 29 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 30 30 H 1.08001 * 120.00330 * 359.97438 * 7 6 5 31 31 H 1.08001 * 120.00429 * 180.20865 * 8 7 6 32 32 H 1.09001 * 109.47443 * 30.02321 * 10 9 8 33 33 H 1.09003 * 109.47262 * 150.02293 * 10 9 8 34 34 H 1.09006 * 113.47574 * 336.05864 * 12 11 10 35 35 H 1.09004 * 113.47989 * 106.52691 * 12 11 10 36 36 H 1.08997 * 114.34393 * 272.36845 * 13 12 11 37 37 H 0.97001 * 120.00207 * 180.02562 * 17 16 14 38 38 H 1.08992 * 113.47850 * 253.47096 * 22 11 10 39 39 H 1.09005 * 113.47398 * 23.93936 * 22 11 10 40 40 H 1.07999 * 120.00198 * 179.97438 * 23 9 8 41 41 H 1.07996 * 120.00605 * 359.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9935 2.7201 -0.0011 7 6 4.1945 3.3809 -1.1985 8 6 4.5827 4.7077 -1.1990 9 6 4.7782 5.3711 -0.0020 10 6 5.2059 6.8160 -0.0026 11 7 6.6729 6.8926 -0.0024 12 6 7.1954 7.0172 1.3711 13 6 8.1994 8.0480 0.8361 14 6 8.4163 9.2286 1.7472 15 1 7.8404 10.1315 1.6075 16 6 9.3500 9.1560 2.7591 17 7 10.0516 8.0568 2.9290 18 14 9.6184 10.6193 3.8889 19 1 8.7087 10.5154 5.0580 20 1 11.0275 10.6309 4.3576 21 1 9.3324 11.8749 3.1492 22 6 7.1302 8.2740 -0.2420 23 6 4.5818 4.7088 1.1953 24 6 4.1899 3.3831 1.1958 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 3.9563 0.7806 0.8892 29 1 3.9557 0.7809 -0.8908 30 1 4.0458 2.8615 -2.1336 31 1 4.7365 5.2250 -2.1345 32 1 4.8165 7.3099 -0.8929 33 1 4.8161 7.3107 0.8871 34 1 6.4749 7.4367 2.0733 35 1 7.6646 6.1058 1.7416 36 1 9.1278 7.6179 0.4605 37 1 10.7082 8.0056 3.6411 38 1 7.5440 8.4278 -1.2385 39 1 6.3923 9.0289 0.0298 40 1 4.7349 5.2270 2.1304 41 1 4.0368 2.8657 2.1313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142898205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = -29.281607 kcal Electronic energy + Delta-G solvation = -21845.353415 eV Core-core repulsion = 18498.239187 eV Total energy + Delta-G solvation = -3347.114228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.75980 -39.50069 -38.45770 -36.67741 -33.79076 -32.52952 -30.77056 -30.34065 -28.31129 -26.99539 -25.09779 -24.73465 -22.67262 -22.55422 -21.33249 -20.25930 -18.59941 -17.86352 -16.93610 -16.81211 -16.65969 -15.75408 -15.36833 -15.00492 -14.85646 -14.33044 -14.01752 -13.85580 -13.75779 -13.41063 -13.21539 -12.70624 -12.44418 -12.27874 -12.17894 -11.86621 -11.70634 -11.36260 -11.08363 -11.07011 -10.88026 -10.87236 -10.70006 -10.55513 -10.24281 -9.73389 -9.31480 -8.94819 -8.71713 -8.48113 -8.34720 -7.97892 -6.05539 -4.10154 1.37388 1.61503 1.99795 2.55628 3.28325 3.35548 3.38487 3.92233 4.40106 4.44460 4.73082 4.76130 4.79405 4.87308 5.00165 5.08440 5.11034 5.21516 5.23206 5.25985 5.33573 5.57166 5.66149 5.82060 5.88340 6.07366 6.12983 6.21129 6.24016 6.33196 6.47483 6.57537 6.62235 6.68026 6.72961 6.87476 7.15188 7.15972 7.22022 7.53025 7.72693 7.91050 8.07622 8.37257 8.93105 9.54798 11.03985 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035626 B = 0.002662 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.754279 B =10516.702051 C =10819.360326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.458 3.542 4 O -0.495 6.495 5 C -0.068 4.068 6 C -0.094 4.094 7 C -0.104 4.104 8 C -0.104 4.104 9 C -0.049 4.049 10 C 0.053 3.947 11 N -0.478 5.478 12 C 0.006 3.994 13 C 0.042 3.958 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.006 4.006 23 C -0.108 4.108 24 C -0.102 4.102 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.262 0.738 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.121 0.879 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.637 -15.345 -6.103 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.300 3.700 4 O -0.381 6.381 5 C -0.105 4.105 6 C -0.095 4.095 7 C -0.122 4.122 8 C -0.122 4.122 9 C -0.050 4.050 10 C -0.076 4.076 11 N -0.200 5.200 12 C -0.123 4.123 13 C 0.022 3.978 14 C -0.555 4.555 15 H 0.076 0.924 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.135 4.135 23 C -0.127 4.127 24 C -0.120 4.120 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.139 0.861 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.547 -15.673 -6.439 22.996 hybrid contribution -0.504 1.352 1.257 1.914 sum -16.052 -14.320 -5.181 22.126 Atomic orbital electron populations 1.23247 0.76428 1.03564 1.02601 1.86505 1.23406 1.33738 1.84455 1.23857 0.92120 0.81290 0.72691 1.90710 1.67018 1.36244 1.44102 1.20278 0.87424 0.96261 1.06540 1.19092 1.02723 0.93570 0.94073 1.20863 0.99767 0.94808 0.96798 1.20940 0.99322 0.94175 0.97807 1.19865 0.96034 0.96138 0.92948 1.21660 0.92672 0.91951 1.01276 1.68922 1.06466 1.24467 1.20138 1.24110 0.98760 1.00699 0.88685 1.20091 0.92588 0.93820 0.91251 1.21036 1.21113 0.99414 1.13897 0.92439 1.25022 0.95297 0.95802 0.97520 1.69967 1.24022 1.26457 1.31867 0.86621 0.77428 0.83091 0.81017 1.20668 1.21139 1.19826 1.24026 0.99503 0.89123 1.00826 1.21033 0.99272 0.94383 0.98009 1.20873 0.99454 0.94749 0.96900 0.88157 0.91917 0.91933 0.86824 0.86858 0.86514 0.86079 0.91076 0.93228 0.92892 0.91857 0.91792 0.92862 0.91949 0.92795 0.86061 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.43 10.56 -39.26 -0.41 -3.84 16 3 C 0.46 5.03 7.95 36.01 0.29 5.32 16 4 O -0.49 -7.14 15.78 -18.75 -0.30 -7.43 16 5 C -0.07 -0.62 5.94 -29.03 -0.17 -0.79 16 6 C -0.09 -1.18 4.37 -104.62 -0.46 -1.64 16 7 C -0.10 -1.35 9.70 -39.58 -0.38 -1.74 16 8 C -0.10 -1.52 9.70 -39.58 -0.38 -1.90 16 9 C -0.05 -0.80 5.46 -104.63 -0.57 -1.37 16 10 C 0.05 0.91 4.94 -4.98 -0.02 0.89 16 11 N -0.48 -9.73 6.32 -246.09 -1.55 -11.28 16 12 C 0.01 0.14 7.28 -7.55 -0.05 0.09 16 13 C 0.04 1.04 3.77 -91.24 -0.34 0.70 16 14 C -0.52 -14.02 8.82 -34.44 -0.30 -14.32 16 15 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 16 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 17 N -0.89 -25.55 13.26 55.43 0.74 -24.81 16 18 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 C -0.01 -0.13 7.25 -7.55 -0.05 -0.18 16 23 C -0.11 -1.68 9.70 -39.58 -0.38 -2.07 16 24 C -0.10 -1.38 9.70 -39.58 -0.38 -1.77 16 25 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 27 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 28 H 0.11 0.80 8.09 -51.93 -0.42 0.38 16 29 H 0.11 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.07 1.13 8.02 -51.93 -0.42 0.71 16 33 H 0.05 0.87 7.24 -51.93 -0.38 0.49 16 34 H 0.05 1.21 7.37 -51.93 -0.38 0.83 16 35 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 36 H 0.06 1.76 8.11 -51.93 -0.42 1.34 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 40 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -31.49 351.23 -9.72 -41.21 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.19 Total: 0.61 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -2.26 Total: -15.74 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.82 Total: -36.09 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.71 Total: -11.27 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.49 -9.72 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142898205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.924 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds