Wall clock time and date at job start Tue Mar 31 2020 05:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.50703 * 109.47064 * 179.97438 * 5 3 2 7 7 C 1.38234 * 119.99770 * 269.72517 * 6 5 3 8 8 C 1.38239 * 119.99965 * 179.81074 * 7 6 5 9 9 C 1.38240 * 119.99598 * 0.41842 * 8 7 6 10 10 C 1.50694 * 119.99650 * 179.78977 * 9 8 7 11 11 N 1.46900 * 109.47555 * 270.02330 * 10 9 8 12 12 C 1.47479 * 110.99910 * 265.97581 * 11 10 9 13 13 C 1.53511 * 87.93396 * 221.29252 * 12 11 10 14 14 C 1.50701 * 114.17535 * 139.66699 * 13 12 11 15 15 H 1.07993 * 120.00120 * 266.16382 * 14 13 12 16 16 C 1.37878 * 119.99367 * 86.15865 * 14 13 12 17 17 N 1.31509 * 120.00492 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99540 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47026 * 90.00245 * 18 16 14 20 20 H 1.48499 * 109.47170 * 210.00182 * 18 16 14 21 21 H 1.48510 * 109.47234 * 330.00213 * 18 16 14 22 22 C 1.47475 * 111.00446 * 170.00044 * 11 10 9 23 23 C 1.38230 * 120.00091 * 359.81118 * 9 8 7 24 24 C 1.38232 * 119.99860 * 89.99959 * 6 5 3 25 25 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 27 27 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 28 28 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 29 29 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 30 30 H 1.08001 * 120.00330 * 359.97438 * 7 6 5 31 31 H 1.08001 * 120.00429 * 180.20865 * 8 7 6 32 32 H 1.09001 * 109.47443 * 30.02321 * 10 9 8 33 33 H 1.09003 * 109.47262 * 150.02293 * 10 9 8 34 34 H 1.09006 * 113.47574 * 336.05864 * 12 11 10 35 35 H 1.09004 * 113.47989 * 106.52691 * 12 11 10 36 36 H 1.08997 * 114.34393 * 272.36845 * 13 12 11 37 37 H 0.97001 * 120.00207 * 180.02562 * 17 16 14 38 38 H 1.08992 * 113.47850 * 253.47096 * 22 11 10 39 39 H 1.09005 * 113.47398 * 23.93936 * 22 11 10 40 40 H 1.07999 * 120.00198 * 179.97438 * 23 9 8 41 41 H 1.07996 * 120.00605 * 359.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9935 2.7201 -0.0011 7 6 4.1945 3.3809 -1.1985 8 6 4.5827 4.7077 -1.1990 9 6 4.7782 5.3711 -0.0020 10 6 5.2059 6.8160 -0.0026 11 7 6.6729 6.8926 -0.0024 12 6 7.1954 7.0172 1.3711 13 6 8.1994 8.0480 0.8361 14 6 8.4163 9.2286 1.7472 15 1 7.8404 10.1315 1.6075 16 6 9.3500 9.1560 2.7591 17 7 10.0516 8.0568 2.9290 18 14 9.6184 10.6193 3.8889 19 1 8.7087 10.5154 5.0580 20 1 11.0275 10.6309 4.3576 21 1 9.3324 11.8749 3.1492 22 6 7.1302 8.2740 -0.2420 23 6 4.5818 4.7088 1.1953 24 6 4.1899 3.3831 1.1958 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 3.9563 0.7806 0.8892 29 1 3.9557 0.7809 -0.8908 30 1 4.0458 2.8615 -2.1336 31 1 4.7365 5.2250 -2.1345 32 1 4.8165 7.3099 -0.8929 33 1 4.8161 7.3107 0.8871 34 1 6.4749 7.4367 2.0733 35 1 7.6646 6.1058 1.7416 36 1 9.1278 7.6179 0.4605 37 1 10.7082 8.0056 3.6411 38 1 7.5440 8.4278 -1.2385 39 1 6.3923 9.0289 0.0298 40 1 4.7349 5.2270 2.1304 41 1 4.0368 2.8657 2.1313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142898205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:01 Heat of formation + Delta-G solvation = -48.218238 kcal Electronic energy + Delta-G solvation = -21846.174569 eV Core-core repulsion = 18498.239187 eV Total energy + Delta-G solvation = -3347.935382 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60565 -40.91959 -39.78878 -37.51261 -35.13487 -34.30790 -31.83490 -31.61962 -29.43566 -28.13414 -26.69817 -26.45916 -24.15403 -23.63373 -22.37141 -21.29906 -20.47474 -18.68137 -18.65528 -17.73482 -17.58768 -16.94067 -16.73308 -16.44240 -16.19188 -15.94088 -15.68245 -14.93919 -14.57739 -14.47585 -14.28428 -13.97988 -13.92367 -13.42718 -13.27531 -13.12902 -13.00518 -12.89977 -12.84430 -12.46216 -12.26110 -12.10874 -11.79748 -11.75678 -11.59030 -11.51006 -11.20173 -10.88637 -10.51144 -9.80502 -9.74296 -9.47593 -8.15579 -6.27139 0.31272 0.53402 1.19107 1.42217 1.42987 1.53684 1.82946 2.41947 2.83508 3.13440 3.45853 3.59650 3.81172 3.93323 4.04630 4.12333 4.12685 4.28155 4.31988 4.32789 4.41106 4.48469 4.53305 4.61392 4.61606 4.71774 4.74107 4.78802 4.86577 4.95129 5.08146 5.16206 5.22281 5.37798 5.40831 5.51235 5.59077 5.62018 5.78199 5.84484 6.10224 6.28817 6.36533 6.74444 6.82347 7.41350 8.94223 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035626 B = 0.002662 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.754279 B =10516.702051 C =10819.360326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.537 6.537 5 C -0.065 4.065 6 C -0.091 4.091 7 C -0.108 4.108 8 C -0.114 4.114 9 C -0.075 4.075 10 C 0.056 3.944 11 N -0.475 5.475 12 C 0.021 3.979 13 C 0.022 3.978 14 C -0.530 4.530 15 H 0.060 0.940 16 C 0.014 3.986 17 N -0.922 5.922 18 Si 0.958 3.042 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.008 3.992 23 C -0.129 4.129 24 C -0.111 4.111 25 H 0.132 0.868 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.139 0.861 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.042 0.958 36 H 0.030 0.970 37 H 0.263 0.737 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.112 0.888 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.862 -16.441 -6.710 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.307 3.693 4 O -0.426 6.426 5 C -0.102 4.102 6 C -0.092 4.092 7 C -0.125 4.125 8 C -0.132 4.132 9 C -0.075 4.075 10 C -0.072 4.072 11 N -0.197 5.197 12 C -0.108 4.108 13 C 0.003 3.997 14 C -0.568 4.568 15 H 0.078 0.922 16 C -0.186 4.186 17 N -0.561 5.561 18 Si 0.784 3.216 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.189 1.189 22 C -0.120 4.120 23 C -0.147 4.147 24 C -0.129 4.129 25 H 0.151 0.849 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.149 0.851 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.130 0.870 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.785 -16.784 -7.059 24.765 hybrid contribution -0.201 1.571 1.397 2.112 sum -16.986 -15.213 -5.662 23.495 Atomic orbital electron populations 1.23513 0.75091 1.05619 1.02279 1.86499 1.24737 1.32785 1.83890 1.24144 0.92692 0.81055 0.71409 1.90705 1.68026 1.37584 1.46301 1.20391 0.86288 0.94261 1.09247 1.19476 1.00968 0.95316 0.93397 1.21245 0.98686 0.94314 0.98298 1.21149 0.99356 0.95135 0.97559 1.19838 0.98090 0.95643 0.93966 1.21649 0.90257 0.93452 1.01818 1.68850 1.09073 1.23886 1.17867 1.23806 0.98125 0.98887 0.90002 1.20036 0.92498 0.94088 0.93102 1.21372 1.21162 1.00034 1.14268 0.92192 1.25849 0.95115 0.98505 0.99111 1.70096 1.24774 1.28502 1.32695 0.85554 0.77301 0.79822 0.78972 1.20075 1.20899 1.18900 1.23863 0.98122 0.89836 1.00189 1.21122 1.00454 0.95566 0.97599 1.21158 0.99069 0.94153 0.98482 0.84942 0.92399 0.92185 0.84363 0.83844 0.83701 0.85062 0.89335 0.93742 0.93229 0.93921 0.95190 0.92829 0.90537 0.91891 0.87033 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -5.91 10.56 -51.41 -0.54 -6.46 16 3 C 0.46 9.12 7.95 71.24 0.57 9.68 16 4 O -0.54 -14.85 15.78 21.97 0.35 -14.50 16 5 C -0.07 -0.97 5.94 29.10 0.17 -0.80 16 6 C -0.09 -2.09 4.37 -19.87 -0.09 -2.18 16 7 C -0.11 -2.56 9.70 22.27 0.22 -2.34 16 8 C -0.11 -3.18 9.70 22.27 0.22 -2.96 16 9 C -0.07 -2.41 5.46 -19.87 -0.11 -2.52 16 10 C 0.06 1.93 4.94 85.56 0.42 2.35 16 11 N -0.47 -19.42 6.32 -932.49 -5.89 -25.31 16 12 C 0.02 1.00 7.28 83.57 0.61 1.61 16 13 C 0.02 1.13 3.77 -11.19 -0.04 1.09 16 14 C -0.53 -29.19 8.82 25.60 0.23 -28.97 16 15 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 16 C 0.01 0.76 5.46 84.66 0.46 1.22 16 17 N -0.92 -54.50 13.26 21.45 0.28 -54.21 16 18 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 22 C 0.01 0.36 7.25 83.58 0.61 0.96 16 23 C -0.13 -4.04 9.70 22.27 0.22 -3.82 16 24 C -0.11 -2.91 9.70 22.27 0.22 -2.69 16 25 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 27 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 28 H 0.14 1.44 8.09 -2.39 -0.02 1.42 16 29 H 0.14 1.33 8.08 -2.39 -0.02 1.31 16 30 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 32 H 0.09 2.70 8.02 -2.39 -0.02 2.68 16 33 H 0.04 1.56 7.24 -2.39 -0.02 1.54 16 34 H 0.05 2.35 7.37 -2.38 -0.02 2.33 16 35 H 0.04 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.03 1.73 8.11 -2.39 -0.02 1.71 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.06 2.53 7.87 -2.38 -0.02 2.51 16 40 H 0.11 3.57 8.06 -2.91 -0.02 3.54 16 41 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -69.14 351.23 2.12 -67.02 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.01 Total: 15.89 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.89 Total: -27.84 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -5.60 Total: -79.52 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.20 Total: -20.96 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -69.14 2.12 -67.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142898205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.807 kcal (2) G-P(sol) polarization free energy of solvation -69.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds