Wall clock time and date at job start Tue Mar 31 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.34936 * 117.00015 * 2 1 4 4 O 1.21653 * 120.00085 * 0.02562 * 3 2 1 5 5 C 1.41707 * 119.99866 * 180.02562 * 3 2 1 6 6 C 1.35169 * 119.99834 * 180.02562 * 5 3 2 7 7 C 1.46873 * 119.99932 * 179.97438 * 6 5 3 8 8 C 1.40058 * 120.09532 * 179.97438 * 7 6 5 9 9 C 1.37087 * 119.89988 * 180.02562 * 8 7 6 10 10 C 1.39252 * 120.09681 * 0.02562 * 9 8 7 11 11 N 1.39093 * 119.90079 * 179.97438 * 10 9 8 12 12 C 1.46506 * 120.00015 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47237 * 179.72082 * 12 11 10 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.50709 * 109.47079 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99331 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00070 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00390 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46949 * 59.99946 * 19 17 15 21 21 H 1.48496 * 109.47648 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47026 * 300.00228 * 19 17 15 23 23 C 1.39254 * 120.19633 * 0.24754 * 10 9 8 24 24 C 1.37089 * 120.09183 * 359.48946 * 23 10 9 25 25 H 1.09001 * 109.47268 * 59.99719 * 1 2 3 26 26 H 1.08994 * 109.47363 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47125 * 300.00075 * 1 2 3 28 28 H 1.08001 * 120.00322 * 0.02562 * 5 3 2 29 29 H 1.07991 * 119.99836 * 0.02562 * 6 5 3 30 30 H 1.07998 * 120.04567 * 0.02562 * 8 7 6 31 31 H 1.07993 * 119.94784 * 179.97438 * 9 8 7 32 32 H 0.97005 * 120.00115 * 359.71928 * 11 10 9 33 33 H 1.09001 * 109.46512 * 299.72452 * 12 11 10 34 34 H 1.08998 * 109.47174 * 59.71573 * 12 11 10 35 35 H 1.09000 * 109.46986 * 299.99958 * 13 12 11 36 36 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 37 37 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 38 38 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 39 39 H 0.96994 * 120.00439 * 179.97438 * 18 17 15 40 40 H 1.07999 * 119.95185 * 179.74719 * 23 10 9 41 41 H 1.08001 * 120.04683 * 180.27666 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0416 1.2023 0.0000 4 8 1.3790 2.2226 0.0005 5 6 3.4567 1.2764 -0.0005 6 6 4.0704 2.4808 0.0000 7 6 5.5371 2.5576 0.0000 8 6 6.1750 3.8045 0.0000 9 6 7.5443 3.8716 -0.0006 10 6 8.3007 2.7024 -0.0016 11 7 9.6897 2.7752 -0.0027 12 6 10.4876 1.5465 -0.0033 13 6 11.9751 1.9044 -0.0115 14 6 12.8083 0.6212 -0.0114 15 6 14.2736 0.9737 -0.0188 16 1 14.5797 2.0094 -0.0228 17 6 15.2231 -0.0259 -0.0196 18 7 14.8503 -1.2871 -0.0143 19 14 17.0393 0.4109 -0.0295 20 1 17.3623 1.2117 1.1786 21 1 17.8481 -0.8344 -0.0294 22 1 17.3512 1.2030 -1.2464 23 6 7.6706 1.4606 -0.0074 24 6 6.3018 1.3843 -0.0014 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0450 0.3707 -0.0014 29 1 3.4822 3.3865 0.0012 30 1 5.5891 4.7117 0.0004 31 1 8.0369 4.8325 -0.0010 32 1 10.1301 3.6395 -0.0068 33 1 10.2588 0.9644 0.8894 34 1 10.2502 0.9595 -0.8905 35 1 12.2038 2.4865 -0.9042 36 1 12.2125 2.4913 0.8758 37 1 12.5796 0.0394 0.8815 38 1 12.5711 0.0339 -0.8984 39 1 15.5182 -1.9904 -0.0152 40 1 8.2611 0.5563 -0.0123 41 1 5.8139 0.4207 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168436297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:35 Heat of formation + Delta-G solvation = -60.550090 kcal Electronic energy + Delta-G solvation = -20674.103268 eV Core-core repulsion = 17325.633137 eV Total energy + Delta-G solvation = -3348.470131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69158 -39.64003 -37.05759 -36.43180 -34.29950 -33.14776 -31.45427 -31.14744 -29.23050 -27.78477 -26.34454 -24.11468 -23.65659 -22.41623 -21.17144 -20.45332 -19.60579 -18.20560 -17.25193 -16.83224 -16.59030 -16.44386 -15.68868 -15.32824 -14.98751 -14.58072 -14.25437 -14.11956 -13.70362 -13.62399 -13.38293 -13.28722 -12.65990 -12.37136 -12.13935 -12.09970 -11.91903 -11.76506 -11.04766 -11.02039 -10.96122 -10.75894 -10.75644 -10.69348 -10.65604 -9.94626 -9.56540 -9.35107 -9.22825 -9.12071 -8.44230 -7.26549 -6.09172 -4.12544 0.32330 1.41120 1.83402 2.74701 2.94400 3.27389 3.32444 3.33987 3.48801 3.87254 4.38481 4.60177 4.63200 4.84767 4.87432 4.93166 4.95103 5.07896 5.24198 5.26813 5.30497 5.34230 5.43700 5.58354 5.65297 5.82912 5.92252 5.95615 6.00691 6.19473 6.25637 6.36063 6.45252 6.49088 6.56982 6.75856 6.86467 7.30990 7.53060 7.63701 7.64984 7.71184 7.88560 8.29868 8.93523 9.52187 11.02017 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035014 B = 0.001982 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.479737 B =14124.913059 C =14893.327128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.505 3.495 4 O -0.528 6.528 5 C -0.254 4.254 6 C 0.048 3.952 7 C -0.177 4.177 8 C -0.030 4.030 9 C -0.214 4.214 10 C 0.252 3.748 11 N -0.730 5.730 12 C 0.114 3.886 13 C -0.121 4.121 14 C 0.025 3.975 15 C -0.525 4.525 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.209 4.209 24 C -0.032 4.032 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.401 0.599 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.130 0.870 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.264 6.135 0.034 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.354 3.646 4 O -0.420 6.420 5 C -0.273 4.273 6 C 0.029 3.971 7 C -0.180 4.180 8 C -0.049 4.049 9 C -0.237 4.237 10 C 0.143 3.857 11 N -0.353 5.353 12 C -0.009 4.009 13 C -0.159 4.159 14 C -0.013 4.013 15 C -0.563 4.563 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.232 4.232 24 C -0.050 4.050 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.236 0.764 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.147 0.853 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.241 6.019 0.036 24.008 hybrid contribution 1.057 0.447 -0.007 1.148 sum -22.184 6.466 0.029 23.107 Atomic orbital electron populations 1.22844 0.77321 1.03458 1.02253 1.86224 1.23024 1.33343 1.84629 1.20032 0.90154 0.81206 0.73171 1.90863 1.67755 1.35782 1.47626 1.21042 0.90809 1.00128 1.15341 1.22478 0.93056 0.97414 0.84135 1.18592 0.91574 0.93742 1.14053 1.20918 0.93856 0.96476 0.93641 1.20420 0.93899 0.96828 1.12532 1.18219 0.84210 0.93937 0.89381 1.45158 1.02376 1.09821 1.77937 1.21754 0.92275 0.85695 1.01146 1.21869 0.91056 1.01970 1.01023 1.19023 0.93819 0.90878 0.97569 1.21154 0.91189 0.92732 1.51257 0.92707 1.25020 0.99206 0.95013 0.95149 1.69942 1.33993 0.98972 1.50360 0.86629 0.84856 0.77714 0.78634 1.20217 1.21210 1.20221 1.20587 0.94785 0.96494 1.11334 1.21070 0.93130 0.97620 0.93214 0.92315 0.88243 0.92308 0.84407 0.85013 0.85732 0.85849 0.76431 0.92031 0.92038 0.92673 0.92673 0.96298 0.96297 0.92808 0.85258 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.45 101.05 1.06 1.32 16 2 O -0.36 -3.73 10.46 -41.14 -0.43 -4.16 16 3 C 0.50 5.88 7.69 32.06 0.25 6.13 16 4 O -0.53 -7.32 15.88 -19.38 -0.31 -7.62 16 5 C -0.25 -2.57 9.33 -39.35 -0.37 -2.94 16 6 C 0.05 0.47 9.41 -37.18 -0.35 0.12 16 7 C -0.18 -1.85 5.87 -105.04 -0.62 -2.46 16 8 C -0.03 -0.29 9.76 -39.32 -0.38 -0.68 16 9 C -0.21 -2.27 9.85 -39.62 -0.39 -2.66 16 10 C 0.25 3.09 6.65 -83.81 -0.56 2.53 16 11 N -0.73 -9.31 5.71 -58.60 -0.33 -9.65 16 12 C 0.11 1.73 4.90 -4.04 -0.02 1.71 16 13 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.53 -14.28 9.11 -34.44 -0.31 -14.59 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.21 -2.53 9.26 -39.62 -0.37 -2.90 16 24 C -0.03 -0.34 9.38 -39.32 -0.37 -0.71 16 25 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.14 1.20 6.07 -52.49 -0.32 0.88 16 29 H 0.13 1.23 7.45 -52.49 -0.39 0.84 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.40 4.54 8.47 -40.82 -0.35 4.20 16 33 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 34 H 0.06 0.94 7.91 -51.93 -0.41 0.53 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.13 1.55 6.69 -52.49 -0.35 1.20 16 41 H 0.13 1.12 6.16 -52.49 -0.32 0.80 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -31.09 353.39 -8.74 -39.82 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.90 Total: 1.11 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.81 Total: -15.52 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.40 Total: -35.00 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.74 Total: -11.78 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.09 -8.74 -39.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.726 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds