Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.34936 * 117.00015 * 2 1 4 4 O 1.21653 * 120.00085 * 0.02562 * 3 2 1 5 5 C 1.41707 * 119.99866 * 180.02562 * 3 2 1 6 6 C 1.35169 * 119.99834 * 180.02562 * 5 3 2 7 7 C 1.46873 * 119.99932 * 179.97438 * 6 5 3 8 8 C 1.40058 * 120.09532 * 179.97438 * 7 6 5 9 9 C 1.37087 * 119.89988 * 180.02562 * 8 7 6 10 10 C 1.39252 * 120.09681 * 0.02562 * 9 8 7 11 11 N 1.39093 * 119.90079 * 179.97438 * 10 9 8 12 12 C 1.46506 * 120.00015 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47237 * 179.72082 * 12 11 10 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.50709 * 109.47079 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99331 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00070 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00390 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46949 * 59.99946 * 19 17 15 21 21 H 1.48496 * 109.47648 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47026 * 300.00228 * 19 17 15 23 23 C 1.39254 * 120.19633 * 0.24754 * 10 9 8 24 24 C 1.37089 * 120.09183 * 359.48946 * 23 10 9 25 25 H 1.09001 * 109.47268 * 59.99719 * 1 2 3 26 26 H 1.08994 * 109.47363 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47125 * 300.00075 * 1 2 3 28 28 H 1.08001 * 120.00322 * 0.02562 * 5 3 2 29 29 H 1.07991 * 119.99836 * 0.02562 * 6 5 3 30 30 H 1.07998 * 120.04567 * 0.02562 * 8 7 6 31 31 H 1.07993 * 119.94784 * 179.97438 * 9 8 7 32 32 H 0.97005 * 120.00115 * 359.71928 * 11 10 9 33 33 H 1.09001 * 109.46512 * 299.72452 * 12 11 10 34 34 H 1.08998 * 109.47174 * 59.71573 * 12 11 10 35 35 H 1.09000 * 109.46986 * 299.99958 * 13 12 11 36 36 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 37 37 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 38 38 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 39 39 H 0.96994 * 120.00439 * 179.97438 * 18 17 15 40 40 H 1.07999 * 119.95185 * 179.74719 * 23 10 9 41 41 H 1.08001 * 120.04683 * 180.27666 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0416 1.2023 0.0000 4 8 1.3790 2.2226 0.0005 5 6 3.4567 1.2764 -0.0005 6 6 4.0704 2.4808 0.0000 7 6 5.5371 2.5576 0.0000 8 6 6.1750 3.8045 0.0000 9 6 7.5443 3.8716 -0.0006 10 6 8.3007 2.7024 -0.0016 11 7 9.6897 2.7752 -0.0027 12 6 10.4876 1.5465 -0.0033 13 6 11.9751 1.9044 -0.0115 14 6 12.8083 0.6212 -0.0114 15 6 14.2736 0.9737 -0.0188 16 1 14.5797 2.0094 -0.0228 17 6 15.2231 -0.0259 -0.0196 18 7 14.8503 -1.2871 -0.0143 19 14 17.0393 0.4109 -0.0295 20 1 17.3623 1.2117 1.1786 21 1 17.8481 -0.8344 -0.0294 22 1 17.3512 1.2030 -1.2464 23 6 7.6706 1.4606 -0.0074 24 6 6.3018 1.3843 -0.0014 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0450 0.3707 -0.0014 29 1 3.4822 3.3865 0.0012 30 1 5.5891 4.7117 0.0004 31 1 8.0369 4.8325 -0.0010 32 1 10.1301 3.6395 -0.0068 33 1 10.2588 0.9644 0.8894 34 1 10.2502 0.9595 -0.8905 35 1 12.2038 2.4865 -0.9042 36 1 12.2125 2.4913 0.8758 37 1 12.5796 0.0394 0.8815 38 1 12.5711 0.0339 -0.8984 39 1 15.5182 -1.9904 -0.0152 40 1 8.2611 0.5563 -0.0123 41 1 5.8139 0.4207 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168436297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = -77.033698 kcal Electronic energy + Delta-G solvation = -20674.818051 eV Core-core repulsion = 17325.633137 eV Total energy + Delta-G solvation = -3349.184914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.54219 -40.51132 -37.97455 -37.47336 -35.77022 -34.52213 -32.98536 -31.97676 -30.26630 -28.76585 -27.68505 -25.32294 -24.74549 -23.54359 -22.22287 -21.86208 -20.43532 -19.06053 -18.52106 -18.18346 -17.60079 -17.39715 -16.67160 -16.51232 -16.34000 -16.20702 -15.14336 -15.04467 -14.56496 -14.50522 -14.32453 -14.26549 -14.18695 -13.69745 -13.49666 -13.34340 -12.82552 -12.77578 -12.66573 -12.51034 -12.38747 -11.98068 -11.73750 -11.72318 -11.60843 -11.47976 -11.45659 -11.20796 -10.55470 -10.26889 -9.94250 -8.20867 -8.19172 -6.31825 -0.50844 0.58498 0.96803 1.40984 1.43086 1.51093 2.00898 2.09810 2.38024 2.49259 3.03292 3.12927 3.80873 3.84802 4.06038 4.10914 4.22420 4.22470 4.31079 4.34671 4.35004 4.46678 4.50727 4.56558 4.72442 4.75319 4.95345 5.00893 5.05706 5.11881 5.16587 5.22438 5.39112 5.41992 5.49422 5.54227 5.70843 5.75022 5.83328 5.87089 6.20845 6.33653 6.78743 6.79452 6.85427 7.37646 8.90574 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035014 B = 0.001982 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.479737 B =14124.913059 C =14893.327128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.502 3.498 4 O -0.556 6.556 5 C -0.258 4.258 6 C 0.055 3.945 7 C -0.178 4.178 8 C -0.030 4.030 9 C -0.213 4.213 10 C 0.234 3.766 11 N -0.730 5.730 12 C 0.132 3.868 13 C -0.105 4.105 14 C 0.025 3.975 15 C -0.545 4.545 16 H 0.061 0.939 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.964 3.036 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.267 1.267 23 C -0.226 4.226 24 C -0.036 4.036 25 H 0.058 0.942 26 H 0.130 0.870 27 H 0.058 0.942 28 H 0.151 0.849 29 H 0.138 0.862 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.408 0.592 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.060 0.940 37 H -0.004 1.004 38 H -0.004 1.004 39 H 0.264 0.736 40 H 0.122 0.878 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.778 7.469 0.030 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.354 3.646 4 O -0.451 6.451 5 C -0.277 4.277 6 C 0.036 3.964 7 C -0.180 4.180 8 C -0.048 4.048 9 C -0.235 4.235 10 C 0.126 3.874 11 N -0.355 5.355 12 C 0.007 3.993 13 C -0.143 4.143 14 C -0.012 4.012 15 C -0.583 4.583 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.788 3.212 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.192 1.192 23 C -0.249 4.249 24 C -0.054 4.054 25 H 0.076 0.924 26 H 0.148 0.852 27 H 0.076 0.924 28 H 0.169 0.831 29 H 0.156 0.844 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.244 0.756 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.014 0.986 38 H 0.014 0.986 39 H 0.072 0.928 40 H 0.140 0.860 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.784 7.364 0.033 24.898 hybrid contribution 1.075 0.003 -0.006 1.075 sum -22.710 7.367 0.027 23.875 Atomic orbital electron populations 1.23130 0.75790 1.05496 1.02219 1.86218 1.24639 1.32708 1.84232 1.20288 0.90651 0.81157 0.72518 1.90846 1.68430 1.36634 1.49179 1.21172 0.90318 1.00865 1.15348 1.22511 0.92743 0.97654 0.83495 1.18750 0.91800 0.93997 1.13482 1.21256 0.93815 0.97313 0.92433 1.20657 0.94211 0.97010 1.11655 1.18407 0.83851 0.94706 0.90400 1.44862 1.02567 1.09056 1.79063 1.21329 0.90518 0.86661 1.00761 1.21575 0.92315 0.98926 1.01479 1.18927 0.93927 0.93088 0.95298 1.21660 0.92807 0.93139 1.50714 0.92032 1.25961 1.04201 0.94896 0.94775 1.70077 1.35540 1.00051 1.51496 0.85523 0.78940 0.77569 0.79151 1.19206 1.21007 1.19220 1.20682 0.95483 0.96445 1.12303 1.21269 0.92725 0.98683 0.92768 0.92367 0.85223 0.92360 0.83145 0.84403 0.83026 0.83976 0.75553 0.92553 0.92547 0.92138 0.92142 0.98589 0.98584 0.92764 0.85988 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.45 113.37 1.18 1.56 16 2 O -0.36 -7.18 10.46 -58.52 -0.61 -7.79 16 3 C 0.50 11.24 7.69 68.68 0.53 11.77 16 4 O -0.56 -15.05 15.88 19.34 0.31 -14.75 16 5 C -0.26 -4.86 9.33 22.42 0.21 -4.65 16 6 C 0.05 0.98 9.41 23.82 0.22 1.21 16 7 C -0.18 -3.36 5.87 -20.13 -0.12 -3.48 16 8 C -0.03 -0.51 9.76 22.44 0.22 -0.29 16 9 C -0.21 -4.05 9.85 22.24 0.22 -3.83 16 10 C 0.23 5.47 6.65 38.48 0.26 5.73 16 11 N -0.73 -17.94 5.71 -339.32 -1.94 -19.88 16 12 C 0.13 3.98 4.90 86.38 0.42 4.40 16 13 C -0.11 -3.85 5.27 30.59 0.16 -3.69 16 14 C 0.03 1.26 4.97 29.85 0.15 1.40 16 15 C -0.55 -29.88 9.11 25.60 0.23 -29.64 16 16 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 17 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 18 N -0.93 -55.41 13.29 21.45 0.28 -55.13 16 19 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 C -0.23 -5.35 9.26 22.24 0.21 -5.14 16 24 C -0.04 -0.73 9.38 22.44 0.21 -0.52 16 25 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 26 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 28 H 0.15 2.37 6.07 -2.91 -0.02 2.36 16 29 H 0.14 2.32 7.45 -2.91 -0.02 2.30 16 30 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 31 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.41 8.65 8.47 -92.70 -0.79 7.87 16 33 H 0.06 1.75 7.96 -2.39 -0.02 1.73 16 34 H 0.06 1.75 7.91 -2.39 -0.02 1.73 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.12 2.98 6.69 -2.91 -0.02 2.96 16 41 H 0.14 2.32 6.16 -2.91 -0.02 2.30 16 Total: -1.00 -66.86 353.39 4.88 -61.98 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.24 Total: 15.15 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 4.57 Total: -24.73 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -1.65 Total: -75.01 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.31 Total: -22.54 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -66.86 4.88 -61.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.050 kcal (2) G-P(sol) polarization free energy of solvation -66.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds