Wall clock time and date at job start Tue Mar 31 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99841 * 2 1 4 4 C 1.53000 * 109.47317 * 124.99932 * 3 2 1 5 5 C 1.53001 * 109.47074 * 179.97438 * 4 3 2 6 6 N 1.46490 * 109.47085 * 180.02562 * 5 4 3 7 7 C 1.39152 * 120.00024 * 180.02562 * 6 5 4 8 8 C 1.39420 * 119.50233 * 359.97438 * 7 6 5 9 9 C 1.37797 * 121.19775 * 180.02562 * 8 7 6 10 10 C 1.39569 * 120.14221 * 0.02562 * 9 8 7 11 11 C 1.47014 * 120.48596 * 179.97438 * 10 9 8 12 12 O 1.21565 * 120.00114 * 174.33077 * 11 10 9 13 13 O 1.34842 * 120.00007 * 354.32810 * 11 10 9 14 14 C 1.45196 * 117.00221 * 180.02562 * 13 11 10 15 15 C 1.46539 * 119.02923 * 359.97438 * 10 9 8 16 16 C 1.40934 * 120.56785 * 179.97438 * 15 10 9 17 17 H 1.07996 * 120.00224 * 327.47781 * 16 15 10 18 18 C 1.40258 * 120.00087 * 147.75259 * 16 15 10 19 19 N 1.30638 * 119.99522 * 350.50489 * 18 16 15 20 20 Si 1.86799 * 120.00082 * 170.50430 * 18 16 15 21 21 H 1.48504 * 109.46922 * 60.00031 * 20 18 16 22 22 H 1.48500 * 109.47068 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47395 * 300.00196 * 20 18 16 24 24 C 1.38439 * 119.50167 * 180.25927 * 7 6 5 25 25 H 1.08006 * 120.00061 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00130 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00130 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47476 * 4.99454 * 3 2 1 29 29 H 1.09002 * 109.46795 * 244.99877 * 3 2 1 30 30 H 1.09000 * 109.46906 * 60.00017 * 4 3 2 31 31 H 1.08990 * 109.47486 * 299.99758 * 4 3 2 32 32 H 1.08996 * 109.47387 * 59.99511 * 5 4 3 33 33 H 1.09002 * 109.47147 * 300.00011 * 5 4 3 34 34 H 0.97005 * 120.00425 * 359.97438 * 6 5 4 35 35 H 1.07995 * 119.39643 * 359.97438 * 8 7 6 36 36 H 1.08001 * 119.92450 * 180.02562 * 9 8 7 37 37 H 1.09008 * 109.46645 * 300.00181 * 14 13 11 38 38 H 1.09002 * 109.47017 * 59.99544 * 14 13 11 39 39 H 1.09000 * 109.47346 * 180.02562 * 14 13 11 40 40 H 0.96999 * 119.99332 * 180.02562 * 19 18 16 41 41 H 1.08004 * 120.11748 * 0.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6580 1.1812 6 7 4.7310 2.6846 2.3122 7 6 5.5414 3.7965 2.5204 8 6 5.4595 4.8792 1.6458 9 6 6.2458 5.9975 1.8188 10 6 7.1461 6.0634 2.8832 11 6 7.9891 7.2526 3.0745 12 8 8.6945 7.3455 4.0603 13 8 7.9799 8.2403 2.1566 14 6 8.8375 9.3841 2.4104 15 6 7.2388 4.9300 3.8074 16 6 8.1372 4.9618 4.8928 17 1 9.0766 5.4867 4.8011 18 6 7.8138 4.3070 6.0903 19 7 6.6116 3.8278 6.2685 20 14 9.1020 4.1203 7.4301 21 1 9.5591 5.4637 7.8679 22 1 8.5129 3.3974 8.5858 23 1 10.2578 3.3520 6.9019 24 6 6.4211 3.8084 3.5893 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 3.7400 0.5066 1.0920 31 1 2.4773 1.2357 2.1130 32 1 3.0958 3.4847 1.2704 33 1 4.3582 2.7550 0.2498 34 1 4.7819 1.9274 2.9165 35 1 4.7678 4.8403 0.8174 36 1 6.1652 6.8247 1.1291 37 1 8.5470 9.8546 3.3498 38 1 9.8742 9.0537 2.4748 39 1 8.7346 10.1029 1.5974 40 1 6.3879 3.3752 7.0968 41 1 6.4765 2.9598 4.2551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170301380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:58 Heat of formation + Delta-G solvation = -58.633601 kcal Electronic energy + Delta-G solvation = -22028.028226 eV Core-core repulsion = 18679.641201 eV Total energy + Delta-G solvation = -3348.387026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.11176 -37.88069 -36.39682 -35.24890 -34.45377 -33.43324 -31.27059 -29.64854 -28.45568 -26.98347 -25.49180 -24.87995 -22.07736 -21.76083 -20.53997 -19.96772 -19.32211 -17.34290 -16.54153 -15.88890 -15.84554 -15.62078 -15.24024 -15.03086 -14.82363 -14.41443 -13.61742 -13.42749 -13.08361 -12.81585 -12.73690 -12.40407 -12.28658 -12.01574 -11.74534 -11.52110 -11.42779 -11.20526 -11.10633 -10.94716 -10.93034 -10.70823 -10.54377 -10.27431 -9.85549 -9.58688 -9.50721 -9.35218 -8.88512 -8.74535 -7.38634 -6.85223 -6.33092 -4.44859 2.09687 2.38540 2.88113 3.07560 3.13581 3.29379 3.86569 3.94966 4.06336 4.17419 4.67718 4.70264 4.86968 5.11868 5.27768 5.33059 5.57014 5.63865 5.66227 5.68404 5.74478 5.76186 5.87864 5.90994 6.14658 6.20933 6.22020 6.35607 6.44300 6.51806 6.59496 6.84455 6.99559 7.16838 7.25625 7.46855 7.59280 7.70264 7.86409 8.03875 8.40398 8.55118 8.69891 8.81378 8.93522 9.22357 10.11731 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.003979 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.984057 B = 7035.051708 C = 8914.679571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.092 4.092 4 C -0.126 4.126 5 C 0.132 3.868 6 N -0.756 5.756 7 C 0.243 3.757 8 C -0.305 4.305 9 C 0.002 3.998 10 C -0.288 4.288 11 C 0.505 3.495 12 O -0.524 6.524 13 O -0.376 6.376 14 C 0.041 3.959 15 C 0.184 3.816 16 C -0.415 4.415 17 H 0.103 0.897 18 C 0.072 3.928 19 N -0.782 5.782 20 Si 0.917 3.083 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.239 4.239 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.392 0.608 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.282 0.718 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.355 -3.919 -8.214 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.130 4.130 4 C -0.164 4.164 5 C 0.007 3.993 6 N -0.388 5.388 7 C 0.142 3.858 8 C -0.327 4.327 9 C -0.017 4.017 10 C -0.292 4.292 11 C 0.357 3.643 12 O -0.416 6.416 13 O -0.295 6.295 14 C -0.054 4.054 15 C 0.179 3.821 16 C -0.443 4.443 17 H 0.121 0.879 18 C -0.148 4.148 19 N -0.406 5.406 20 Si 0.741 3.259 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.263 4.263 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.225 0.775 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.398 -3.920 -7.927 10.915 hybrid contribution 0.461 -0.230 0.959 1.089 sum -5.936 -4.151 -6.968 10.051 Atomic orbital electron populations 1.23848 0.96007 1.01745 1.02057 1.22991 0.96025 0.98613 0.99107 1.20693 0.98146 0.95363 0.98777 1.21709 0.98030 0.97955 0.98673 1.21124 0.91631 0.96351 0.90172 1.44450 1.43606 1.19184 1.31511 1.17741 0.89039 0.85826 0.93241 1.19801 1.10734 0.97015 1.05176 1.20598 0.91948 0.95263 0.93855 1.19661 1.08528 0.94303 1.06711 1.21310 0.81017 0.82069 0.79923 1.90725 1.42022 1.79217 1.29614 1.86598 1.62999 1.29494 1.50420 1.22940 0.94097 0.86917 1.01412 1.18099 0.88367 0.87009 0.88641 1.20109 1.04291 1.24581 0.95343 0.87940 1.26126 0.95846 0.92484 1.00338 1.69755 1.18911 1.26095 1.25886 0.86216 0.81033 0.79695 0.78989 1.18591 1.20385 1.18679 1.20613 1.04669 1.00766 1.00249 0.88711 0.88592 0.87476 0.91257 0.90721 0.91452 0.91421 0.93070 0.93050 0.77468 0.88830 0.87950 0.92910 0.92914 0.89605 0.90691 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 14.32 29.01 0.42 -1.26 16 2 C -0.15 -1.34 9.52 -36.03 -0.34 -1.68 16 3 C -0.09 -0.87 5.66 -27.88 -0.16 -1.03 16 4 C -0.13 -1.39 5.31 -26.73 -0.14 -1.53 16 5 C 0.13 1.87 4.87 -4.05 -0.02 1.85 16 6 N -0.76 -13.43 5.71 -58.77 -0.34 -13.76 16 7 C 0.24 5.37 6.63 -84.02 -0.56 4.82 16 8 C -0.31 -6.59 9.24 -39.30 -0.36 -6.95 16 9 C 0.00 0.06 9.60 -39.25 -0.38 -0.32 16 10 C -0.29 -7.38 6.07 -102.50 -0.62 -8.00 16 11 C 0.51 12.57 7.85 34.29 0.27 12.84 16 12 O -0.52 -14.12 13.55 -19.31 -0.26 -14.38 16 13 O -0.38 -7.92 9.85 -40.88 -0.40 -8.33 16 14 C 0.04 0.67 10.57 101.05 1.07 1.74 16 15 C 0.18 4.97 5.67 -104.68 -0.59 4.37 16 16 C -0.42 -11.41 7.85 -37.80 -0.30 -11.71 16 17 H 0.10 2.91 5.97 -52.49 -0.31 2.59 16 18 C 0.07 1.82 5.26 -17.30 -0.09 1.73 16 19 N -0.78 -19.93 11.06 55.56 0.61 -19.31 16 20 Si 0.92 19.38 29.57 -169.99 -5.03 14.36 16 21 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.24 -5.98 8.46 -38.65 -0.33 -6.31 16 25 H 0.09 0.69 8.06 -52.48 -0.42 0.26 16 26 H 0.10 0.77 7.84 -52.49 -0.41 0.36 16 27 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.07 0.65 7.79 -51.93 -0.40 0.24 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.75 7.90 -51.93 -0.41 0.34 16 33 H 0.05 0.72 7.90 -51.93 -0.41 0.31 16 34 H 0.39 6.55 8.46 -40.82 -0.35 6.21 16 35 H 0.09 1.78 6.58 -52.49 -0.35 1.44 16 36 H 0.10 2.08 7.63 -52.49 -0.40 1.68 16 37 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.28 6.54 8.29 -40.82 -0.34 6.20 16 41 H 0.12 3.06 6.50 -52.48 -0.34 2.72 16 LS Contribution 347.75 15.07 5.24 5.24 Total: -1.00 -29.75 347.75 -8.21 -37.96 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.90 Total: 9.68 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -2.14 Total: -11.46 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.28 Total: -33.08 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.66 Total: -22.71 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.75 -8.21 -37.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170301380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.674 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds