Wall clock time and date at job start Tue Mar 31 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99841 * 2 1 4 4 C 1.53000 * 109.47317 * 124.99932 * 3 2 1 5 5 C 1.53001 * 109.47074 * 179.97438 * 4 3 2 6 6 N 1.46490 * 109.47085 * 180.02562 * 5 4 3 7 7 C 1.39152 * 120.00024 * 180.02562 * 6 5 4 8 8 C 1.39420 * 119.50233 * 359.97438 * 7 6 5 9 9 C 1.37797 * 121.19775 * 180.02562 * 8 7 6 10 10 C 1.39569 * 120.14221 * 0.02562 * 9 8 7 11 11 C 1.47014 * 120.48596 * 179.97438 * 10 9 8 12 12 O 1.21565 * 120.00114 * 174.33077 * 11 10 9 13 13 O 1.34842 * 120.00007 * 354.32810 * 11 10 9 14 14 C 1.45196 * 117.00221 * 180.02562 * 13 11 10 15 15 C 1.46539 * 119.02923 * 359.97438 * 10 9 8 16 16 C 1.40934 * 120.56785 * 179.97438 * 15 10 9 17 17 H 1.07996 * 120.00224 * 327.47781 * 16 15 10 18 18 C 1.40258 * 120.00087 * 147.75259 * 16 15 10 19 19 N 1.30638 * 119.99522 * 350.50489 * 18 16 15 20 20 Si 1.86799 * 120.00082 * 170.50430 * 18 16 15 21 21 H 1.48504 * 109.46922 * 60.00031 * 20 18 16 22 22 H 1.48500 * 109.47068 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47395 * 300.00196 * 20 18 16 24 24 C 1.38439 * 119.50167 * 180.25927 * 7 6 5 25 25 H 1.08006 * 120.00061 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00130 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00130 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47476 * 4.99454 * 3 2 1 29 29 H 1.09002 * 109.46795 * 244.99877 * 3 2 1 30 30 H 1.09000 * 109.46906 * 60.00017 * 4 3 2 31 31 H 1.08990 * 109.47486 * 299.99758 * 4 3 2 32 32 H 1.08996 * 109.47387 * 59.99511 * 5 4 3 33 33 H 1.09002 * 109.47147 * 300.00011 * 5 4 3 34 34 H 0.97005 * 120.00425 * 359.97438 * 6 5 4 35 35 H 1.07995 * 119.39643 * 359.97438 * 8 7 6 36 36 H 1.08001 * 119.92450 * 180.02562 * 9 8 7 37 37 H 1.09008 * 109.46645 * 300.00181 * 14 13 11 38 38 H 1.09002 * 109.47017 * 59.99544 * 14 13 11 39 39 H 1.09000 * 109.47346 * 180.02562 * 14 13 11 40 40 H 0.96999 * 119.99332 * 180.02562 * 19 18 16 41 41 H 1.08004 * 120.11748 * 0.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6580 1.1812 6 7 4.7310 2.6846 2.3122 7 6 5.5414 3.7965 2.5204 8 6 5.4595 4.8792 1.6458 9 6 6.2458 5.9975 1.8188 10 6 7.1461 6.0634 2.8832 11 6 7.9891 7.2526 3.0745 12 8 8.6945 7.3455 4.0603 13 8 7.9799 8.2403 2.1566 14 6 8.8375 9.3841 2.4104 15 6 7.2388 4.9300 3.8074 16 6 8.1372 4.9618 4.8928 17 1 9.0766 5.4867 4.8011 18 6 7.8138 4.3070 6.0903 19 7 6.6116 3.8278 6.2685 20 14 9.1020 4.1203 7.4301 21 1 9.5591 5.4637 7.8679 22 1 8.5129 3.3974 8.5858 23 1 10.2578 3.3520 6.9019 24 6 6.4211 3.8084 3.5893 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 3.7400 0.5066 1.0920 31 1 2.4773 1.2357 2.1130 32 1 3.0958 3.4847 1.2704 33 1 4.3582 2.7550 0.2498 34 1 4.7819 1.9274 2.9165 35 1 4.7678 4.8403 0.8174 36 1 6.1652 6.8247 1.1291 37 1 8.5470 9.8546 3.3498 38 1 9.8742 9.0537 2.4748 39 1 8.7346 10.1029 1.5974 40 1 6.3879 3.3752 7.0968 41 1 6.4765 2.9598 4.2551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170301380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:57 Heat of formation + Delta-G solvation = -74.594364 kcal Electronic energy + Delta-G solvation = -22028.720337 eV Core-core repulsion = 18679.641201 eV Total energy + Delta-G solvation = -3349.079136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.91871 -39.50897 -37.60521 -36.89897 -35.96011 -35.09561 -32.44764 -31.51309 -29.93982 -28.44363 -27.23127 -26.11190 -23.70028 -23.20968 -22.04740 -21.16475 -20.59096 -19.18129 -18.31889 -17.64530 -17.34695 -16.92177 -16.68585 -16.52829 -16.26865 -15.49133 -15.19421 -14.69255 -14.53486 -14.33957 -14.13871 -13.98765 -13.84166 -13.39156 -13.16706 -12.90622 -12.81513 -12.72229 -12.65738 -12.50925 -12.31571 -12.06089 -11.74359 -11.62681 -11.51861 -11.38900 -11.18101 -10.69892 -10.50472 -10.18172 -9.28372 -8.71628 -8.01882 -6.42785 0.51879 1.08541 1.34821 1.43723 1.46144 1.55686 2.17865 2.20773 2.23396 2.75067 2.82417 3.71851 3.87222 4.07067 4.29200 4.36924 4.41443 4.42890 4.46479 4.52468 4.54667 4.67665 4.73272 4.78662 4.83283 4.94374 5.06406 5.09675 5.14586 5.25742 5.28474 5.32745 5.48821 5.66756 5.78690 5.81840 5.91548 5.93264 6.07863 6.11145 6.53541 6.83294 6.86954 6.94165 7.13854 7.36916 8.26851 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.003979 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.984057 B = 7035.051708 C = 8914.679571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C -0.088 4.088 4 C -0.115 4.115 5 C 0.128 3.872 6 N -0.747 5.747 7 C 0.253 3.747 8 C -0.301 4.301 9 C 0.006 3.994 10 C -0.323 4.323 11 C 0.503 3.497 12 O -0.557 6.557 13 O -0.374 6.374 14 C 0.033 3.967 15 C 0.157 3.843 16 C -0.455 4.455 17 H 0.080 0.920 18 C 0.036 3.964 19 N -0.806 5.806 20 Si 0.980 3.020 21 H -0.273 1.273 22 H -0.257 1.257 23 H -0.257 1.257 24 C -0.265 4.265 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.396 0.604 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.134 0.866 40 H 0.291 0.709 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 -4.322 -9.690 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.180 4.180 3 C -0.125 4.125 4 C -0.153 4.153 5 C 0.004 3.996 6 N -0.377 5.377 7 C 0.148 3.852 8 C -0.322 4.322 9 C -0.013 4.013 10 C -0.327 4.327 11 C 0.356 3.644 12 O -0.452 6.452 13 O -0.292 6.292 14 C -0.060 4.060 15 C 0.153 3.847 16 C -0.483 4.483 17 H 0.098 0.902 18 C -0.181 4.181 19 N -0.431 5.431 20 Si 0.801 3.199 21 H -0.198 1.198 22 H -0.181 1.181 23 H -0.181 1.181 24 C -0.289 4.289 25 H 0.124 0.876 26 H 0.117 0.883 27 H 0.131 0.869 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.231 0.769 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.152 0.848 40 H 0.102 0.898 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.784 -4.348 -9.446 12.989 hybrid contribution 0.743 -0.061 1.223 1.432 sum -7.041 -4.409 -8.223 11.689 Atomic orbital electron populations 1.24025 0.96001 1.02481 1.01028 1.23042 0.96306 0.98605 1.00016 1.20649 0.97852 0.95848 0.98192 1.21613 0.98054 0.96242 0.99397 1.21368 0.91137 0.98249 0.88825 1.44628 1.42846 1.17882 1.32336 1.17849 0.88194 0.87129 0.91979 1.20170 1.10474 0.96106 1.05497 1.20885 0.90852 0.96370 0.93181 1.19966 1.10139 0.94711 1.07845 1.21328 0.80435 0.82703 0.79897 1.90696 1.43346 1.80050 1.31062 1.86543 1.63731 1.29938 1.49019 1.23357 0.93318 0.85918 1.03453 1.18479 0.88975 0.88122 0.89159 1.20112 1.04341 1.26766 0.97128 0.90157 1.26811 0.97741 0.91827 1.01726 1.69774 1.19938 1.26557 1.26867 0.85295 0.78710 0.79139 0.76796 1.19760 1.18075 1.18077 1.20511 1.06483 1.00213 1.01743 0.87635 0.88328 0.86881 0.91058 0.90020 0.90984 0.91764 0.92901 0.92269 0.76948 0.85517 0.85375 0.93139 0.92962 0.84769 0.89840 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.88 14.32 67.78 0.97 -1.91 16 2 C -0.16 -2.51 9.52 25.64 0.24 -2.27 16 3 C -0.09 -1.43 5.66 29.85 0.17 -1.26 16 4 C -0.12 -2.26 5.31 30.59 0.16 -2.10 16 5 C 0.13 3.27 4.87 86.38 0.42 3.69 16 6 N -0.75 -25.42 5.71 -339.85 -1.94 -27.36 16 7 C 0.25 11.02 6.63 38.31 0.25 11.28 16 8 C -0.30 -12.40 9.24 22.45 0.21 -12.19 16 9 C 0.01 0.27 9.60 22.49 0.22 0.49 16 10 C -0.32 -16.87 6.07 -18.49 -0.11 -16.98 16 11 C 0.50 25.64 7.85 70.12 0.55 26.20 16 12 O -0.56 -31.30 13.55 19.62 0.27 -31.03 16 13 O -0.37 -15.52 9.85 -57.55 -0.57 -16.09 16 14 C 0.03 1.03 10.57 113.37 1.20 2.23 16 15 C 0.16 8.85 5.67 -19.90 -0.11 8.73 16 16 C -0.46 -26.35 7.85 23.42 0.18 -26.17 16 17 H 0.08 4.87 5.97 -2.91 -0.02 4.85 16 18 C 0.04 1.88 5.26 85.36 0.45 2.33 16 19 N -0.81 -42.28 11.06 21.88 0.24 -42.04 16 20 Si 0.98 40.90 29.57 68.60 2.03 42.93 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 24 C -0.26 -13.63 8.46 22.87 0.19 -13.44 16 25 H 0.11 1.28 8.06 -2.91 -0.02 1.26 16 26 H 0.10 1.36 7.84 -2.91 -0.02 1.33 16 27 H 0.11 1.60 8.06 -2.91 -0.02 1.58 16 28 H 0.07 1.13 7.79 -2.38 -0.02 1.12 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.38 7.90 -2.39 -0.02 1.36 16 33 H 0.06 1.47 7.90 -2.39 -0.02 1.45 16 34 H 0.40 12.87 8.46 -92.70 -0.78 12.08 16 35 H 0.13 4.36 6.58 -2.91 -0.02 4.34 16 36 H 0.13 4.92 7.63 -2.91 -0.02 4.89 16 37 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.29 13.69 8.29 -92.71 -0.77 12.93 16 41 H 0.11 5.65 6.50 -2.91 -0.02 5.63 16 Total: -1.00 -67.19 347.75 5.27 -61.92 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.25 Total: 33.04 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 4.99 Total: -21.36 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -1.70 Total: -69.40 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -0.30 Total: -47.12 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -67.19 5.27 -61.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170301380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.675 kcal (2) G-P(sol) polarization free energy of solvation -67.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds