Wall clock time and date at job start Tue Mar 31 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00335 * 2 1 4 4 O 1.20827 * 119.99507 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00251 * 179.97438 * 3 2 1 6 6 C 1.50695 * 109.47335 * 180.02562 * 5 3 2 7 7 C 1.38264 * 119.99992 * 270.02339 * 6 5 3 8 8 C 1.38217 * 120.00043 * 179.97438 * 7 6 5 9 9 C 1.38261 * 119.99839 * 359.74834 * 8 7 6 10 10 C 1.38211 * 119.99906 * 0.50381 * 9 8 7 11 11 C 1.50702 * 120.00145 * 179.76486 * 10 9 8 12 12 N 1.46902 * 109.47215 * 269.73164 * 11 10 9 13 13 C 1.47961 * 111.00005 * 169.99576 * 12 11 10 14 14 C 1.53934 * 86.17939 * 137.58072 * 13 12 11 15 15 C 1.50703 * 113.73399 * 221.81705 * 14 13 12 16 16 H 1.07999 * 119.99920 * 358.09577 * 15 14 13 17 17 C 1.37877 * 119.99669 * 178.10223 * 15 14 13 18 18 N 1.31510 * 120.00506 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99624 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47263 * 89.99888 * 19 17 15 21 21 H 1.48497 * 109.47123 * 209.99934 * 19 17 15 22 22 H 1.48502 * 109.47383 * 330.00011 * 19 17 15 23 23 C 1.48296 * 111.00409 * 269.34877 * 12 11 10 24 24 C 1.38217 * 120.00160 * 90.00021 * 6 5 3 25 25 H 1.09004 * 109.46536 * 60.00164 * 1 2 3 26 26 H 1.09003 * 109.47418 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47419 * 300.00360 * 1 2 3 28 28 H 1.09003 * 109.47186 * 60.00007 * 5 3 2 29 29 H 1.09004 * 109.47057 * 300.00118 * 5 3 2 30 30 H 1.07994 * 119.99873 * 359.97438 * 7 6 5 31 31 H 1.07996 * 119.99929 * 180.02562 * 8 7 6 32 32 H 1.07994 * 119.99891 * 180.27605 * 9 8 7 33 33 H 1.09001 * 109.47251 * 149.72740 * 11 10 9 34 34 H 1.09004 * 109.46551 * 29.73106 * 11 10 9 35 35 H 1.09007 * 113.75652 * 23.26342 * 13 12 11 36 36 H 1.08993 * 113.76177 * 251.90248 * 13 12 11 37 37 H 1.09002 * 113.73279 * 90.64057 * 14 13 12 38 38 H 0.96995 * 120.00309 * 180.02562 * 18 17 15 39 39 H 1.09001 * 113.86054 * 108.14174 * 23 12 11 40 40 H 1.09000 * 113.76062 * 336.68481 * 23 12 11 41 41 H 1.08000 * 119.99748 * 0.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 3.9937 2.7198 0.0011 7 6 4.1897 3.3832 -1.1961 8 6 4.5812 4.7088 -1.1956 9 6 4.7717 5.3729 0.0020 10 6 4.5808 4.7083 1.1987 11 6 4.7935 5.4306 2.5041 12 7 6.1910 5.2731 2.9288 13 6 6.5005 6.1587 4.0730 14 6 7.2592 4.9573 4.6650 15 6 7.0390 4.7699 6.1441 16 1 6.4211 5.4669 6.6906 17 6 7.6266 3.7086 6.7994 18 7 8.3795 2.8602 6.1341 19 14 7.3542 3.4767 8.6329 20 1 6.1561 2.6271 8.8518 21 1 8.5436 2.8187 9.2307 22 1 7.1463 4.8001 9.2738 23 6 6.3538 4.0747 3.7871 24 6 4.1892 3.3823 1.1983 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.9564 0.7804 -0.8892 29 1 3.9557 0.7808 0.8908 30 1 4.0370 2.8656 -2.1315 31 1 4.7339 5.2270 -2.1307 32 1 5.0732 6.4099 0.0024 33 1 4.1335 5.0110 3.2633 34 1 4.5705 6.4896 2.3738 35 1 5.6239 6.4525 4.6506 36 1 7.1432 7.0005 3.8155 37 1 8.3119 4.9218 4.3844 38 1 8.7925 2.1134 6.5951 39 1 6.8795 3.2527 3.3013 40 1 5.4346 3.7602 4.2812 41 1 4.0362 2.8641 2.1334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237476614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:04 Heat of formation + Delta-G solvation = -31.601033 kcal Electronic energy + Delta-G solvation = -22224.773708 eV Core-core repulsion = 18877.558903 eV Total energy + Delta-G solvation = -3347.214806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.68356 -39.41027 -38.26728 -36.59049 -33.52855 -32.63130 -31.64466 -29.04228 -28.33634 -26.93976 -25.52613 -24.90877 -22.75908 -22.33654 -21.25200 -19.93038 -18.55305 -17.77888 -16.84668 -16.73049 -16.54696 -16.15192 -15.33082 -14.91232 -14.83760 -14.27690 -13.97156 -13.79599 -13.74885 -13.35819 -13.08445 -12.62342 -12.36384 -12.18009 -12.17485 -11.82531 -11.74325 -11.35472 -11.04178 -10.99582 -10.95752 -10.80328 -10.63790 -10.55057 -10.26171 -9.72730 -9.29876 -9.01683 -8.63551 -8.50573 -8.34153 -7.87197 -6.05273 -4.09935 1.42221 1.60467 2.08463 2.63890 3.28006 3.35313 3.38334 3.94233 4.40216 4.51109 4.76580 4.83415 4.87617 4.94868 5.00179 5.11989 5.20632 5.23815 5.28331 5.29631 5.38930 5.55982 5.70405 5.78095 5.90746 6.10361 6.17936 6.24409 6.26372 6.37327 6.49203 6.61591 6.63973 6.65550 6.78751 6.88229 7.15543 7.16930 7.26244 7.61353 7.73054 7.91021 8.07957 8.36791 8.92557 9.55006 11.04065 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.003738 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.047796 B = 7489.233581 C = 8743.413644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.460 3.540 4 O -0.497 6.497 5 C -0.071 4.071 6 C -0.084 4.084 7 C -0.112 4.112 8 C -0.122 4.122 9 C -0.099 4.099 10 C -0.055 4.055 11 C 0.056 3.944 12 N -0.485 5.485 13 C -0.003 4.003 14 C 0.039 3.961 15 C -0.519 4.519 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.015 3.985 24 C -0.091 4.091 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.261 0.739 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.849 -3.592 -14.614 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.303 3.697 4 O -0.383 6.383 5 C -0.108 4.108 6 C -0.084 4.084 7 C -0.130 4.130 8 C -0.140 4.140 9 C -0.117 4.117 10 C -0.056 4.056 11 C -0.073 4.073 12 N -0.207 5.207 13 C -0.131 4.131 14 C 0.020 3.980 15 C -0.557 4.557 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.113 4.113 24 C -0.109 4.109 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.618 -3.387 -15.199 19.428 hybrid contribution -0.981 -0.297 1.655 1.947 sum -12.598 -3.684 -13.544 18.861 Atomic orbital electron populations 1.23247 0.76451 1.03560 1.02558 1.86508 1.23381 1.33679 1.84401 1.23810 0.92062 0.81294 0.72583 1.90699 1.67034 1.36259 1.44286 1.20305 0.87513 0.96215 1.06772 1.19111 1.01806 0.93564 0.93918 1.20834 1.00435 0.94969 0.96741 1.21008 1.00580 0.94562 0.97867 1.21022 0.98917 0.99989 0.91817 1.19789 0.96841 0.93773 0.95182 1.21609 0.93316 0.99066 0.93283 1.68615 1.17648 1.06513 1.27962 1.24084 0.99700 0.98066 0.91269 1.20299 0.95345 0.88333 0.93995 1.21102 1.30600 1.10910 0.93118 0.92486 1.25003 0.94621 0.95946 0.98029 1.69964 1.31791 1.14627 1.35947 0.86638 0.77694 0.78335 0.85595 1.20695 1.21139 1.19846 1.24161 1.00037 0.93676 0.93476 1.20889 0.98640 0.94280 0.97110 0.92011 0.88165 0.91862 0.86810 0.86518 0.86640 0.86270 0.86176 0.93448 0.91117 0.92705 0.91581 0.92341 0.92893 0.91470 0.92857 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.91 10.56 -39.24 -0.41 -4.33 16 3 C 0.46 5.68 7.95 36.00 0.29 5.97 16 4 O -0.50 -7.70 15.78 -18.75 -0.30 -7.99 16 5 C -0.07 -0.76 5.94 -29.04 -0.17 -0.93 16 6 C -0.08 -1.14 4.37 -104.62 -0.46 -1.60 16 7 C -0.11 -1.42 9.70 -39.58 -0.38 -1.81 16 8 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 9 C -0.10 -1.45 9.70 -39.58 -0.38 -1.83 16 10 C -0.06 -0.91 5.44 -104.62 -0.57 -1.47 16 11 C 0.06 0.97 4.93 -4.97 -0.02 0.95 16 12 N -0.48 -9.87 6.15 -239.48 -1.47 -11.35 16 13 C 0.00 -0.06 7.50 -2.76 -0.02 -0.08 16 14 C 0.04 0.98 3.60 -90.84 -0.33 0.66 16 15 C -0.52 -14.08 8.77 -34.44 -0.30 -14.38 16 16 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 17 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 18 N -0.89 -25.37 13.29 55.43 0.74 -24.64 16 19 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.02 0.35 7.53 -2.57 -0.02 0.33 16 24 C -0.09 -1.43 9.36 -39.58 -0.37 -1.80 16 25 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.11 0.91 8.09 -51.93 -0.42 0.49 16 29 H 0.12 1.12 8.08 -51.93 -0.42 0.70 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.05 0.85 7.33 -51.93 -0.38 0.47 16 34 H 0.07 1.13 8.02 -51.93 -0.42 0.71 16 35 H 0.05 1.12 7.88 -51.92 -0.41 0.71 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 39 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 40 H 0.05 1.23 7.43 -51.93 -0.39 0.85 16 41 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 351.51 15.07 5.30 5.30 Total: -1.00 -31.30 351.51 -9.55 -40.85 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.20 Total: 1.09 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.17 Total: -14.90 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.74 Total: -35.98 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.71 Total: -12.32 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.30 -9.55 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237476614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.249 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds