Wall clock time and date at job start Tue Mar 31 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00335 * 2 1 4 4 O 1.20827 * 119.99507 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00251 * 179.97438 * 3 2 1 6 6 C 1.50695 * 109.47335 * 180.02562 * 5 3 2 7 7 C 1.38264 * 119.99992 * 270.02339 * 6 5 3 8 8 C 1.38217 * 120.00043 * 179.97438 * 7 6 5 9 9 C 1.38261 * 119.99839 * 359.74834 * 8 7 6 10 10 C 1.38211 * 119.99906 * 0.50381 * 9 8 7 11 11 C 1.50702 * 120.00145 * 179.76486 * 10 9 8 12 12 N 1.46902 * 109.47215 * 269.73164 * 11 10 9 13 13 C 1.47961 * 111.00005 * 169.99576 * 12 11 10 14 14 C 1.53934 * 86.17939 * 137.58072 * 13 12 11 15 15 C 1.50703 * 113.73399 * 221.81705 * 14 13 12 16 16 H 1.07999 * 119.99920 * 358.09577 * 15 14 13 17 17 C 1.37877 * 119.99669 * 178.10223 * 15 14 13 18 18 N 1.31510 * 120.00506 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99624 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47263 * 89.99888 * 19 17 15 21 21 H 1.48497 * 109.47123 * 209.99934 * 19 17 15 22 22 H 1.48502 * 109.47383 * 330.00011 * 19 17 15 23 23 C 1.48296 * 111.00409 * 269.34877 * 12 11 10 24 24 C 1.38217 * 120.00160 * 90.00021 * 6 5 3 25 25 H 1.09004 * 109.46536 * 60.00164 * 1 2 3 26 26 H 1.09003 * 109.47418 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47419 * 300.00360 * 1 2 3 28 28 H 1.09003 * 109.47186 * 60.00007 * 5 3 2 29 29 H 1.09004 * 109.47057 * 300.00118 * 5 3 2 30 30 H 1.07994 * 119.99873 * 359.97438 * 7 6 5 31 31 H 1.07996 * 119.99929 * 180.02562 * 8 7 6 32 32 H 1.07994 * 119.99891 * 180.27605 * 9 8 7 33 33 H 1.09001 * 109.47251 * 149.72740 * 11 10 9 34 34 H 1.09004 * 109.46551 * 29.73106 * 11 10 9 35 35 H 1.09007 * 113.75652 * 23.26342 * 13 12 11 36 36 H 1.08993 * 113.76177 * 251.90248 * 13 12 11 37 37 H 1.09002 * 113.73279 * 90.64057 * 14 13 12 38 38 H 0.96995 * 120.00309 * 180.02562 * 18 17 15 39 39 H 1.09001 * 113.86054 * 108.14174 * 23 12 11 40 40 H 1.09000 * 113.76062 * 336.68481 * 23 12 11 41 41 H 1.08000 * 119.99748 * 0.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 3.9937 2.7198 0.0011 7 6 4.1897 3.3832 -1.1961 8 6 4.5812 4.7088 -1.1956 9 6 4.7717 5.3729 0.0020 10 6 4.5808 4.7083 1.1987 11 6 4.7935 5.4306 2.5041 12 7 6.1910 5.2731 2.9288 13 6 6.5005 6.1587 4.0730 14 6 7.2592 4.9573 4.6650 15 6 7.0390 4.7699 6.1441 16 1 6.4211 5.4669 6.6906 17 6 7.6266 3.7086 6.7994 18 7 8.3795 2.8602 6.1341 19 14 7.3542 3.4767 8.6329 20 1 6.1561 2.6271 8.8518 21 1 8.5436 2.8187 9.2307 22 1 7.1463 4.8001 9.2738 23 6 6.3538 4.0747 3.7871 24 6 4.1892 3.3823 1.1983 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.9564 0.7804 -0.8892 29 1 3.9557 0.7808 0.8908 30 1 4.0370 2.8656 -2.1315 31 1 4.7339 5.2270 -2.1307 32 1 5.0732 6.4099 0.0024 33 1 4.1335 5.0110 3.2633 34 1 4.5705 6.4896 2.3738 35 1 5.6239 6.4525 4.6506 36 1 7.1432 7.0005 3.8155 37 1 8.3119 4.9218 4.3844 38 1 8.7925 2.1134 6.5951 39 1 6.8795 3.2527 3.3013 40 1 5.4346 3.7602 4.2812 41 1 4.0362 2.8641 2.1334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237476614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:03 Heat of formation + Delta-G solvation = -50.099544 kcal Electronic energy + Delta-G solvation = -22225.575864 eV Core-core repulsion = 18877.558903 eV Total energy + Delta-G solvation = -3348.016961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.63413 -40.76728 -39.68858 -37.53129 -35.00604 -34.20509 -32.93172 -30.24904 -29.62343 -27.79100 -27.26040 -26.69822 -24.37321 -23.35103 -22.36303 -21.05639 -20.42192 -18.69651 -18.62913 -17.72658 -17.60155 -17.16807 -16.76874 -16.50222 -16.26390 -15.84708 -15.57090 -15.01993 -14.60262 -14.42242 -14.11829 -13.97799 -13.90955 -13.44166 -13.27013 -13.10277 -13.04363 -12.94353 -12.86287 -12.45602 -12.27456 -12.07429 -11.82314 -11.81135 -11.62150 -11.48248 -11.17387 -10.95385 -10.53111 -9.73717 -9.63177 -9.50045 -8.14933 -6.26688 0.36864 0.50109 1.15055 1.41627 1.42697 1.53082 1.81252 2.41965 2.84015 3.14420 3.37520 3.57370 3.81985 3.90965 4.01513 4.17512 4.23054 4.29348 4.29477 4.34315 4.35799 4.48779 4.54606 4.57371 4.62817 4.69103 4.73497 4.78329 4.86042 4.98099 5.10320 5.15429 5.22902 5.35600 5.44925 5.58235 5.59559 5.62961 5.77721 5.85215 6.12295 6.29527 6.35557 6.70582 6.81909 7.41745 8.94424 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.003738 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.047796 B = 7489.233581 C = 8743.413644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.464 3.536 4 O -0.535 6.535 5 C -0.070 4.070 6 C -0.089 4.089 7 C -0.112 4.112 8 C -0.121 4.121 9 C -0.110 4.110 10 C -0.080 4.080 11 C 0.059 3.941 12 N -0.480 5.480 13 C 0.011 3.989 14 C 0.022 3.978 15 C -0.535 4.535 16 H 0.058 0.942 17 C 0.016 3.984 18 N -0.920 5.920 19 Si 0.956 3.044 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.266 1.266 23 C 0.030 3.970 24 C -0.114 4.114 25 H 0.063 0.937 26 H 0.132 0.868 27 H 0.055 0.945 28 H 0.148 0.852 29 H 0.125 0.875 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.131 0.869 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.808 -3.832 -15.774 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.308 3.692 4 O -0.424 6.424 5 C -0.107 4.107 6 C -0.089 4.089 7 C -0.130 4.130 8 C -0.139 4.139 9 C -0.129 4.129 10 C -0.081 4.081 11 C -0.069 4.069 12 N -0.203 5.203 13 C -0.117 4.117 14 C 0.003 3.997 15 C -0.573 4.573 16 H 0.076 0.924 17 C -0.183 4.183 18 N -0.558 5.558 19 Si 0.781 3.219 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.190 1.190 23 C -0.099 4.099 24 C -0.133 4.133 25 H 0.082 0.918 26 H 0.151 0.849 27 H 0.074 0.926 28 H 0.166 0.834 29 H 0.143 0.857 30 H 0.164 0.836 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.585 -3.630 -16.364 20.960 hybrid contribution -0.726 -0.251 1.929 2.077 sum -13.311 -3.881 -14.434 20.015 Atomic orbital electron populations 1.23528 0.74973 1.05653 1.02340 1.86502 1.24869 1.32756 1.83860 1.24057 0.92549 0.81125 0.71423 1.90685 1.67929 1.37476 1.46299 1.20405 0.86618 0.94846 1.08802 1.19408 1.00993 0.94979 0.93488 1.21277 0.99037 0.95119 0.97603 1.21403 0.99225 0.94819 0.98444 1.21229 0.99097 1.00681 0.91858 1.19778 0.98882 0.94282 0.95140 1.21589 0.91001 1.00359 0.93908 1.68548 1.20100 1.04745 1.26877 1.23960 0.99461 0.97237 0.91066 1.20277 0.94186 0.91588 0.93699 1.21436 1.30543 1.10979 0.94355 0.92389 1.25801 0.94364 0.95647 1.02521 1.70086 1.32797 1.15200 1.37742 0.85591 0.77651 0.78485 0.80152 1.20103 1.20830 1.19044 1.23834 0.98928 0.93806 0.93353 1.20964 1.00065 0.94520 0.97708 0.91787 0.84946 0.92599 0.83428 0.85735 0.83554 0.83222 0.85095 0.94376 0.89374 0.91947 0.90003 0.95632 0.92829 0.93303 0.93559 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.36 -7.28 10.56 -51.35 -0.54 -7.82 16 3 C 0.46 10.93 7.95 71.23 0.57 11.49 16 4 O -0.53 -16.33 15.78 21.96 0.35 -15.99 16 5 C -0.07 -1.38 5.94 29.10 0.17 -1.21 16 6 C -0.09 -2.31 4.37 -19.86 -0.09 -2.40 16 7 C -0.11 -2.58 9.70 22.27 0.22 -2.37 16 8 C -0.12 -2.84 10.05 22.27 0.22 -2.62 16 9 C -0.11 -3.08 9.70 22.27 0.22 -2.86 16 10 C -0.08 -2.62 5.44 -19.87 -0.11 -2.73 16 11 C 0.06 2.08 4.93 85.56 0.42 2.50 16 12 N -0.48 -19.71 6.15 -911.59 -5.61 -25.31 16 13 C 0.01 0.47 7.50 86.41 0.65 1.12 16 14 C 0.02 1.11 3.60 -10.89 -0.04 1.07 16 15 C -0.53 -29.47 8.77 25.60 0.22 -29.25 16 16 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 17 C 0.02 0.90 5.46 84.66 0.46 1.36 16 18 N -0.92 -53.87 13.29 21.45 0.28 -53.59 16 19 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.03 1.42 7.53 86.34 0.65 2.07 16 24 C -0.11 -3.62 9.36 22.27 0.21 -3.41 16 25 H 0.06 0.92 8.13 -2.38 -0.02 0.90 16 26 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 28 H 0.15 1.88 8.09 -2.39 -0.02 1.86 16 29 H 0.12 2.27 8.08 -2.39 -0.02 2.25 16 30 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 33 H 0.04 1.39 7.33 -2.39 -0.02 1.37 16 34 H 0.09 2.73 8.02 -2.39 -0.02 2.72 16 35 H 0.06 2.52 7.88 -2.38 -0.02 2.50 16 36 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 39 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.05 2.23 7.43 -2.39 -0.02 2.21 16 41 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -68.51 351.51 2.49 -66.03 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.01 Total: 16.99 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 4.97 Total: -25.62 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -5.32 Total: -78.90 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.20 Total: -23.80 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -68.51 2.49 -66.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237476614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.926 kcal (2) G-P(sol) polarization free energy of solvation -68.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds