Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 110.53894 * 2 1 4 4 O 1.42101 * 110.54200 * 223.25379 * 2 1 3 5 5 N 1.65602 * 104.44762 * 111.62597 * 2 1 3 6 6 C 1.46500 * 119.99912 * 90.00382 * 5 2 1 7 7 C 1.50706 * 109.46953 * 94.99228 * 6 5 2 8 8 H 1.07999 * 120.00193 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99398 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99350 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00608 * 0.02562 * 9 7 6 12 12 H 1.48493 * 109.47326 * 270.00340 * 11 9 7 13 13 H 1.48506 * 109.46545 * 30.00090 * 11 9 7 14 14 H 1.48498 * 109.47210 * 149.99801 * 11 9 7 15 15 C 1.46495 * 120.00128 * 269.99540 * 5 2 1 16 16 C 1.53013 * 109.47453 * 240.00797 * 15 5 2 17 17 C 1.52993 * 109.45994 * 164.04829 * 16 15 5 18 18 C 1.52979 * 109.50933 * 315.98763 * 17 16 15 19 19 C 1.53000 * 109.47155 * 112.93751 * 18 17 16 20 20 C 1.53005 * 109.43304 * 284.03951 * 19 18 17 21 21 C 1.52986 * 109.48193 * 75.96028 * 20 19 18 22 22 C 1.52990 * 109.50548 * 247.06373 * 21 20 19 23 23 H 1.09001 * 109.47296 * 316.74616 * 1 2 3 24 24 H 1.08999 * 109.47530 * 76.75022 * 1 2 3 25 25 H 1.09007 * 109.46820 * 196.74828 * 1 2 3 26 26 H 1.09000 * 109.47175 * 334.99657 * 6 5 2 27 27 H 1.08993 * 109.47452 * 214.99447 * 6 5 2 28 28 H 0.97005 * 119.99661 * 179.97438 * 10 9 7 29 29 H 1.09004 * 109.47341 * 0.02562 * 15 5 2 30 30 H 1.09006 * 109.46860 * 284.04028 * 16 15 5 31 31 H 1.08997 * 109.47500 * 44.04647 * 16 15 5 32 32 H 1.08994 * 109.46184 * 195.97443 * 17 16 15 33 33 H 1.08996 * 109.45676 * 75.99633 * 17 16 15 34 34 H 1.08999 * 109.47122 * 352.93459 * 18 17 16 35 35 H 1.09003 * 109.47051 * 232.93730 * 18 17 16 36 36 H 1.09005 * 109.47810 * 164.05418 * 19 18 17 37 37 H 1.09002 * 109.48114 * 44.02902 * 19 18 17 38 38 H 1.08996 * 109.46830 * 315.95712 * 20 19 18 39 39 H 1.09003 * 109.46836 * 195.96540 * 20 19 18 40 40 H 1.09007 * 109.46155 * 127.05729 * 21 20 19 41 41 H 1.09000 * 109.46550 * 7.08027 * 21 20 19 42 42 H 1.08998 * 109.47512 * 284.01764 * 22 21 20 43 43 H 1.09003 * 109.47361 * 164.01170 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9118 5 7 2.2272 -0.5910 1.4908 6 6 2.4100 -2.0319 1.6826 7 6 3.8702 -2.3764 1.5392 8 1 4.5900 -1.5997 1.3270 9 6 4.2871 -3.6831 1.6801 10 7 5.5614 -3.9836 1.5556 11 14 3.0423 -5.0263 2.0480 12 1 2.8952 -5.1759 3.5180 13 1 1.7309 -4.6620 1.4538 14 1 3.5109 -6.3089 1.4643 15 6 2.4101 0.3269 2.6177 16 6 3.8394 0.2033 3.1496 17 6 4.1588 1.4075 4.0376 18 6 3.6550 2.6860 3.3653 19 6 2.5060 3.2751 4.1860 20 6 1.2362 2.4562 3.9450 21 6 1.3249 1.1382 4.7167 22 6 1.4198 -0.0265 3.7293 23 1 -0.3634 0.7485 0.7042 24 1 -0.3634 0.2355 -1.0003 25 1 -0.3633 -0.9841 0.2962 26 1 1.8336 -2.5742 0.9331 27 1 2.0666 -2.3124 2.6782 28 1 5.8548 -4.9029 1.6551 29 1 2.2330 1.3499 2.2856 30 1 3.9321 -0.7130 3.7328 31 1 4.5373 0.1736 2.3129 32 1 5.2367 1.4748 4.1845 33 1 3.6675 1.2871 5.0031 34 1 3.3020 2.4533 2.3607 35 1 4.4678 3.4099 3.3062 36 1 2.3352 4.3081 3.8829 37 1 2.7626 3.2446 5.2449 38 1 1.1351 2.2475 2.8800 39 1 0.3692 3.0206 4.2885 40 1 0.4351 1.0187 5.3350 41 1 2.2102 1.1485 5.3525 42 1 0.4381 -0.2155 3.2948 43 1 1.7637 -0.9190 4.2520 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252678140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = -67.586013 kcal Electronic energy + Delta-G solvation = -23656.578907 eV Core-core repulsion = 20443.247626 eV Total energy + Delta-G solvation = -3213.331280 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.39508 -36.53110 -35.51050 -35.24046 -32.60952 -32.41043 -31.05124 -29.20241 -27.81066 -25.61325 -25.23834 -22.37810 -21.27231 -20.42094 -19.18124 -18.08859 -17.28386 -16.78519 -15.90984 -15.70773 -14.98508 -14.54242 -14.18584 -13.93951 -13.84549 -13.67946 -13.12553 -13.01376 -12.91017 -12.74942 -12.54442 -12.13341 -11.84200 -11.65924 -11.48781 -11.32568 -11.24808 -11.07279 -10.90970 -10.76404 -10.69448 -10.58483 -10.49707 -10.33984 -10.13452 -10.08926 -9.61134 -9.43456 -9.16606 -8.53340 -8.02349 -6.01716 -3.98589 0.77911 3.24542 3.27704 3.35096 3.38453 4.42047 4.43548 4.56738 4.78274 4.97794 5.01409 5.03022 5.24643 5.28396 5.34487 5.39975 5.46130 5.49840 5.59424 5.62995 5.78337 5.82345 5.86879 5.99833 6.13357 6.19687 6.23008 6.29319 6.34476 6.40064 6.46262 6.56093 6.69251 6.73020 6.77766 6.96338 7.10628 7.26548 7.47917 7.64889 8.56652 9.06310 9.57892 11.11718 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.007650 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.946723 B = 3659.149857 C = 4418.480502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.687 4.687 2 S 2.600 3.400 3 O -0.970 6.970 4 O -0.936 6.936 5 N -0.977 5.977 6 C 0.225 3.775 7 C -0.517 4.517 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.897 5.897 11 Si 0.868 3.132 12 H -0.277 1.277 13 H -0.266 1.266 14 H -0.285 1.285 15 C 0.138 3.862 16 C -0.113 4.113 17 C -0.127 4.127 18 C -0.138 4.138 19 C -0.116 4.116 20 C -0.132 4.132 21 C -0.126 4.126 22 C -0.131 4.131 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.124 0.876 26 H 0.031 0.969 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.296 11.387 5.351 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.834 4.834 2 S 2.691 3.309 3 O -0.960 6.960 4 O -0.926 6.926 5 N -0.814 5.814 6 C 0.102 3.898 7 C -0.556 4.556 8 H 0.101 0.899 9 C -0.131 4.131 10 N -0.536 5.536 11 Si 0.695 3.305 12 H -0.203 1.203 13 H -0.191 1.191 14 H -0.211 1.211 15 C 0.032 3.968 16 C -0.152 4.152 17 C -0.164 4.164 18 C -0.175 4.175 19 C -0.154 4.154 20 C -0.169 4.169 21 C -0.163 4.163 22 C -0.170 4.170 23 H 0.138 0.862 24 H 0.137 0.863 25 H 0.143 0.857 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.126 0.874 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.616 11.473 4.642 16.306 hybrid contribution -1.250 -1.129 0.490 1.754 sum -11.866 10.344 5.133 16.557 Atomic orbital electron populations 1.30777 1.31472 1.10988 1.10206 1.05157 0.77241 0.74091 0.74376 1.93531 1.77359 1.38676 1.86466 1.93649 1.76147 1.60685 1.62164 1.57364 1.82563 1.15874 1.25577 1.19422 0.98528 0.75072 0.96812 1.21404 0.91443 0.94675 1.48081 0.89925 1.24857 0.94918 0.98208 0.95090 1.69893 1.14322 1.19087 1.50289 0.86986 0.82434 0.82408 0.78639 1.20274 1.19100 1.21098 1.21402 0.95852 0.93200 0.86306 1.21897 0.95653 0.97652 1.00045 1.21895 1.00497 0.94743 0.99306 1.21930 0.97643 0.97166 1.00774 1.21693 0.95222 0.98510 0.99974 1.21868 0.97607 0.96227 1.01227 1.21850 1.02045 0.94225 0.98212 1.22044 0.99191 0.98714 0.97091 0.86155 0.86349 0.85702 0.95163 0.95273 0.92732 0.87418 0.90434 0.90719 0.92454 0.91478 0.89849 0.92615 0.92618 0.92077 0.91096 0.92594 0.92539 0.90512 0.92330 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.69 -8.41 10.99 101.05 1.11 -7.30 16 2 S 2.60 46.57 6.00 -107.50 -0.65 45.93 16 3 O -0.97 -18.56 16.57 -57.54 -0.95 -19.51 16 4 O -0.94 -21.15 16.99 -57.54 -0.98 -22.13 16 5 N -0.98 -18.48 2.66 -108.56 -0.29 -18.77 16 6 C 0.22 5.00 3.78 -5.19 -0.02 4.98 16 7 C -0.52 -14.06 8.57 -34.44 -0.30 -14.36 16 8 H 0.08 2.47 6.74 -52.49 -0.35 2.12 16 9 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 11 Si 0.87 20.79 27.47 -169.99 -4.67 16.12 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.14 2.27 1.86 -67.92 -0.13 2.14 16 16 C -0.11 -2.02 3.85 -26.73 -0.10 -2.13 16 17 C -0.13 -1.81 5.48 -26.75 -0.15 -1.95 16 18 C -0.14 -1.84 5.47 -26.74 -0.15 -1.98 16 19 C -0.12 -1.28 5.59 -26.73 -0.15 -1.43 16 20 C -0.13 -1.45 5.47 -26.74 -0.15 -1.60 16 21 C -0.13 -1.43 5.48 -26.74 -0.15 -1.57 16 22 C -0.13 -1.81 4.58 -26.73 -0.12 -1.93 16 23 H 0.12 1.21 8.14 -51.92 -0.42 0.79 16 24 H 0.12 1.22 8.14 -51.92 -0.42 0.80 16 25 H 0.12 1.43 8.14 -51.92 -0.42 1.01 16 26 H 0.03 0.68 6.67 -51.93 -0.35 0.34 16 27 H 0.03 0.61 6.27 -51.93 -0.33 0.28 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.11 1.67 1.56 -51.93 -0.08 1.59 16 30 H 0.08 1.51 7.52 -51.93 -0.39 1.12 16 31 H 0.07 1.57 6.97 -51.93 -0.36 1.20 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.86 4.69 -51.93 -0.24 0.61 16 34 H 0.08 1.28 5.47 -51.93 -0.28 1.00 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.62 7.47 -51.93 -0.39 0.23 16 38 H 0.07 0.85 5.47 -51.93 -0.28 0.56 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.08 0.87 4.69 -51.93 -0.24 0.63 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 1.08 7.14 -51.93 -0.37 0.71 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -32.87 323.25 -8.92 -41.79 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.64 Total: 3.33 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -0.39 Total: -25.21 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.48 Total: -45.20 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.93 Total: -41.64 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Atomic # 16 Polarization: 46.57 SS G_CDS: -0.65 Total: 45.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.87 -8.92 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252678140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.791 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds