Wall clock time and date at job start Tue Mar 31 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 110.53894 * 2 1 4 4 O 1.42101 * 110.54200 * 223.25379 * 2 1 3 5 5 N 1.65602 * 104.44762 * 111.62597 * 2 1 3 6 6 C 1.46500 * 119.99912 * 90.00382 * 5 2 1 7 7 C 1.50706 * 109.46953 * 94.99228 * 6 5 2 8 8 H 1.07999 * 120.00193 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99398 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99350 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00608 * 0.02562 * 9 7 6 12 12 H 1.48493 * 109.47326 * 270.00340 * 11 9 7 13 13 H 1.48506 * 109.46545 * 30.00090 * 11 9 7 14 14 H 1.48498 * 109.47210 * 149.99801 * 11 9 7 15 15 C 1.46495 * 120.00128 * 269.99540 * 5 2 1 16 16 C 1.53013 * 109.47453 * 240.00797 * 15 5 2 17 17 C 1.52993 * 109.45994 * 164.04829 * 16 15 5 18 18 C 1.52979 * 109.50933 * 315.98763 * 17 16 15 19 19 C 1.53000 * 109.47155 * 112.93751 * 18 17 16 20 20 C 1.53005 * 109.43304 * 284.03951 * 19 18 17 21 21 C 1.52986 * 109.48193 * 75.96028 * 20 19 18 22 22 C 1.52990 * 109.50548 * 247.06373 * 21 20 19 23 23 H 1.09001 * 109.47296 * 316.74616 * 1 2 3 24 24 H 1.08999 * 109.47530 * 76.75022 * 1 2 3 25 25 H 1.09007 * 109.46820 * 196.74828 * 1 2 3 26 26 H 1.09000 * 109.47175 * 334.99657 * 6 5 2 27 27 H 1.08993 * 109.47452 * 214.99447 * 6 5 2 28 28 H 0.97005 * 119.99661 * 179.97438 * 10 9 7 29 29 H 1.09004 * 109.47341 * 0.02562 * 15 5 2 30 30 H 1.09006 * 109.46860 * 284.04028 * 16 15 5 31 31 H 1.08997 * 109.47500 * 44.04647 * 16 15 5 32 32 H 1.08994 * 109.46184 * 195.97443 * 17 16 15 33 33 H 1.08996 * 109.45676 * 75.99633 * 17 16 15 34 34 H 1.08999 * 109.47122 * 352.93459 * 18 17 16 35 35 H 1.09003 * 109.47051 * 232.93730 * 18 17 16 36 36 H 1.09005 * 109.47810 * 164.05418 * 19 18 17 37 37 H 1.09002 * 109.48114 * 44.02902 * 19 18 17 38 38 H 1.08996 * 109.46830 * 315.95712 * 20 19 18 39 39 H 1.09003 * 109.46836 * 195.96540 * 20 19 18 40 40 H 1.09007 * 109.46155 * 127.05729 * 21 20 19 41 41 H 1.09000 * 109.46550 * 7.08027 * 21 20 19 42 42 H 1.08998 * 109.47512 * 284.01764 * 22 21 20 43 43 H 1.09003 * 109.47361 * 164.01170 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9118 5 7 2.2272 -0.5910 1.4908 6 6 2.4100 -2.0319 1.6826 7 6 3.8702 -2.3764 1.5392 8 1 4.5900 -1.5997 1.3270 9 6 4.2871 -3.6831 1.6801 10 7 5.5614 -3.9836 1.5556 11 14 3.0423 -5.0263 2.0480 12 1 2.8952 -5.1759 3.5180 13 1 1.7309 -4.6620 1.4538 14 1 3.5109 -6.3089 1.4643 15 6 2.4101 0.3269 2.6177 16 6 3.8394 0.2033 3.1496 17 6 4.1588 1.4075 4.0376 18 6 3.6550 2.6860 3.3653 19 6 2.5060 3.2751 4.1860 20 6 1.2362 2.4562 3.9450 21 6 1.3249 1.1382 4.7167 22 6 1.4198 -0.0265 3.7293 23 1 -0.3634 0.7485 0.7042 24 1 -0.3634 0.2355 -1.0003 25 1 -0.3633 -0.9841 0.2962 26 1 1.8336 -2.5742 0.9331 27 1 2.0666 -2.3124 2.6782 28 1 5.8548 -4.9029 1.6551 29 1 2.2330 1.3499 2.2856 30 1 3.9321 -0.7130 3.7328 31 1 4.5373 0.1736 2.3129 32 1 5.2367 1.4748 4.1845 33 1 3.6675 1.2871 5.0031 34 1 3.3020 2.4533 2.3607 35 1 4.4678 3.4099 3.3062 36 1 2.3352 4.3081 3.8829 37 1 2.7626 3.2446 5.2449 38 1 1.1351 2.2475 2.8800 39 1 0.3692 3.0206 4.2885 40 1 0.4351 1.0187 5.3350 41 1 2.2102 1.1485 5.3525 42 1 0.4381 -0.2155 3.2948 43 1 1.7637 -0.9190 4.2520 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252678140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:59 Heat of formation + Delta-G solvation = -91.519941 kcal Electronic energy + Delta-G solvation = -23657.616760 eV Core-core repulsion = 20443.247626 eV Total energy + Delta-G solvation = -3214.369133 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56674 -38.05616 -36.93725 -36.73210 -34.48711 -33.62351 -32.38536 -30.29777 -29.58156 -26.75111 -26.50340 -24.12529 -22.42796 -21.54100 -20.45142 -19.48796 -18.91585 -18.61967 -17.34486 -17.15956 -16.29844 -16.06979 -15.69083 -15.09291 -14.96788 -14.87649 -14.54354 -14.14436 -14.10056 -14.01130 -13.92722 -13.72722 -13.35467 -13.04053 -12.99335 -12.81788 -12.65960 -12.50990 -12.29698 -12.14607 -11.93838 -11.88593 -11.80632 -11.70171 -11.61495 -11.43139 -11.13408 -10.69162 -10.66012 -10.46263 -9.57246 -8.19583 -6.21379 -0.57416 1.36853 1.41440 1.49876 1.85423 2.40212 3.12655 3.14275 3.29582 3.68134 4.01276 4.04292 4.05703 4.21327 4.23857 4.29945 4.35261 4.41132 4.44369 4.50230 4.54940 4.82653 4.86691 4.91929 5.00176 5.10002 5.13320 5.18845 5.20659 5.27500 5.31326 5.38806 5.40395 5.47894 5.58108 5.60076 5.66987 5.76863 5.78885 5.97911 6.43582 6.82249 7.38937 8.98123 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.007650 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.946723 B = 3659.149857 C = 4418.480502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.582 3.418 3 O -0.996 6.996 4 O -1.000 7.000 5 N -0.987 5.987 6 C 0.233 3.767 7 C -0.516 4.516 8 H 0.030 0.970 9 C 0.000 4.000 10 N -0.956 5.956 11 Si 0.939 3.061 12 H -0.258 1.258 13 H -0.237 1.237 14 H -0.291 1.291 15 C 0.133 3.867 16 C -0.110 4.110 17 C -0.121 4.121 18 C -0.137 4.137 19 C -0.113 4.113 20 C -0.133 4.133 21 C -0.121 4.121 22 C -0.128 4.128 23 H 0.156 0.844 24 H 0.148 0.852 25 H 0.146 0.854 26 H 0.037 0.963 27 H 0.052 0.948 28 H 0.262 0.738 29 H 0.122 0.878 30 H 0.050 0.950 31 H 0.021 0.979 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.169 12.356 7.064 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.681 3.319 3 O -0.987 6.987 4 O -0.990 6.990 5 N -0.822 5.822 6 C 0.108 3.892 7 C -0.556 4.556 8 H 0.048 0.952 9 C -0.196 4.196 10 N -0.597 5.597 11 Si 0.762 3.238 12 H -0.183 1.183 13 H -0.160 1.160 14 H -0.217 1.217 15 C 0.028 3.972 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.175 4.175 19 C -0.150 4.150 20 C -0.170 4.170 21 C -0.159 4.159 22 C -0.168 4.168 23 H 0.174 0.826 24 H 0.166 0.834 25 H 0.164 0.836 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.139 0.861 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.438 12.480 6.369 20.848 hybrid contribution 0.315 -1.290 -0.121 1.333 sum -15.124 11.190 6.247 19.823 Atomic orbital electron populations 1.30367 1.22454 1.13726 1.13435 1.05314 0.80457 0.72819 0.73286 1.93491 1.79855 1.39004 1.86336 1.93575 1.79541 1.62089 1.63819 1.57270 1.84010 1.14608 1.26360 1.19158 0.94751 0.77370 0.97885 1.21727 0.93743 0.93547 1.46555 0.95194 1.25908 0.97141 1.01372 0.95198 1.70098 1.17153 1.19637 1.52848 0.85840 0.80460 0.77967 0.79517 1.18293 1.15967 1.21709 1.21643 0.95224 0.93522 0.86785 1.21786 0.96421 0.98253 0.98445 1.21875 1.00442 0.93813 0.99701 1.21906 0.99084 0.96625 0.99839 1.21692 0.94084 0.99050 1.00194 1.21888 0.98358 0.96211 1.00588 1.21839 1.03093 0.93274 0.97673 1.22027 0.99057 0.99312 0.96361 0.82569 0.83379 0.83594 0.94555 0.92999 0.92894 0.86116 0.93074 0.95967 0.93269 0.89038 0.92289 0.92208 0.91276 0.90608 0.92125 0.89972 0.90010 0.90900 0.89961 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -12.48 10.99 113.37 1.25 -11.23 16 2 S 2.58 91.67 6.00 -56.49 -0.34 91.33 16 3 O -1.00 -38.78 16.57 -127.65 -2.12 -40.89 16 4 O -1.00 -46.70 16.99 -127.65 -2.17 -48.87 16 5 N -0.99 -37.44 2.66 -497.38 -1.32 -38.77 16 6 C 0.23 10.36 3.78 85.63 0.32 10.69 16 7 C -0.52 -29.75 8.57 25.60 0.22 -29.53 16 8 H 0.03 1.98 6.74 -2.91 -0.02 1.96 16 9 C 0.00 -0.01 5.47 84.66 0.46 0.46 16 10 N -0.96 -61.59 13.96 21.45 0.30 -61.29 16 11 Si 0.94 43.06 27.47 68.60 1.88 44.94 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 14 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 15 C 0.13 4.34 1.86 45.00 0.08 4.43 16 16 C -0.11 -4.20 3.85 30.60 0.12 -4.08 16 17 C -0.12 -3.53 5.48 30.58 0.17 -3.37 16 18 C -0.14 -3.61 5.47 30.59 0.17 -3.44 16 19 C -0.11 -2.15 5.59 30.60 0.17 -1.98 16 20 C -0.13 -2.39 5.47 30.59 0.17 -2.22 16 21 C -0.12 -2.28 5.48 30.59 0.17 -2.11 16 22 C -0.13 -3.18 4.58 30.59 0.14 -3.04 16 23 H 0.16 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.15 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.04 1.59 6.67 -2.39 -0.02 1.57 16 27 H 0.05 2.09 6.27 -2.39 -0.01 2.07 16 28 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 29 H 0.12 3.67 1.56 -2.38 0.00 3.67 16 30 H 0.05 2.15 7.52 -2.38 -0.02 2.13 16 31 H 0.02 1.04 6.97 -2.39 -0.02 1.02 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 2.24 4.69 -2.39 -0.01 2.23 16 34 H 0.06 1.85 5.47 -2.39 -0.01 1.84 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.08 1.25 7.47 -2.39 -0.02 1.24 16 38 H 0.06 1.23 5.47 -2.39 -0.01 1.22 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.07 1.42 4.69 -2.39 -0.01 1.41 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.63 7.14 -2.39 -0.02 1.61 16 Total: -1.00 -80.03 323.25 0.62 -79.41 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.95 Total: 19.55 kcal Atomic # 6 Polarization: -48.87 SS G_CDS: 3.43 Total: -45.43 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -1.02 Total: -100.05 kcal Atomic # 8 Polarization: -85.47 SS G_CDS: -4.28 Total: -89.76 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 16 Polarization: 91.67 SS G_CDS: -0.34 Total: 91.33 kcal Total: -80.03 0.62 -79.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252678140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.106 kcal (2) G-P(sol) polarization free energy of solvation -80.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds