Wall clock time and date at job start Tue Mar 31 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42101 * 108.57756 * 2 1 4 4 O 1.42099 * 108.58088 * 228.97430 * 2 1 3 5 5 C 1.81400 * 101.92259 * 114.48482 * 2 1 3 6 6 H 1.08999 * 108.82635 * 63.50743 * 5 2 1 7 7 C 1.54168 * 108.85517 * 305.00300 * 5 2 1 8 8 C 1.53824 * 111.96931 * 197.78391 * 7 5 2 9 9 C 1.50819 * 111.61627 * 319.03875 * 8 7 5 10 10 N 1.47634 * 108.04071 * 95.06806 * 9 8 7 11 11 C 1.46892 * 111.00129 * 150.31876 * 10 9 8 12 12 C 1.52995 * 109.47291 * 204.17484 * 11 10 9 13 13 C 1.53004 * 109.47590 * 178.99592 * 12 11 10 14 14 C 1.50692 * 109.47510 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99994 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00225 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00362 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99767 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47074 * 89.99937 * 18 16 14 20 20 H 1.48500 * 109.47079 * 209.99776 * 18 16 14 21 21 H 1.48494 * 109.47117 * 329.99881 * 18 16 14 22 22 C 1.39776 * 114.76246 * 277.18325 * 10 9 8 23 23 C 1.50812 * 108.80388 * 182.02715 * 5 2 1 24 24 H 1.08994 * 109.47351 * 305.50929 * 1 2 3 25 25 H 1.08993 * 109.46950 * 65.51461 * 1 2 3 26 26 H 1.09008 * 109.46545 * 185.51237 * 1 2 3 27 27 H 1.09001 * 108.98396 * 77.14154 * 7 5 2 28 28 H 1.09005 * 108.98305 * 318.42230 * 7 5 2 29 29 H 1.09005 * 109.04486 * 198.49404 * 8 7 5 30 30 H 1.08992 * 109.05110 * 79.59600 * 8 7 5 31 31 H 1.08992 * 109.75349 * 335.43173 * 9 8 7 32 32 H 1.09006 * 109.74419 * 214.69923 * 9 8 7 33 33 H 1.09000 * 109.47460 * 324.18273 * 11 10 9 34 34 H 1.09007 * 109.46756 * 84.17834 * 11 10 9 35 35 H 1.08998 * 109.47821 * 299.00210 * 12 11 10 36 36 H 1.09003 * 109.47300 * 59.00432 * 12 11 10 37 37 H 1.08998 * 109.47043 * 300.01095 * 13 12 11 38 38 H 1.09001 * 109.46391 * 60.00580 * 13 12 11 39 39 H 0.97002 * 120.00355 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.02323 * 182.86401 * 22 10 9 41 41 H 1.09002 * 109.01985 * 301.75703 * 22 10 9 42 42 H 1.08995 * 109.61465 * 93.94593 * 23 5 2 43 43 H 1.09001 * 109.50254 * 333.66049 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.8111 -1.7579 1.6323 7 6 1.4728 0.0783 2.7115 8 6 2.0668 -0.1869 4.1055 9 6 2.3807 -1.6482 4.3069 10 7 3.8032 -1.8604 3.9735 11 6 4.3673 -2.9689 4.7549 12 6 5.8835 -2.7960 4.8644 13 6 6.4681 -3.9371 5.6994 14 6 7.9614 -3.7664 5.8078 15 1 8.4452 -2.9277 5.3293 16 6 8.7101 -4.6809 6.5177 17 7 10.0133 -4.5317 6.6127 18 14 7.8735 -6.1320 7.3447 19 1 7.8236 -7.2780 6.4016 20 1 8.6396 -6.5207 8.5559 21 1 6.4921 -5.7508 7.7339 22 6 4.0672 -2.0229 2.6106 23 6 3.6851 -0.7646 1.8008 24 1 -0.3634 0.5969 0.8365 25 1 -0.3633 0.4259 -0.9352 26 1 -0.3633 -1.0230 0.0987 27 1 0.4164 -0.1899 2.7194 28 1 1.5658 1.1400 2.4827 29 1 1.3508 0.1310 4.8635 30 1 2.9829 0.3927 4.2180 31 1 1.7546 -2.2532 3.6512 32 1 2.2009 -1.9237 5.3461 33 1 3.9287 -2.9703 5.7528 34 1 4.1442 -3.9136 4.2588 35 1 6.3241 -2.8126 3.8676 36 1 6.1069 -1.8433 5.3446 37 1 6.0275 -3.9205 6.6963 38 1 6.2449 -4.8898 5.2193 39 1 10.5402 -5.1753 7.1118 40 1 5.1302 -2.2227 2.4759 41 1 3.4961 -2.8728 2.2370 42 1 4.0043 0.1270 2.3404 43 1 4.1721 -0.7964 0.8261 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256605049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:55 Heat of formation + Delta-G solvation = -76.407395 kcal Electronic energy + Delta-G solvation = -21710.003420 eV Core-core repulsion = 18496.289616 eV Total energy + Delta-G solvation = -3213.713804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.64673 -37.29401 -36.31835 -35.65813 -33.44410 -32.47415 -31.50912 -30.05398 -27.80748 -25.78905 -25.45321 -22.55938 -20.93711 -20.42674 -19.88707 -18.94591 -17.46377 -16.72611 -16.52148 -16.27935 -15.51365 -15.47069 -14.96148 -14.85579 -14.13238 -13.96970 -13.68968 -13.61221 -13.45368 -12.84822 -12.69973 -12.62938 -12.49706 -12.35500 -12.26445 -11.87149 -11.63114 -11.37277 -11.36442 -11.21117 -11.03725 -10.93748 -10.76281 -10.65771 -10.23567 -9.90683 -9.66980 -9.54616 -9.15668 -8.51997 -8.07548 -6.02117 -3.99805 -0.34448 2.37927 3.30899 3.30959 3.38288 3.41512 3.59171 3.92765 4.14666 4.20671 4.37706 4.46414 4.54569 4.66031 4.81108 4.88973 5.04764 5.17608 5.20588 5.24399 5.31787 5.39546 5.41838 5.51461 5.61992 5.68788 5.79379 5.84411 5.95639 6.07185 6.14896 6.20479 6.55438 6.58962 6.94038 7.25599 7.39088 7.43311 7.56996 7.82460 8.57389 9.03909 9.60483 11.11541 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.003054 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.433516 B = 9164.749601 C = 9486.111874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.413 3.587 3 O -0.936 6.936 4 O -0.940 6.940 5 C -0.561 4.561 6 H 0.133 0.867 7 C -0.106 4.106 8 C -0.112 4.112 9 C 0.063 3.937 10 N -0.555 5.555 11 C 0.059 3.941 12 C -0.098 4.098 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.081 3.919 23 C -0.102 4.102 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.014 0.986 38 H 0.008 0.992 39 H 0.262 0.738 40 H 0.087 0.913 41 H 0.020 0.980 42 H 0.097 0.903 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.257 8.825 -10.058 27.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.597 3.403 3 O -0.933 6.933 4 O -0.938 6.938 5 C -0.671 4.671 6 H 0.151 0.849 7 C -0.145 4.145 8 C -0.151 4.151 9 C -0.064 4.064 10 N -0.279 5.279 11 C -0.068 4.068 12 C -0.136 4.136 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.050 4.050 23 C -0.141 4.141 24 H 0.148 0.852 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.033 0.967 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.038 0.962 42 H 0.116 0.884 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.328 9.450 -10.566 27.298 hybrid contribution -1.334 -1.933 0.746 2.464 sum -24.662 7.517 -9.820 27.589 Atomic orbital electron populations 1.30307 1.27367 1.11480 1.11663 1.08270 0.78215 0.76039 0.77817 1.93593 1.78854 1.34383 1.86506 1.93608 1.79079 1.67062 1.54010 1.30009 1.06022 1.12117 1.18978 0.84929 1.21855 0.98668 0.99253 0.94681 1.21367 1.01947 0.97427 0.94376 1.21845 0.87909 0.96039 1.00598 1.58808 1.15425 1.45932 1.07722 1.22345 0.97713 0.90085 0.96629 1.21487 0.90944 1.00586 1.00543 1.19551 0.96973 0.93666 0.94925 1.21150 0.90216 1.11399 1.32834 0.91010 1.25047 0.94698 0.97855 0.96014 1.69919 1.05273 1.36843 1.42363 0.86766 0.80025 0.83125 0.79255 1.20400 1.21444 1.19083 1.20893 1.02180 0.94262 0.87624 1.21298 0.89376 1.02067 1.01401 0.85202 0.85453 0.85443 0.90901 0.90222 0.91366 0.89701 0.94495 0.90748 0.91290 0.95144 0.92911 0.91941 0.96736 0.97378 0.92784 0.89458 0.96239 0.88408 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.65 10.09 101.05 1.02 -1.63 16 2 S 2.41 19.32 4.54 -107.50 -0.49 18.84 16 3 O -0.94 -10.73 17.70 -57.83 -1.02 -11.76 16 4 O -0.94 -11.24 17.99 -57.83 -1.04 -12.28 16 5 C -0.56 -4.23 2.11 -27.22 -0.06 -4.29 16 6 H 0.13 0.81 6.58 -51.89 -0.34 0.46 16 7 C -0.11 -0.67 4.47 -25.69 -0.11 -0.78 16 8 C -0.11 -0.92 5.41 -27.40 -0.15 -1.07 16 9 C 0.06 0.63 5.37 -4.51 -0.02 0.61 16 10 N -0.55 -7.19 3.88 -240.01 -0.93 -8.12 16 11 C 0.06 0.91 5.03 -3.83 -0.02 0.89 16 12 C -0.10 -1.90 5.21 -26.73 -0.14 -2.04 16 13 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 14 C -0.52 -14.90 9.66 -34.45 -0.33 -15.23 16 15 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 16 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 18 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 22 C 0.08 1.00 4.77 -6.75 -0.03 0.97 16 23 C -0.10 -1.06 5.17 -27.08 -0.14 -1.20 16 24 H 0.13 0.29 7.16 -51.93 -0.37 -0.08 16 25 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 27 H 0.07 0.25 7.42 -51.93 -0.39 -0.13 16 28 H 0.08 0.46 7.64 -51.93 -0.40 0.07 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.84 7.26 -51.93 -0.38 0.47 16 31 H 0.04 0.33 6.66 -51.93 -0.35 -0.02 16 32 H 0.07 0.73 7.39 -51.93 -0.38 0.35 16 33 H 0.07 1.03 7.43 -51.93 -0.39 0.64 16 34 H 0.03 0.47 7.98 -51.92 -0.41 0.05 16 35 H 0.05 1.04 6.73 -51.93 -0.35 0.69 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 38 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.09 1.20 6.42 -51.93 -0.33 0.87 16 41 H 0.02 0.23 7.54 -51.93 -0.39 -0.16 16 42 H 0.10 1.04 7.10 -51.93 -0.37 0.67 16 43 H 0.07 0.75 7.57 -51.93 -0.39 0.36 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -36.22 337.59 -9.77 -45.99 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -7.28 Total: -5.07 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -0.20 Total: -22.40 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.16 Total: -35.56 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -2.06 Total: -24.03 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 19.32 SS G_CDS: -0.49 Total: 18.84 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.22 -9.77 -45.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256605049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.414 kcal (2) G-P(sol) polarization free energy of solvation -36.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds