Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42101 * 108.57756 * 2 1 4 4 O 1.42099 * 108.58088 * 228.97430 * 2 1 3 5 5 C 1.81400 * 101.92259 * 114.48482 * 2 1 3 6 6 H 1.08999 * 108.82635 * 63.50743 * 5 2 1 7 7 C 1.54168 * 108.85517 * 305.00300 * 5 2 1 8 8 C 1.53824 * 111.96931 * 197.78391 * 7 5 2 9 9 C 1.50819 * 111.61627 * 319.03875 * 8 7 5 10 10 N 1.47634 * 108.04071 * 95.06806 * 9 8 7 11 11 C 1.46892 * 111.00129 * 150.31876 * 10 9 8 12 12 C 1.52995 * 109.47291 * 204.17484 * 11 10 9 13 13 C 1.53004 * 109.47590 * 178.99592 * 12 11 10 14 14 C 1.50692 * 109.47510 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99994 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00225 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00362 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99767 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47074 * 89.99937 * 18 16 14 20 20 H 1.48500 * 109.47079 * 209.99776 * 18 16 14 21 21 H 1.48494 * 109.47117 * 329.99881 * 18 16 14 22 22 C 1.39776 * 114.76246 * 277.18325 * 10 9 8 23 23 C 1.50812 * 108.80388 * 182.02715 * 5 2 1 24 24 H 1.08994 * 109.47351 * 305.50929 * 1 2 3 25 25 H 1.08993 * 109.46950 * 65.51461 * 1 2 3 26 26 H 1.09008 * 109.46545 * 185.51237 * 1 2 3 27 27 H 1.09001 * 108.98396 * 77.14154 * 7 5 2 28 28 H 1.09005 * 108.98305 * 318.42230 * 7 5 2 29 29 H 1.09005 * 109.04486 * 198.49404 * 8 7 5 30 30 H 1.08992 * 109.05110 * 79.59600 * 8 7 5 31 31 H 1.08992 * 109.75349 * 335.43173 * 9 8 7 32 32 H 1.09006 * 109.74419 * 214.69923 * 9 8 7 33 33 H 1.09000 * 109.47460 * 324.18273 * 11 10 9 34 34 H 1.09007 * 109.46756 * 84.17834 * 11 10 9 35 35 H 1.08998 * 109.47821 * 299.00210 * 12 11 10 36 36 H 1.09003 * 109.47300 * 59.00432 * 12 11 10 37 37 H 1.08998 * 109.47043 * 300.01095 * 13 12 11 38 38 H 1.09001 * 109.46391 * 60.00580 * 13 12 11 39 39 H 0.97002 * 120.00355 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.02323 * 182.86401 * 22 10 9 41 41 H 1.09002 * 109.01985 * 301.75703 * 22 10 9 42 42 H 1.08995 * 109.61465 * 93.94593 * 23 5 2 43 43 H 1.09001 * 109.50254 * 333.66049 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.8111 -1.7579 1.6323 7 6 1.4728 0.0783 2.7115 8 6 2.0668 -0.1869 4.1055 9 6 2.3807 -1.6482 4.3069 10 7 3.8032 -1.8604 3.9735 11 6 4.3673 -2.9689 4.7549 12 6 5.8835 -2.7960 4.8644 13 6 6.4681 -3.9371 5.6994 14 6 7.9614 -3.7664 5.8078 15 1 8.4452 -2.9277 5.3293 16 6 8.7101 -4.6809 6.5177 17 7 10.0133 -4.5317 6.6127 18 14 7.8735 -6.1320 7.3447 19 1 7.8236 -7.2780 6.4016 20 1 8.6396 -6.5207 8.5559 21 1 6.4921 -5.7508 7.7339 22 6 4.0672 -2.0229 2.6106 23 6 3.6851 -0.7646 1.8008 24 1 -0.3634 0.5969 0.8365 25 1 -0.3633 0.4259 -0.9352 26 1 -0.3633 -1.0230 0.0987 27 1 0.4164 -0.1899 2.7194 28 1 1.5658 1.1400 2.4827 29 1 1.3508 0.1310 4.8635 30 1 2.9829 0.3927 4.2180 31 1 1.7546 -2.2532 3.6512 32 1 2.2009 -1.9237 5.3461 33 1 3.9287 -2.9703 5.7528 34 1 4.1442 -3.9136 4.2588 35 1 6.3241 -2.8126 3.8676 36 1 6.1069 -1.8433 5.3446 37 1 6.0275 -3.9205 6.6963 38 1 6.2449 -4.8898 5.2193 39 1 10.5402 -5.1753 7.1118 40 1 5.1302 -2.2227 2.4759 41 1 3.4961 -2.8728 2.2370 42 1 4.0043 0.1270 2.3404 43 1 4.1721 -0.7964 0.8261 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256605049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = -104.014655 kcal Electronic energy + Delta-G solvation = -21711.200560 eV Core-core repulsion = 18496.289616 eV Total energy + Delta-G solvation = -3214.910945 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52792 -38.03249 -37.05798 -36.77320 -35.20479 -33.33809 -33.21168 -30.50553 -29.21670 -26.85882 -26.35858 -24.06208 -22.11928 -21.52615 -20.95175 -19.57639 -18.91543 -18.11160 -17.17316 -17.01944 -16.59490 -16.45460 -16.05427 -15.92233 -15.51031 -15.20879 -14.77978 -14.31261 -14.02895 -13.88762 -13.87201 -13.72468 -13.35497 -13.20527 -13.10951 -13.07091 -13.01978 -12.63420 -12.50196 -12.24230 -12.01548 -11.87503 -11.79557 -11.77113 -11.42901 -11.38529 -11.30380 -11.15085 -10.87372 -10.75801 -9.07180 -8.29179 -6.33840 -0.91809 1.35824 1.38362 1.50635 1.85226 2.36784 2.73865 2.94807 3.06048 3.07815 3.53471 3.60864 3.89493 4.06261 4.13230 4.19308 4.24002 4.28094 4.33995 4.40159 4.50963 4.58899 4.67023 4.72467 4.75555 4.80205 4.91402 4.93775 4.99889 5.03822 5.09538 5.15074 5.20134 5.33003 5.50698 5.57627 5.62412 5.67685 6.23543 6.32787 6.57624 6.75072 7.30790 8.88185 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.003054 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.433516 B = 9164.749601 C = 9486.111874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.634 4.634 2 S 2.409 3.591 3 O -0.982 6.982 4 O -0.991 6.991 5 C -0.556 4.556 6 H 0.154 0.846 7 C -0.109 4.109 8 C -0.112 4.112 9 C 0.060 3.940 10 N -0.566 5.566 11 C 0.071 3.929 12 C -0.090 4.090 13 C -0.009 4.009 14 C -0.534 4.534 15 H 0.025 0.975 16 C -0.001 4.001 17 N -0.955 5.955 18 Si 0.957 3.043 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.242 1.242 22 C 0.080 3.920 23 C -0.105 4.105 24 H 0.158 0.842 25 H 0.137 0.863 26 H 0.155 0.845 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.023 0.977 38 H 0.017 0.983 39 H 0.266 0.734 40 H 0.059 0.941 41 H 0.030 0.970 42 H 0.087 0.913 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.012 7.818 -9.375 31.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.599 3.401 3 O -0.979 6.979 4 O -0.988 6.988 5 C -0.666 4.666 6 H 0.172 0.828 7 C -0.147 4.147 8 C -0.151 4.151 9 C -0.066 4.066 10 N -0.291 5.291 11 C -0.056 4.056 12 C -0.128 4.128 13 C -0.047 4.047 14 C -0.572 4.572 15 H 0.044 0.956 16 C -0.197 4.197 17 N -0.596 5.596 18 Si 0.780 3.220 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.165 1.165 22 C -0.051 4.051 23 C -0.144 4.144 24 H 0.177 0.823 25 H 0.156 0.844 26 H 0.173 0.827 27 H 0.135 0.865 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.105 0.895 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -28.059 8.468 -9.906 30.937 hybrid contribution 0.178 -1.524 0.508 1.616 sum -27.880 6.945 -9.398 30.230 Atomic orbital electron populations 1.30086 1.20913 1.14135 1.13620 1.07999 0.80571 0.74402 0.77174 1.93535 1.81229 1.36214 1.86972 1.93544 1.81522 1.67784 1.55968 1.29924 1.03825 1.13729 1.19120 0.82783 1.21990 1.00692 0.99371 0.92648 1.21352 1.01587 0.95825 0.96373 1.22001 0.85781 0.97511 1.01296 1.58713 1.17929 1.44845 1.07580 1.22078 0.94361 0.91268 0.97913 1.21315 0.94431 0.98236 0.98800 1.19486 0.93543 0.95515 0.96133 1.21536 0.93238 1.10089 1.32386 0.95647 1.26125 0.95313 1.01509 0.96786 1.70090 1.07330 1.38498 1.43705 0.85557 0.79791 0.78591 0.78064 1.19187 1.21011 1.16488 1.20865 1.00777 0.95599 0.87847 1.21229 0.92084 1.00611 1.00475 0.82336 0.84441 0.82671 0.86535 0.89887 0.89126 0.92277 0.92519 0.90336 0.90112 0.94576 0.94234 0.93586 0.95867 0.96418 0.92512 0.92285 0.95213 0.89459 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -2.11 10.09 113.37 1.14 -0.97 16 2 S 2.41 35.38 4.54 -56.49 -0.26 35.12 16 3 O -0.98 -22.49 17.70 -127.37 -2.25 -24.75 16 4 O -0.99 -23.70 17.99 -127.37 -2.29 -25.99 16 5 C -0.56 -7.13 2.11 30.28 0.06 -7.07 16 6 H 0.15 1.30 6.58 -2.41 -0.02 1.29 16 7 C -0.11 -0.96 4.47 31.27 0.14 -0.82 16 8 C -0.11 -1.52 5.41 30.16 0.16 -1.36 16 9 C 0.06 1.01 5.37 85.45 0.46 1.47 16 10 N -0.57 -14.10 3.88 -913.24 -3.54 -17.64 16 11 C 0.07 2.09 5.03 86.30 0.43 2.53 16 12 C -0.09 -3.57 5.21 30.59 0.16 -3.41 16 13 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 14 C -0.53 -31.85 9.66 25.60 0.25 -31.60 16 15 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 16 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 17 N -0.96 -61.52 13.96 21.45 0.30 -61.22 16 18 Si 0.96 44.63 27.47 68.60 1.88 46.51 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 22 C 0.08 1.96 4.77 88.07 0.42 2.38 16 23 C -0.11 -2.20 5.17 30.37 0.16 -2.05 16 24 H 0.16 -0.27 7.16 -2.39 -0.02 -0.28 16 25 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.12 0.06 7.42 -2.39 -0.02 0.04 16 28 H 0.08 0.72 7.64 -2.38 -0.02 0.70 16 29 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 1.12 7.26 -2.39 -0.02 1.10 16 31 H 0.06 0.75 6.66 -2.39 -0.02 0.74 16 32 H 0.08 1.27 7.39 -2.38 -0.02 1.25 16 33 H 0.08 2.20 7.43 -2.39 -0.02 2.19 16 34 H 0.04 1.03 7.98 -2.38 -0.02 1.01 16 35 H 0.04 1.64 6.73 -2.39 -0.02 1.63 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.02 1.05 7.20 -2.39 -0.02 1.04 16 38 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 39 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 40 H 0.06 1.74 6.42 -2.39 -0.02 1.73 16 41 H 0.03 0.66 7.54 -2.39 -0.02 0.65 16 42 H 0.09 1.97 7.10 -2.39 -0.02 1.95 16 43 H 0.07 1.46 7.57 -2.39 -0.02 1.44 16 Total: -1.00 -83.67 337.59 -1.27 -84.94 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 0.92 Total: 3.83 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 3.97 Total: -40.80 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -3.24 Total: -78.87 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -4.55 Total: -50.73 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Atomic # 16 Polarization: 35.38 SS G_CDS: -0.26 Total: 35.12 kcal Total: -83.67 -1.27 -84.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256605049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.074 kcal (2) G-P(sol) polarization free energy of solvation -83.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds