Wall clock time and date at job start Tue Mar 31 2020 05:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42103 * 108.58133 * 2 1 4 4 O 1.42092 * 108.58095 * 228.97147 * 2 1 3 5 5 C 1.81401 * 101.92119 * 114.48301 * 2 1 3 6 6 H 1.09007 * 109.57289 * 300.25618 * 5 2 1 7 7 C 1.50462 * 109.67753 * 60.56517 * 5 2 1 8 8 C 1.54294 * 113.03874 * 212.02947 * 7 5 2 9 9 C 1.54063 * 112.28481 * 318.30554 * 8 7 5 10 10 N 1.44279 * 111.98271 * 318.91344 * 9 8 7 11 11 C 1.46900 * 110.99934 * 219.31325 * 10 9 8 12 12 C 1.53008 * 109.46972 * 303.29766 * 11 10 9 13 13 C 1.53005 * 109.46958 * 182.21652 * 12 11 10 14 14 C 1.50698 * 109.46588 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00552 * 359.97438 * 14 13 12 16 16 C 1.37887 * 119.99376 * 180.02562 * 14 13 12 17 17 N 1.31503 * 120.00146 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99670 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46813 * 269.99746 * 18 16 14 20 20 H 1.48498 * 109.47241 * 29.99523 * 18 16 14 21 21 H 1.48493 * 109.46864 * 149.99372 * 18 16 14 22 22 C 1.47798 * 109.46180 * 96.43829 * 10 9 8 23 23 C 1.45856 * 112.91770 * 276.73923 * 22 10 9 24 24 H 1.09005 * 109.47105 * 305.51950 * 1 2 3 25 25 H 1.09001 * 109.46896 * 65.51570 * 1 2 3 26 26 H 1.08996 * 109.47294 * 185.51077 * 1 2 3 27 27 H 1.09007 * 108.77017 * 332.94862 * 7 5 2 28 28 H 1.09004 * 108.76677 * 91.22580 * 7 5 2 29 29 H 1.08993 * 108.91770 * 79.02491 * 8 7 5 30 30 H 1.08998 * 108.91912 * 197.57811 * 8 7 5 31 31 H 1.09000 * 108.98099 * 198.27188 * 9 8 7 32 32 H 1.08995 * 108.98562 * 79.55791 * 9 8 7 33 33 H 1.08997 * 109.47439 * 183.30196 * 11 10 9 34 34 H 1.08997 * 109.47407 * 63.29470 * 11 10 9 35 35 H 1.08997 * 109.46776 * 62.22296 * 12 11 10 36 36 H 1.08992 * 109.47250 * 302.21692 * 12 11 10 37 37 H 1.08990 * 109.46824 * 60.00291 * 13 12 11 38 38 H 1.09000 * 109.46868 * 299.99977 * 13 12 11 39 39 H 0.97008 * 119.99976 * 180.02562 * 17 16 14 40 40 H 1.09003 * 108.79789 * 37.63004 * 22 10 9 41 41 H 1.09007 * 108.79216 * 155.96925 * 22 10 9 42 42 H 1.09002 * 109.05869 * 181.87221 * 23 22 10 43 43 H 1.09003 * 109.05993 * 300.78549 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0160 5 6 2.1887 -0.7356 1.6153 6 1 1.7578 -0.1205 2.4054 7 6 1.6121 -2.1235 1.6860 8 6 1.1681 -2.5212 3.1091 9 6 2.1772 -2.0716 4.1830 10 7 3.5417 -2.2773 3.7617 11 6 4.3707 -2.7542 4.8767 12 6 4.2899 -1.7577 6.0350 13 6 5.1965 -2.2262 7.1750 14 6 5.1164 -1.2450 8.3159 15 1 4.4827 -0.3741 8.2359 16 6 5.8531 -1.4586 9.4618 17 7 6.6251 -2.5187 9.5591 18 14 5.7545 -0.2420 10.8759 19 1 6.7929 0.8051 10.7012 20 1 4.4112 0.3909 10.8916 21 1 5.9809 -0.9548 12.1587 22 6 4.0792 -1.0193 3.2023 23 6 3.7199 -0.8209 1.8027 24 1 -0.3633 0.5971 0.8365 25 1 -0.3633 0.4259 -0.9353 26 1 -0.3634 -1.0229 0.0987 27 1 0.7502 -2.1795 1.0211 28 1 2.3649 -2.8338 1.3439 29 1 0.2016 -2.0631 3.3187 30 1 1.0612 -3.6049 3.1561 31 1 1.9990 -2.6389 5.0966 32 1 2.0261 -1.0123 4.3902 33 1 5.4057 -2.8450 4.5471 34 1 4.0083 -3.7272 5.2087 35 1 3.2614 -1.6965 6.3905 36 1 4.6151 -0.7754 5.6925 37 1 6.2250 -2.2875 6.8195 38 1 4.8713 -3.2086 7.5175 39 1 7.1431 -2.6692 10.3654 40 1 3.6944 -0.1828 3.7857 41 1 5.1660 -1.0342 3.2854 42 1 4.1741 0.1037 1.4463 43 1 4.1045 -1.6544 1.2149 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256605051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:58 Heat of formation + Delta-G solvation = -80.610714 kcal Electronic energy + Delta-G solvation = -21846.110024 eV Core-core repulsion = 18632.213950 eV Total energy + Delta-G solvation = -3213.896074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.52324 -37.22217 -36.24689 -35.59697 -33.32689 -32.68851 -31.11388 -29.88719 -27.60556 -25.51241 -25.20488 -22.92520 -21.23578 -20.70126 -19.20082 -18.90159 -17.38745 -16.46260 -16.30576 -16.18989 -15.67487 -15.18578 -14.77343 -14.59251 -14.37310 -13.98477 -13.65551 -13.55530 -12.98650 -12.96634 -12.72185 -12.44094 -12.30332 -12.20350 -12.19123 -11.77052 -11.35683 -11.29587 -11.12929 -11.06343 -10.91866 -10.75619 -10.69819 -10.66040 -10.49629 -10.14995 -9.70332 -9.53620 -9.21292 -8.38763 -7.98498 -6.03468 -4.06347 -0.26333 2.46758 3.28635 3.35067 3.36188 3.37914 3.70467 4.01589 4.15161 4.39559 4.42677 4.44114 4.69245 4.75860 4.97447 5.05591 5.16215 5.27108 5.31087 5.32271 5.32844 5.53074 5.64303 5.70026 5.78876 5.88605 5.93488 5.98795 6.02229 6.09427 6.17543 6.22985 6.51895 6.72728 6.99095 7.29540 7.41171 7.62249 7.76639 7.95667 8.38738 9.00596 9.58016 11.07527 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.003095 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.245300 B = 9043.386631 C = 9260.312526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.417 3.583 3 O -0.943 6.943 4 O -0.938 6.938 5 C -0.561 4.561 6 H 0.135 0.865 7 C -0.092 4.092 8 C -0.105 4.105 9 C 0.051 3.949 10 N -0.529 5.529 11 C 0.053 3.947 12 C -0.144 4.144 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.052 0.948 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.275 1.275 21 H -0.286 1.286 22 C 0.055 3.945 23 C -0.091 4.091 24 H 0.128 0.872 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.261 0.739 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.547 1.979 -18.518 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.600 3.400 3 O -0.940 6.940 4 O -0.935 6.935 5 C -0.671 4.671 6 H 0.153 0.847 7 C -0.131 4.131 8 C -0.144 4.144 9 C -0.078 4.078 10 N -0.251 5.251 11 C -0.074 4.074 12 C -0.183 4.183 13 C -0.013 4.013 14 C -0.560 4.560 15 H 0.071 0.929 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.199 1.199 21 H -0.212 1.212 22 C -0.074 4.074 23 C -0.130 4.130 24 H 0.147 0.853 25 H 0.146 0.854 26 H 0.149 0.851 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.854 1.829 -19.466 23.399 hybrid contribution -0.661 1.076 2.256 2.585 sum -13.515 2.905 -17.210 22.074 Atomic orbital electron populations 1.30302 1.27290 1.11641 1.11587 1.08119 0.78239 0.75649 0.77986 1.93593 1.79056 1.34705 1.86676 1.93581 1.78822 1.66835 1.54299 1.30011 1.06394 1.08923 1.21730 0.84661 1.21006 1.00389 0.93074 0.98614 1.21931 0.97538 1.01615 0.93311 1.21903 0.89062 0.99848 0.97015 1.61815 1.02067 1.28740 1.32524 1.22477 0.97135 0.98611 0.89169 1.22280 1.00873 0.98149 0.97036 1.19019 0.94195 0.96497 0.91610 1.21246 1.26074 1.08401 1.00300 0.92935 1.25026 0.95362 0.95454 0.98581 1.69957 1.28244 1.27115 1.28083 0.86612 0.78391 0.81247 0.81863 1.20639 1.19946 1.21176 1.20887 1.00739 0.91517 0.94224 1.20431 0.89340 1.03317 0.99892 0.85323 0.85446 0.85111 0.92583 0.89189 0.92185 0.91268 0.91092 0.94172 0.90968 0.90941 0.93371 0.93420 0.96627 0.96632 0.92967 0.93852 0.90359 0.90559 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.14 10.25 101.05 1.04 -2.10 16 2 S 2.42 20.46 4.74 -107.50 -0.51 19.96 16 3 O -0.94 -11.47 18.03 -57.83 -1.04 -12.51 16 4 O -0.94 -11.08 17.97 -57.83 -1.04 -12.12 16 5 C -0.56 -4.67 2.25 -27.21 -0.06 -4.73 16 6 H 0.14 0.94 7.15 -51.92 -0.37 0.57 16 7 C -0.09 -0.75 4.82 -27.32 -0.13 -0.88 16 8 C -0.10 -0.93 6.15 -25.50 -0.16 -1.09 16 9 C 0.05 0.61 4.04 -4.67 -0.02 0.59 16 10 N -0.53 -7.04 4.45 -239.55 -1.07 -8.11 16 11 C 0.05 0.86 5.06 -3.82 -0.02 0.84 16 12 C -0.14 -2.82 4.60 -26.72 -0.12 -2.95 16 13 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.79 13.28 55.43 0.74 -26.05 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.05 0.68 3.97 -6.71 -0.03 0.65 16 23 C -0.09 -0.94 4.92 -29.32 -0.14 -1.08 16 24 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.13 0.52 8.14 -51.92 -0.42 0.09 16 26 H 0.13 0.42 6.51 -51.93 -0.34 0.08 16 27 H 0.06 0.30 5.71 -51.93 -0.30 0.00 16 28 H 0.09 0.84 7.38 -51.93 -0.38 0.46 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.93 6.84 -51.93 -0.36 0.58 16 32 H 0.04 0.48 6.51 -51.93 -0.34 0.14 16 33 H 0.07 1.18 7.91 -51.93 -0.41 0.77 16 34 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 35 H 0.05 0.93 6.77 -51.93 -0.35 0.58 16 36 H 0.05 0.93 7.04 -51.93 -0.37 0.57 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.04 0.56 6.84 -51.93 -0.36 0.20 16 41 H 0.08 1.01 7.66 -51.93 -0.40 0.61 16 42 H 0.08 0.73 7.95 -51.93 -0.41 0.32 16 43 H 0.09 0.91 7.59 -51.93 -0.39 0.51 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -34.98 339.81 -10.29 -45.27 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -7.27 Total: -4.38 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -0.20 Total: -23.74 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: -0.33 Total: -34.16 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -2.08 Total: -24.63 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 20.46 SS G_CDS: -0.51 Total: 19.96 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.98 -10.29 -45.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256605051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.342 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds