Wall clock time and date at job start Tue Mar 31 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42103 * 108.58133 * 2 1 4 4 O 1.42092 * 108.58095 * 228.97147 * 2 1 3 5 5 C 1.81401 * 101.92119 * 114.48301 * 2 1 3 6 6 H 1.09007 * 109.57289 * 300.25618 * 5 2 1 7 7 C 1.50462 * 109.67753 * 60.56517 * 5 2 1 8 8 C 1.54294 * 113.03874 * 212.02947 * 7 5 2 9 9 C 1.54063 * 112.28481 * 318.30554 * 8 7 5 10 10 N 1.44279 * 111.98271 * 318.91344 * 9 8 7 11 11 C 1.46900 * 110.99934 * 219.31325 * 10 9 8 12 12 C 1.53008 * 109.46972 * 303.29766 * 11 10 9 13 13 C 1.53005 * 109.46958 * 182.21652 * 12 11 10 14 14 C 1.50698 * 109.46588 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00552 * 359.97438 * 14 13 12 16 16 C 1.37887 * 119.99376 * 180.02562 * 14 13 12 17 17 N 1.31503 * 120.00146 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99670 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46813 * 269.99746 * 18 16 14 20 20 H 1.48498 * 109.47241 * 29.99523 * 18 16 14 21 21 H 1.48493 * 109.46864 * 149.99372 * 18 16 14 22 22 C 1.47798 * 109.46180 * 96.43829 * 10 9 8 23 23 C 1.45856 * 112.91770 * 276.73923 * 22 10 9 24 24 H 1.09005 * 109.47105 * 305.51950 * 1 2 3 25 25 H 1.09001 * 109.46896 * 65.51570 * 1 2 3 26 26 H 1.08996 * 109.47294 * 185.51077 * 1 2 3 27 27 H 1.09007 * 108.77017 * 332.94862 * 7 5 2 28 28 H 1.09004 * 108.76677 * 91.22580 * 7 5 2 29 29 H 1.08993 * 108.91770 * 79.02491 * 8 7 5 30 30 H 1.08998 * 108.91912 * 197.57811 * 8 7 5 31 31 H 1.09000 * 108.98099 * 198.27188 * 9 8 7 32 32 H 1.08995 * 108.98562 * 79.55791 * 9 8 7 33 33 H 1.08997 * 109.47439 * 183.30196 * 11 10 9 34 34 H 1.08997 * 109.47407 * 63.29470 * 11 10 9 35 35 H 1.08997 * 109.46776 * 62.22296 * 12 11 10 36 36 H 1.08992 * 109.47250 * 302.21692 * 12 11 10 37 37 H 1.08990 * 109.46824 * 60.00291 * 13 12 11 38 38 H 1.09000 * 109.46868 * 299.99977 * 13 12 11 39 39 H 0.97008 * 119.99976 * 180.02562 * 17 16 14 40 40 H 1.09003 * 108.79789 * 37.63004 * 22 10 9 41 41 H 1.09007 * 108.79216 * 155.96925 * 22 10 9 42 42 H 1.09002 * 109.05869 * 181.87221 * 23 22 10 43 43 H 1.09003 * 109.05993 * 300.78549 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0160 5 6 2.1887 -0.7356 1.6153 6 1 1.7578 -0.1205 2.4054 7 6 1.6121 -2.1235 1.6860 8 6 1.1681 -2.5212 3.1091 9 6 2.1772 -2.0716 4.1830 10 7 3.5417 -2.2773 3.7617 11 6 4.3707 -2.7542 4.8767 12 6 4.2899 -1.7577 6.0350 13 6 5.1965 -2.2262 7.1750 14 6 5.1164 -1.2450 8.3159 15 1 4.4827 -0.3741 8.2359 16 6 5.8531 -1.4586 9.4618 17 7 6.6251 -2.5187 9.5591 18 14 5.7545 -0.2420 10.8759 19 1 6.7929 0.8051 10.7012 20 1 4.4112 0.3909 10.8916 21 1 5.9809 -0.9548 12.1587 22 6 4.0792 -1.0193 3.2023 23 6 3.7199 -0.8209 1.8027 24 1 -0.3633 0.5971 0.8365 25 1 -0.3633 0.4259 -0.9353 26 1 -0.3634 -1.0229 0.0987 27 1 0.7502 -2.1795 1.0211 28 1 2.3649 -2.8338 1.3439 29 1 0.2016 -2.0631 3.3187 30 1 1.0612 -3.6049 3.1561 31 1 1.9990 -2.6389 5.0966 32 1 2.0261 -1.0123 4.3902 33 1 5.4057 -2.8450 4.5471 34 1 4.0083 -3.7272 5.2087 35 1 3.2614 -1.6965 6.3905 36 1 4.6151 -0.7754 5.6925 37 1 6.2250 -2.2875 6.8195 38 1 4.8713 -3.2086 7.5175 39 1 7.1431 -2.6692 10.3654 40 1 3.6944 -0.1828 3.7857 41 1 5.1660 -1.0342 3.2854 42 1 4.1741 0.1037 1.4463 43 1 4.1045 -1.6544 1.2149 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256605051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:57 Heat of formation + Delta-G solvation = -106.477226 kcal Electronic energy + Delta-G solvation = -21847.231680 eV Core-core repulsion = 18632.213950 eV Total energy + Delta-G solvation = -3215.017730 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51674 -37.99778 -37.02648 -36.78381 -35.18081 -33.51331 -32.81814 -30.39131 -28.96569 -26.92611 -26.13655 -24.41461 -22.70553 -21.67053 -20.29477 -19.63227 -18.55235 -18.04337 -17.12516 -17.03088 -16.62402 -16.49357 -16.09046 -15.77528 -15.53278 -15.15437 -14.46175 -14.24058 -14.06465 -13.90086 -13.79978 -13.62540 -13.51070 -13.10921 -13.05661 -12.99380 -12.90517 -12.61230 -12.50047 -12.36662 -12.09594 -11.96638 -11.82281 -11.64648 -11.52228 -11.34197 -11.31289 -11.25409 -10.88068 -10.58060 -9.18386 -8.22164 -6.34381 -0.88504 1.37424 1.38527 1.49494 1.88591 2.38072 2.74087 2.95919 3.10119 3.12064 3.43506 3.77109 3.99167 4.09947 4.15213 4.18853 4.24412 4.29029 4.34868 4.38213 4.46919 4.53480 4.63899 4.79060 4.85960 4.92605 4.95496 4.98663 5.05822 5.12430 5.15299 5.20461 5.24061 5.38541 5.43660 5.47786 5.69087 5.82186 6.12321 6.23035 6.29986 6.82657 7.35168 8.88717 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.003095 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.245300 B = 9043.386631 C = 9260.312526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.638 4.638 2 S 2.419 3.581 3 O -0.988 6.988 4 O -0.979 6.979 5 C -0.556 4.556 6 H 0.153 0.847 7 C -0.097 4.097 8 C -0.100 4.100 9 C 0.042 3.958 10 N -0.523 5.523 11 C 0.064 3.936 12 C -0.126 4.126 13 C 0.028 3.972 14 C -0.545 4.545 15 H 0.056 0.944 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.263 1.263 21 H -0.281 1.281 22 C 0.055 3.945 23 C -0.097 4.097 24 H 0.153 0.847 25 H 0.140 0.860 26 H 0.156 0.844 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.046 0.954 37 H -0.010 1.010 38 H -0.008 1.008 39 H 0.264 0.736 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.314 2.933 -18.877 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.791 4.791 2 S 2.608 3.392 3 O -0.985 6.985 4 O -0.977 6.977 5 C -0.666 4.666 6 H 0.171 0.829 7 C -0.135 4.135 8 C -0.139 4.139 9 C -0.086 4.086 10 N -0.245 5.245 11 C -0.064 4.064 12 C -0.165 4.165 13 C -0.010 4.010 14 C -0.583 4.583 15 H 0.074 0.926 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.788 3.212 19 H -0.198 1.198 20 H -0.187 1.187 21 H -0.206 1.206 22 C -0.074 4.074 23 C -0.136 4.136 24 H 0.172 0.828 25 H 0.159 0.841 26 H 0.174 0.826 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.008 0.992 38 H 0.010 0.990 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.590 2.790 -19.847 25.392 hybrid contribution 0.157 0.755 2.369 2.491 sum -15.433 3.545 -17.478 23.585 Atomic orbital electron populations 1.30111 1.21411 1.14054 1.13547 1.07732 0.80326 0.74028 0.77138 1.93537 1.81327 1.36588 1.87076 1.93530 1.81032 1.67360 1.55740 1.29959 1.04706 1.09659 1.22304 0.82884 1.21074 1.01427 0.92204 0.98777 1.21918 0.97561 1.01910 0.92508 1.22069 0.88732 0.99867 0.97981 1.61912 1.02555 1.29364 1.30686 1.22259 0.97592 0.97647 0.88887 1.22060 0.99418 0.98793 0.96240 1.18925 0.93894 0.95121 0.93073 1.21694 1.26204 1.08978 1.01409 0.92569 1.25980 0.94831 0.97387 1.01609 1.70089 1.29065 1.29026 1.29065 0.85471 0.78935 0.78712 0.78083 1.19841 1.18749 1.20610 1.20926 1.00133 0.90846 0.95449 1.20407 0.91528 1.03395 0.98246 0.82829 0.84144 0.82622 0.89021 0.90779 0.89318 0.91215 0.92509 0.94009 0.91599 0.91090 0.93031 0.93547 0.99201 0.98965 0.92724 0.94184 0.91547 0.90266 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -3.15 10.25 113.37 1.16 -1.99 16 2 S 2.42 36.74 4.74 -56.49 -0.27 36.47 16 3 O -0.99 -23.37 18.03 -127.37 -2.30 -25.67 16 4 O -0.98 -22.33 17.97 -127.37 -2.29 -24.62 16 5 C -0.56 -8.13 2.25 30.28 0.07 -8.06 16 6 H 0.15 1.68 7.15 -2.39 -0.02 1.67 16 7 C -0.10 -1.28 4.82 30.21 0.15 -1.14 16 8 C -0.10 -1.48 6.15 31.39 0.19 -1.29 16 9 C 0.04 0.95 4.04 87.15 0.35 1.30 16 10 N -0.52 -13.75 4.45 -911.81 -4.06 -17.81 16 11 C 0.06 2.11 5.06 86.31 0.44 2.55 16 12 C -0.13 -5.02 4.60 30.60 0.14 -4.88 16 13 C 0.03 1.45 4.97 29.85 0.15 1.60 16 14 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 15 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 16 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 17 N -0.93 -56.92 13.28 21.45 0.28 -56.64 16 18 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 C 0.05 1.36 3.97 83.94 0.33 1.69 16 23 C -0.10 -1.98 4.92 28.91 0.14 -1.83 16 24 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 25 H 0.14 0.51 8.14 -2.39 -0.02 0.50 16 26 H 0.16 0.09 6.51 -2.39 -0.02 0.08 16 27 H 0.09 0.57 5.71 -2.38 -0.01 0.55 16 28 H 0.07 1.26 7.38 -2.39 -0.02 1.25 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.44 6.84 -2.39 -0.02 1.42 16 32 H 0.04 0.92 6.51 -2.39 -0.02 0.91 16 33 H 0.07 2.23 7.91 -2.39 -0.02 2.22 16 34 H 0.07 2.35 8.12 -2.39 -0.02 2.33 16 35 H 0.05 2.01 6.77 -2.39 -0.02 1.99 16 36 H 0.05 1.84 7.04 -2.39 -0.02 1.82 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 40 H 0.04 1.01 6.84 -2.39 -0.02 0.99 16 41 H 0.07 1.77 7.66 -2.38 -0.02 1.75 16 42 H 0.08 1.55 7.95 -2.39 -0.02 1.53 16 43 H 0.08 1.78 7.59 -2.39 -0.02 1.76 16 Total: -1.00 -77.72 339.81 -1.81 -79.53 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 0.97 Total: 4.94 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 3.82 Total: -42.49 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -3.77 Total: -74.45 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -4.58 Total: -50.29 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 36.74 SS G_CDS: -0.27 Total: 36.47 kcal Total: -77.72 -1.81 -79.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256605051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.948 kcal (2) G-P(sol) polarization free energy of solvation -77.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds