Wall clock time and date at job start Tue Mar 31 2020 05:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00421 * 2 1 4 4 H 1.09002 * 110.42816 * 27.46418 * 3 2 1 5 5 C 1.54886 * 110.48864 * 264.78142 * 3 2 1 6 6 C 1.55011 * 102.75455 * 203.36468 * 5 3 2 7 7 C 1.54266 * 104.13828 * 37.95004 * 6 5 3 8 8 H 1.09003 * 110.03788 * 217.07161 * 7 6 5 9 9 N 1.46501 * 110.03582 * 95.68515 * 7 6 5 10 10 C 1.34774 * 119.99734 * 87.09306 * 9 7 6 11 11 O 1.21608 * 120.00052 * 0.02562 * 10 9 7 12 12 C 1.47431 * 119.99802 * 179.72840 * 10 9 7 13 13 C 1.39224 * 120.28404 * 355.66468 * 12 10 9 14 14 C 1.38215 * 120.09738 * 179.97438 * 13 12 10 15 15 C 1.38831 * 120.67102 * 0.02562 * 14 13 12 16 16 C 1.37590 * 120.57456 * 0.02562 * 15 14 13 17 17 C 1.40712 * 119.87680 * 359.70167 * 16 15 14 18 18 C 1.40892 * 120.32513 * 180.30141 * 17 16 15 19 19 H 1.08006 * 119.99885 * 215.80383 * 18 17 16 20 20 C 1.40277 * 120.00090 * 35.80495 * 18 17 16 21 21 N 1.30628 * 120.00175 * 8.99043 * 20 18 17 22 22 Si 1.86798 * 119.99786 * 188.98858 * 20 18 17 23 23 H 1.48501 * 109.47143 * 60.00150 * 22 20 18 24 24 H 1.48505 * 109.47083 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47547 * 299.99789 * 22 20 18 26 26 C 1.53876 * 106.63654 * 336.37472 * 7 6 5 27 27 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46999 * 299.99821 * 1 2 3 29 29 H 1.09004 * 109.47087 * 59.99569 * 1 2 3 30 30 H 1.09000 * 110.75240 * 321.68852 * 5 3 2 31 31 H 1.08997 * 110.75955 * 84.87659 * 5 3 2 32 32 H 1.09004 * 110.50851 * 279.29882 * 6 5 3 33 33 H 1.09001 * 110.53036 * 156.61387 * 6 5 3 34 34 H 0.96999 * 119.99574 * 267.09871 * 9 7 6 35 35 H 1.08002 * 119.95121 * 359.95288 * 13 12 10 36 36 H 1.07999 * 119.66707 * 180.02562 * 14 13 12 37 37 H 1.08004 * 119.71074 * 179.97438 * 15 14 13 38 38 H 1.07996 * 120.06034 * 179.97438 * 16 15 14 39 39 H 0.96991 * 120.00195 * 180.02562 * 21 20 18 40 40 H 1.09003 * 110.03118 * 119.31095 * 26 7 6 41 41 H 1.08994 * 110.03575 * 240.73601 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3371 2.0217 0.4711 5 6 2.3514 1.7470 -1.4449 6 6 3.4607 2.8073 -1.2258 7 6 4.2950 2.2438 -0.0569 8 1 4.6259 3.0554 0.5911 9 7 5.4534 1.5113 -0.5744 10 6 6.5993 2.1670 -0.8449 11 8 6.6719 3.3666 -0.6591 12 6 7.7670 1.4288 -1.3601 13 6 7.7225 0.0429 -1.4842 14 6 8.8193 -0.6452 -1.9680 15 6 9.9746 0.0316 -2.3347 16 6 10.0491 1.4009 -2.2224 17 6 8.9444 2.1256 -1.7381 18 6 9.0081 3.5286 -1.6253 19 1 8.5137 4.0273 -0.8047 20 6 9.7137 4.2776 -2.5786 21 7 10.1615 3.7006 -3.6616 22 14 10.0128 6.1002 -2.2995 23 1 10.7904 6.2883 -1.0484 24 1 10.7763 6.6577 -3.4447 25 1 8.7101 6.8036 -2.1831 26 6 3.3731 1.2896 0.7225 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.7297 0.9063 -2.0265 31 1 1.4809 2.1893 -1.9293 32 1 3.0227 3.7676 -0.9536 33 1 4.0759 2.9073 -2.1201 34 1 5.3955 0.5544 -0.7224 35 1 6.8299 -0.4955 -1.2016 36 1 8.7771 -1.7203 -2.0618 37 1 10.8227 -0.5216 -2.7105 38 1 10.9521 1.9189 -2.5097 39 1 10.6497 4.2184 -4.3206 40 1 3.7876 0.2815 0.7157 41 1 3.2560 1.6386 1.7484 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329521746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:55 Heat of formation + Delta-G solvation = -70.347003 kcal Electronic energy + Delta-G solvation = -22857.302626 eV Core-core repulsion = 19508.407669 eV Total energy + Delta-G solvation = -3348.894957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.58558 -38.43349 -36.93735 -35.80352 -33.74020 -32.49742 -29.95128 -29.51628 -28.77003 -27.35752 -25.97517 -25.24151 -22.39654 -21.01879 -20.87392 -19.95085 -19.22985 -17.47722 -16.96970 -16.38493 -15.84246 -15.46733 -15.17719 -14.87107 -14.29037 -14.22478 -13.79886 -13.57219 -13.17456 -13.04344 -12.67178 -12.54821 -12.17129 -11.72091 -11.65257 -11.58594 -11.33702 -11.25324 -11.09733 -10.98611 -10.84910 -10.64431 -10.56283 -10.47026 -10.07143 -9.64936 -9.62642 -9.22823 -8.37480 -8.26680 -7.56033 -7.30326 -6.76911 -4.36535 2.39032 2.85074 3.11036 3.17245 3.27036 3.57626 4.00156 4.06165 4.19023 4.58686 4.61408 4.74746 4.90934 5.11174 5.14786 5.32209 5.43702 5.46958 5.54051 5.61688 5.65461 5.75504 5.82859 5.99924 6.03373 6.05215 6.17710 6.30363 6.35751 6.41235 6.66363 6.97831 7.09734 7.13412 7.21233 7.31512 7.49218 7.65181 7.91331 8.02427 8.21053 8.43806 8.71042 8.86269 8.93861 9.46897 10.19320 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.004336 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.272221 B = 6455.385242 C = 7540.570580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.082 3.918 4 H 0.068 0.932 5 C -0.143 4.143 6 C -0.133 4.133 7 C 0.149 3.851 8 H 0.089 0.911 9 N -0.741 5.741 10 C 0.565 3.435 11 O -0.540 6.540 12 C -0.261 4.261 13 C -0.057 4.057 14 C -0.245 4.245 15 C -0.096 4.096 16 C -0.148 4.148 17 C 0.148 3.852 18 C -0.423 4.423 19 H 0.110 0.890 20 C 0.069 3.931 21 N -0.795 5.795 22 Si 0.916 3.084 23 H -0.263 1.263 24 H -0.280 1.280 25 H -0.262 1.262 26 C -0.128 4.128 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.392 0.608 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.282 0.718 40 H 0.084 0.916 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.398 -3.966 4.623 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.025 3.975 4 H 0.086 0.914 5 C -0.181 4.181 6 C -0.172 4.172 7 C 0.044 3.956 8 H 0.107 0.893 9 N -0.395 5.395 10 C 0.359 3.641 11 O -0.418 6.418 12 C -0.266 4.266 13 C -0.076 4.076 14 C -0.264 4.264 15 C -0.115 4.115 16 C -0.167 4.167 17 C 0.144 3.856 18 C -0.452 4.452 19 H 0.128 0.872 20 C -0.149 4.149 21 N -0.421 5.421 22 Si 0.741 3.259 23 H -0.188 1.188 24 H -0.205 1.205 25 H -0.187 1.187 26 C -0.166 4.166 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.227 0.773 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.100 -3.187 4.545 14.228 hybrid contribution -0.175 0.398 -0.279 0.517 sum -13.275 -2.789 4.266 14.220 Atomic orbital electron populations 1.22754 0.81455 1.02520 0.99788 1.87926 1.19338 1.27916 1.94961 1.23081 0.94484 0.84105 0.95866 0.91432 1.22985 0.98819 0.99607 0.96680 1.22765 0.96785 0.97618 1.00033 1.21236 0.85717 0.94312 0.94384 0.89311 1.46174 1.12284 1.11352 1.69735 1.18409 0.81990 0.86935 0.76716 1.90642 1.83471 1.14804 1.52928 1.19487 0.94971 0.92769 1.19343 1.20662 0.96412 0.93264 0.97264 1.20289 0.95852 0.97471 1.12783 1.20797 0.96561 0.94877 0.99244 1.21336 0.98967 0.92260 1.04103 1.17477 0.88375 0.93354 0.86405 1.20266 1.24213 0.91800 1.08882 0.87234 1.26136 0.92719 1.01682 0.94329 1.69709 1.26925 1.38775 1.06671 0.86222 0.79480 0.81557 0.78657 1.18767 1.20545 1.18678 1.22502 0.93840 1.01293 0.99010 0.89847 0.94208 0.94165 0.90456 0.91795 0.91158 0.90345 0.77332 0.89219 0.89112 0.89116 0.86704 0.90736 0.89766 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.36 16 2 O -0.38 -4.47 10.41 -35.23 -0.37 -4.84 16 3 C 0.08 0.92 3.35 -25.08 -0.08 0.83 16 4 H 0.07 0.65 7.82 -51.93 -0.41 0.24 16 5 C -0.14 -1.70 6.62 -24.67 -0.16 -1.87 16 6 C -0.13 -1.88 6.54 -25.01 -0.16 -2.05 16 7 C 0.15 2.25 3.23 -66.81 -0.22 2.04 16 8 H 0.09 1.47 7.59 -51.93 -0.39 1.08 16 9 N -0.74 -13.19 4.99 -53.79 -0.27 -13.46 16 10 C 0.57 13.04 7.72 -12.52 -0.10 12.94 16 11 O -0.54 -14.04 13.19 5.27 0.07 -13.97 16 12 C -0.26 -6.40 5.92 -104.37 -0.62 -7.02 16 13 C -0.06 -1.23 9.52 -39.22 -0.37 -1.61 16 14 C -0.24 -5.26 10.03 -39.37 -0.39 -5.65 16 15 C -0.10 -2.18 10.01 -39.60 -0.40 -2.58 16 16 C -0.15 -3.77 8.62 -38.88 -0.34 -4.11 16 17 C 0.15 3.99 5.48 -106.54 -0.58 3.41 16 18 C -0.42 -11.70 7.78 -37.81 -0.29 -11.99 16 19 H 0.11 3.13 5.73 -52.48 -0.30 2.83 16 20 C 0.07 1.80 5.25 -17.30 -0.09 1.71 16 21 N -0.80 -20.81 11.25 55.56 0.63 -20.18 16 22 Si 0.92 19.79 29.57 -169.99 -5.03 14.77 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.13 -1.55 6.33 -25.62 -0.16 -1.71 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.28 8.11 -51.93 -0.42 -0.14 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.32 8.04 -51.93 -0.42 0.91 16 34 H 0.39 6.26 6.36 -40.82 -0.26 6.00 16 35 H 0.09 1.61 6.42 -52.49 -0.34 1.28 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 38 H 0.12 3.00 6.72 -52.49 -0.35 2.64 16 39 H 0.28 6.73 8.29 -40.82 -0.34 6.39 16 40 H 0.08 1.05 7.53 -51.93 -0.39 0.66 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -29.99 335.56 -8.58 -38.58 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.80 Total: 10.35 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -2.88 Total: -16.30 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.36 Total: -33.65 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.30 Total: -18.81 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.99 -8.58 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329521746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.771 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds