Wall clock time and date at job start Tue Mar 31 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00421 * 2 1 4 4 H 1.09002 * 110.42816 * 27.46418 * 3 2 1 5 5 C 1.54886 * 110.48864 * 264.78142 * 3 2 1 6 6 C 1.55011 * 102.75455 * 203.36468 * 5 3 2 7 7 C 1.54266 * 104.13828 * 37.95004 * 6 5 3 8 8 H 1.09003 * 110.03788 * 217.07161 * 7 6 5 9 9 N 1.46501 * 110.03582 * 95.68515 * 7 6 5 10 10 C 1.34774 * 119.99734 * 87.09306 * 9 7 6 11 11 O 1.21608 * 120.00052 * 0.02562 * 10 9 7 12 12 C 1.47431 * 119.99802 * 179.72840 * 10 9 7 13 13 C 1.39224 * 120.28404 * 355.66468 * 12 10 9 14 14 C 1.38215 * 120.09738 * 179.97438 * 13 12 10 15 15 C 1.38831 * 120.67102 * 0.02562 * 14 13 12 16 16 C 1.37590 * 120.57456 * 0.02562 * 15 14 13 17 17 C 1.40712 * 119.87680 * 359.70167 * 16 15 14 18 18 C 1.40892 * 120.32513 * 180.30141 * 17 16 15 19 19 H 1.08006 * 119.99885 * 215.80383 * 18 17 16 20 20 C 1.40277 * 120.00090 * 35.80495 * 18 17 16 21 21 N 1.30628 * 120.00175 * 8.99043 * 20 18 17 22 22 Si 1.86798 * 119.99786 * 188.98858 * 20 18 17 23 23 H 1.48501 * 109.47143 * 60.00150 * 22 20 18 24 24 H 1.48505 * 109.47083 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47547 * 299.99789 * 22 20 18 26 26 C 1.53876 * 106.63654 * 336.37472 * 7 6 5 27 27 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46999 * 299.99821 * 1 2 3 29 29 H 1.09004 * 109.47087 * 59.99569 * 1 2 3 30 30 H 1.09000 * 110.75240 * 321.68852 * 5 3 2 31 31 H 1.08997 * 110.75955 * 84.87659 * 5 3 2 32 32 H 1.09004 * 110.50851 * 279.29882 * 6 5 3 33 33 H 1.09001 * 110.53036 * 156.61387 * 6 5 3 34 34 H 0.96999 * 119.99574 * 267.09871 * 9 7 6 35 35 H 1.08002 * 119.95121 * 359.95288 * 13 12 10 36 36 H 1.07999 * 119.66707 * 180.02562 * 14 13 12 37 37 H 1.08004 * 119.71074 * 179.97438 * 15 14 13 38 38 H 1.07996 * 120.06034 * 179.97438 * 16 15 14 39 39 H 0.96991 * 120.00195 * 180.02562 * 21 20 18 40 40 H 1.09003 * 110.03118 * 119.31095 * 26 7 6 41 41 H 1.08994 * 110.03575 * 240.73601 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3371 2.0217 0.4711 5 6 2.3514 1.7470 -1.4449 6 6 3.4607 2.8073 -1.2258 7 6 4.2950 2.2438 -0.0569 8 1 4.6259 3.0554 0.5911 9 7 5.4534 1.5113 -0.5744 10 6 6.5993 2.1670 -0.8449 11 8 6.6719 3.3666 -0.6591 12 6 7.7670 1.4288 -1.3601 13 6 7.7225 0.0429 -1.4842 14 6 8.8193 -0.6452 -1.9680 15 6 9.9746 0.0316 -2.3347 16 6 10.0491 1.4009 -2.2224 17 6 8.9444 2.1256 -1.7381 18 6 9.0081 3.5286 -1.6253 19 1 8.5137 4.0273 -0.8047 20 6 9.7137 4.2776 -2.5786 21 7 10.1615 3.7006 -3.6616 22 14 10.0128 6.1002 -2.2995 23 1 10.7904 6.2883 -1.0484 24 1 10.7763 6.6577 -3.4447 25 1 8.7101 6.8036 -2.1831 26 6 3.3731 1.2896 0.7225 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.7297 0.9063 -2.0265 31 1 1.4809 2.1893 -1.9293 32 1 3.0227 3.7676 -0.9536 33 1 4.0759 2.9073 -2.1201 34 1 5.3955 0.5544 -0.7224 35 1 6.8299 -0.4955 -1.2016 36 1 8.7771 -1.7203 -2.0618 37 1 10.8227 -0.5216 -2.7105 38 1 10.9521 1.9189 -2.5097 39 1 10.6497 4.2184 -4.3206 40 1 3.7876 0.2815 0.7157 41 1 3.2560 1.6386 1.7484 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329521746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:54 Heat of formation + Delta-G solvation = -88.730375 kcal Electronic energy + Delta-G solvation = -22858.099789 eV Core-core repulsion = 19508.407669 eV Total energy + Delta-G solvation = -3349.692120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.01315 -39.75995 -38.53135 -37.10701 -35.60605 -34.02923 -31.78947 -31.28849 -29.76130 -28.47114 -27.23654 -26.68176 -24.12802 -22.80876 -21.94471 -21.29934 -20.81609 -19.33035 -18.01928 -17.91250 -17.10761 -16.89398 -16.69761 -15.97038 -15.79134 -15.60130 -15.29823 -15.12276 -14.80504 -14.47399 -14.27847 -13.90499 -13.49570 -13.41088 -12.94125 -12.85441 -12.64970 -12.62495 -12.43269 -12.38253 -12.28254 -12.18156 -12.00366 -11.83206 -11.55164 -11.44993 -11.12706 -10.45080 -10.19342 -9.88920 -9.38486 -9.19846 -8.66607 -6.36151 0.53192 1.02674 1.33443 1.45113 1.51132 2.21558 2.36793 2.46655 2.80937 2.90265 3.57534 3.60957 3.74582 3.99768 4.28743 4.32105 4.38682 4.42038 4.49688 4.53314 4.54211 4.60578 4.65810 4.69905 4.85622 4.88925 4.93366 5.02179 5.07691 5.12423 5.22404 5.23863 5.27803 5.35129 5.62908 5.79134 5.84087 6.06966 6.12565 6.33572 6.36003 6.66863 6.82402 6.93961 7.03498 7.71083 8.31647 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.004336 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.272221 B = 6455.385242 C = 7540.570580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.090 3.910 4 H 0.090 0.910 5 C -0.135 4.135 6 C -0.132 4.132 7 C 0.143 3.857 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.561 3.439 11 O -0.578 6.578 12 C -0.280 4.280 13 C -0.055 4.055 14 C -0.236 4.236 15 C -0.092 4.092 16 C -0.177 4.177 17 C 0.117 3.883 18 C -0.465 4.465 19 H 0.087 0.913 20 C 0.032 3.968 21 N -0.826 5.826 22 Si 0.978 3.022 23 H -0.258 1.258 24 H -0.260 1.260 25 H -0.272 1.272 26 C -0.120 4.120 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.403 0.597 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.289 0.711 40 H 0.083 0.917 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.355 -5.721 5.110 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.032 3.968 4 H 0.108 0.892 5 C -0.173 4.173 6 C -0.170 4.170 7 C 0.038 3.962 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.354 3.646 11 O -0.460 6.460 12 C -0.285 4.285 13 C -0.074 4.074 14 C -0.255 4.255 15 C -0.111 4.111 16 C -0.196 4.196 17 C 0.113 3.887 18 C -0.494 4.494 19 H 0.105 0.895 20 C -0.183 4.183 21 N -0.452 5.452 22 Si 0.800 3.200 23 H -0.182 1.182 24 H -0.184 1.184 25 H -0.197 1.197 26 C -0.158 4.158 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.240 0.760 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.088 -4.996 5.035 16.672 hybrid contribution 0.308 0.727 -0.398 0.884 sum -14.780 -4.269 4.637 16.068 Atomic orbital electron populations 1.22969 0.79689 1.03720 1.00830 1.87895 1.21309 1.27907 1.95009 1.23001 0.94288 0.84721 0.94824 0.89210 1.22923 0.98397 0.98324 0.97644 1.22695 0.97054 0.99266 0.98028 1.21455 0.85259 0.94623 0.94893 0.91145 1.45976 1.11584 1.11825 1.68163 1.18407 0.83111 0.86507 0.76579 1.90618 1.84289 1.16427 1.54634 1.19897 0.95030 0.94480 1.19087 1.21068 0.98137 0.92087 0.96071 1.20803 0.94733 0.99523 1.10401 1.21176 0.98197 0.93871 0.97848 1.21286 0.98340 0.93686 1.06320 1.17856 0.89708 0.93742 0.87355 1.20234 1.26595 0.92756 1.09783 0.89479 1.26814 0.92194 1.05565 0.93721 1.69738 1.27931 1.40288 1.07256 0.85314 0.78931 0.76470 0.79308 1.18197 1.18405 1.19745 1.22432 0.93676 1.00166 0.99511 0.88711 0.92830 0.93431 0.91630 0.89910 0.89858 0.93730 0.76015 0.85203 0.84987 0.86214 0.88430 0.90085 0.89856 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.85 113.37 1.23 1.55 16 2 O -0.40 -8.14 10.41 -148.98 -1.55 -9.69 16 3 C 0.09 1.72 3.35 31.67 0.11 1.83 16 4 H 0.09 1.36 7.82 -2.39 -0.02 1.34 16 5 C -0.14 -2.94 6.62 31.93 0.21 -2.73 16 6 C -0.13 -3.66 6.54 31.71 0.21 -3.45 16 7 C 0.14 4.22 3.23 45.72 0.15 4.37 16 8 H 0.07 2.36 7.59 -2.39 -0.02 2.35 16 9 N -0.72 -25.46 4.99 -442.35 -2.21 -27.66 16 10 C 0.56 26.55 7.72 86.67 0.67 27.22 16 11 O -0.58 -31.66 13.19 -4.05 -0.05 -31.72 16 12 C -0.28 -13.96 5.92 -19.70 -0.12 -14.07 16 13 C -0.06 -2.26 9.52 22.50 0.21 -2.05 16 14 C -0.24 -9.40 10.03 22.41 0.22 -9.18 16 15 C -0.09 -4.08 10.01 22.26 0.22 -3.86 16 16 C -0.18 -9.31 8.62 22.72 0.20 -9.11 16 17 C 0.12 6.58 5.48 -21.11 -0.12 6.46 16 18 C -0.46 -27.24 7.78 23.42 0.18 -27.06 16 19 H 0.09 5.36 5.73 -2.91 -0.02 5.34 16 20 C 0.03 1.71 5.25 85.37 0.45 2.16 16 21 N -0.83 -44.98 11.25 21.88 0.25 -44.73 16 22 Si 0.98 42.33 29.57 68.60 2.03 44.36 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C -0.12 -2.61 6.33 31.32 0.20 -2.41 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 0.57 8.11 -2.39 -0.02 0.55 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 34 H 0.40 12.18 6.36 -92.71 -0.59 11.59 16 35 H 0.13 4.20 6.42 -2.91 -0.02 4.18 16 36 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 38 H 0.10 5.35 6.72 -2.91 -0.02 5.33 16 39 H 0.29 14.23 8.29 -92.71 -0.77 13.46 16 40 H 0.08 1.86 7.53 -2.39 -0.02 1.84 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -69.11 335.56 2.94 -66.17 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.45 Total: 33.59 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 4.03 Total: -30.33 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.96 Total: -72.39 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -1.60 Total: -41.41 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -69.11 2.94 -66.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329521746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.559 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds