Wall clock time and date at job start Tue Mar 31 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42912 * 113.99508 * 2 1 4 4 H 1.08996 * 110.81701 * 328.11556 * 3 2 1 5 5 C 1.54890 * 110.75455 * 91.45199 * 3 2 1 6 6 C 1.54260 * 104.31065 * 156.32311 * 5 3 2 7 7 C 1.53873 * 106.59854 * 336.32132 * 6 5 3 8 8 H 1.09004 * 110.03686 * 240.71336 * 7 6 5 9 9 N 1.46502 * 110.03167 * 119.28911 * 7 6 5 10 10 C 1.34773 * 120.00466 * 86.45036 * 9 7 6 11 11 O 1.21611 * 119.99867 * 0.02562 * 10 9 7 12 12 C 1.47429 * 120.00182 * 180.02562 * 10 9 7 13 13 C 1.39223 * 120.28383 * 355.34751 * 12 10 9 14 14 C 1.38220 * 120.09648 * 180.02562 * 13 12 10 15 15 C 1.38831 * 120.67125 * 359.97438 * 14 13 12 16 16 C 1.37596 * 120.57252 * 0.04038 * 15 14 13 17 17 C 1.40709 * 119.88244 * 359.68618 * 16 15 14 18 18 C 1.40888 * 120.33119 * 180.29705 * 17 16 15 19 19 H 1.07997 * 119.99821 * 215.82351 * 18 17 16 20 20 C 1.40274 * 119.99907 * 35.81192 * 18 17 16 21 21 N 1.30622 * 120.00195 * 8.98535 * 20 18 17 22 22 Si 1.86801 * 119.99827 * 188.98170 * 20 18 17 23 23 H 1.48498 * 109.46951 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47152 * 120.00455 * 22 20 18 25 25 H 1.48500 * 109.46894 * 240.00523 * 22 20 18 26 26 C 1.54257 * 106.59955 * 0.02562 * 7 6 5 27 27 H 1.08998 * 109.46438 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47492 * 300.00052 * 1 2 3 29 29 H 1.08995 * 109.47235 * 60.00522 * 1 2 3 30 30 H 1.09000 * 110.48535 * 37.57826 * 5 3 2 31 31 H 1.08998 * 110.48296 * 275.06644 * 5 3 2 32 32 H 1.08999 * 110.03461 * 95.61237 * 6 5 3 33 33 H 1.09003 * 110.03044 * 216.99011 * 6 5 3 34 34 H 0.97003 * 119.99599 * 266.45732 * 9 7 6 35 35 H 1.07998 * 119.95506 * 359.97438 * 13 12 10 36 36 H 1.07995 * 119.66999 * 179.97438 * 14 13 12 37 37 H 1.08000 * 119.71089 * 180.02562 * 15 14 13 38 38 H 1.08004 * 120.05961 * 179.97438 * 16 15 14 39 39 H 0.97001 * 120.00275 * 179.97438 * 21 20 18 40 40 H 1.09004 * 110.49210 * 142.28981 * 26 7 6 41 41 H 1.09005 * 110.48718 * 264.92715 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3774 2.0113 -0.5381 5 6 2.2669 1.7921 1.4479 6 6 3.3877 2.8423 1.3042 7 6 4.1331 2.5138 -0.0012 8 1 5.1783 2.2895 0.2119 9 7 4.0411 3.6434 -0.9295 10 6 4.9386 4.6465 -0.8615 11 8 5.8252 4.6138 -0.0298 12 6 4.8456 5.7835 -1.7954 13 6 3.8937 5.7815 -2.8114 14 6 3.8102 6.8493 -3.6851 15 6 4.6690 7.9332 -3.5628 16 6 5.6203 7.9638 -2.5691 17 6 5.7223 6.8921 -1.6630 18 6 6.6887 6.9164 -0.6381 19 1 7.1769 6.0022 -0.3345 20 6 7.0169 8.1281 -0.0123 21 7 6.3091 9.1996 -0.2516 22 14 8.4662 8.2095 1.1634 23 1 9.0995 6.8699 1.2619 24 1 9.4598 9.1902 0.6573 25 1 7.9918 8.6331 2.5053 26 6 3.4390 1.2759 -0.6055 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 2.5978 0.9645 2.0754 31 1 1.3677 2.2480 1.8622 32 1 2.9574 3.8422 1.2471 33 1 4.0705 2.7779 2.1514 34 1 3.3340 3.6694 -1.5931 35 1 3.2200 4.9441 -2.9175 36 1 3.0695 6.8404 -4.4709 37 1 4.5899 8.7595 -4.2538 38 1 6.2844 8.8110 -2.4818 39 1 6.5358 10.0374 0.1815 40 1 3.3948 1.3554 -1.6917 41 1 3.9589 0.3646 -0.3097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329521747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:58 Heat of formation + Delta-G solvation = -70.665992 kcal Electronic energy + Delta-G solvation = -22853.783304 eV Core-core repulsion = 19504.874515 eV Total energy + Delta-G solvation = -3348.908789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.59106 -38.43550 -36.96030 -35.83149 -33.76684 -32.54022 -29.98038 -29.55003 -28.76043 -27.33193 -26.00175 -25.27969 -22.40172 -21.03804 -20.76923 -19.95295 -19.45024 -17.49269 -17.00476 -16.24853 -15.91402 -15.49340 -15.17724 -14.99927 -14.25830 -14.01689 -13.84868 -13.50109 -13.30151 -13.16219 -12.72235 -12.66261 -12.24761 -11.76575 -11.66620 -11.51474 -11.47143 -11.17620 -11.14250 -11.00242 -10.68148 -10.62045 -10.60358 -10.49230 -10.07175 -9.67427 -9.64065 -9.27214 -8.40914 -8.30761 -7.59285 -7.33167 -6.79380 -4.38950 2.35749 2.80183 3.11475 3.20783 3.22686 3.60018 3.95788 3.99424 4.16687 4.54163 4.61552 4.71868 4.96553 5.14709 5.16326 5.32388 5.43906 5.46122 5.58465 5.61086 5.63347 5.71569 5.78779 5.98178 6.02666 6.05713 6.10726 6.27622 6.36123 6.40860 6.63752 6.94768 7.08144 7.10485 7.17916 7.27747 7.46195 7.61691 7.88188 7.99733 8.18269 8.40055 8.69137 8.84085 8.91491 9.43975 10.16796 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.004357 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.565042 B = 6424.996741 C = 7530.221137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.079 3.921 4 H 0.070 0.930 5 C -0.144 4.144 6 C -0.133 4.133 7 C 0.149 3.851 8 H 0.091 0.909 9 N -0.743 5.743 10 C 0.565 3.435 11 O -0.538 6.538 12 C -0.261 4.261 13 C -0.058 4.058 14 C -0.245 4.245 15 C -0.096 4.096 16 C -0.147 4.147 17 C 0.147 3.853 18 C -0.422 4.422 19 H 0.111 0.889 20 C 0.069 3.931 21 N -0.795 5.795 22 Si 0.915 3.085 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.124 4.124 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.390 0.610 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.281 0.719 40 H 0.077 0.923 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.400 -10.955 0.233 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.022 3.978 4 H 0.088 0.912 5 C -0.182 4.182 6 C -0.172 4.172 7 C 0.043 3.957 8 H 0.109 0.891 9 N -0.398 5.398 10 C 0.360 3.640 11 O -0.416 6.416 12 C -0.266 4.266 13 C -0.077 4.077 14 C -0.264 4.264 15 C -0.115 4.115 16 C -0.166 4.166 17 C 0.143 3.857 18 C -0.450 4.450 19 H 0.129 0.871 20 C -0.149 4.149 21 N -0.420 5.420 22 Si 0.740 3.260 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.162 4.162 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.225 0.775 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.637 -10.895 0.922 13.337 hybrid contribution -0.274 0.541 0.236 0.651 sum -7.911 -10.354 1.159 13.082 Atomic orbital electron populations 1.22751 0.81361 1.02467 0.99983 1.87888 1.19429 1.27849 1.94973 1.23289 0.94577 0.84032 0.95941 0.91247 1.22838 0.99053 0.99212 0.97106 1.22554 0.97092 0.99153 0.98367 1.21247 1.00367 0.85215 0.88856 0.89096 1.46176 1.33598 1.22360 1.37656 1.18408 0.80355 0.81629 0.83656 1.90649 1.34806 1.77811 1.38354 1.19486 1.04339 0.99994 1.02759 1.20645 0.95926 0.96402 0.94696 1.20283 1.05090 0.97216 1.03813 1.20798 0.96146 0.96646 0.97906 1.21344 1.00220 1.00241 0.94796 1.17492 0.88761 0.88840 0.90587 1.20349 1.16165 0.95095 1.13428 0.87101 1.26143 0.96630 0.94756 0.97383 1.69722 1.34731 1.01125 1.36420 0.86129 0.80770 0.79602 0.79543 1.17968 1.19909 1.19969 1.22726 0.94151 0.98683 1.00650 0.89861 0.94127 0.94070 0.90737 0.91843 0.90824 0.90991 0.77545 0.89314 0.89133 0.89104 0.86687 0.90824 0.90440 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.89 101.05 1.10 1.36 16 2 O -0.38 -4.43 10.50 -35.23 -0.37 -4.80 16 3 C 0.08 0.90 3.36 -24.56 -0.08 0.82 16 4 H 0.07 0.75 7.89 -51.93 -0.41 0.34 16 5 C -0.14 -1.67 6.54 -25.08 -0.16 -1.83 16 6 C -0.13 -1.88 6.59 -25.62 -0.17 -2.05 16 7 C 0.15 2.23 3.23 -66.82 -0.22 2.01 16 8 H 0.09 1.52 7.61 -51.93 -0.40 1.12 16 9 N -0.74 -12.87 4.89 -53.80 -0.26 -13.13 16 10 C 0.57 12.86 7.71 -12.52 -0.10 12.76 16 11 O -0.54 -13.90 13.20 5.27 0.07 -13.83 16 12 C -0.26 -6.31 5.92 -104.37 -0.62 -6.93 16 13 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 14 C -0.24 -5.16 10.03 -39.37 -0.39 -5.55 16 15 C -0.10 -2.16 10.01 -39.60 -0.40 -2.55 16 16 C -0.15 -3.72 8.62 -38.88 -0.34 -4.05 16 17 C 0.15 3.94 5.48 -106.54 -0.58 3.35 16 18 C -0.42 -11.59 7.78 -37.81 -0.29 -11.88 16 19 H 0.11 3.17 5.73 -52.49 -0.30 2.87 16 20 C 0.07 1.77 5.25 -17.30 -0.09 1.68 16 21 N -0.79 -20.63 11.25 55.56 0.63 -20.00 16 22 Si 0.92 19.69 29.57 -169.99 -5.03 14.67 16 23 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 C -0.12 -1.49 6.17 -24.90 -0.15 -1.64 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.32 8.11 -51.93 -0.42 -0.11 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.17 7.92 -51.93 -0.41 0.76 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.39 5.88 6.61 -40.82 -0.27 5.61 16 35 H 0.09 1.53 6.42 -52.49 -0.34 1.19 16 36 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.12 2.98 6.72 -52.48 -0.35 2.62 16 39 H 0.28 6.62 8.29 -40.82 -0.34 6.28 16 40 H 0.08 0.89 7.97 -51.93 -0.41 0.47 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -29.74 336.07 -8.60 -38.33 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.83 Total: 9.80 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -2.87 Total: -16.10 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.36 Total: -33.14 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.30 Total: -18.63 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.74 -8.60 -38.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329521747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.333 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds