Wall clock time and date at job start Tue Mar 31 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42912 * 113.99508 * 2 1 4 4 H 1.08996 * 110.81701 * 328.11556 * 3 2 1 5 5 C 1.54890 * 110.75455 * 91.45199 * 3 2 1 6 6 C 1.54260 * 104.31065 * 156.32311 * 5 3 2 7 7 C 1.53873 * 106.59854 * 336.32132 * 6 5 3 8 8 H 1.09004 * 110.03686 * 240.71336 * 7 6 5 9 9 N 1.46502 * 110.03167 * 119.28911 * 7 6 5 10 10 C 1.34773 * 120.00466 * 86.45036 * 9 7 6 11 11 O 1.21611 * 119.99867 * 0.02562 * 10 9 7 12 12 C 1.47429 * 120.00182 * 180.02562 * 10 9 7 13 13 C 1.39223 * 120.28383 * 355.34751 * 12 10 9 14 14 C 1.38220 * 120.09648 * 180.02562 * 13 12 10 15 15 C 1.38831 * 120.67125 * 359.97438 * 14 13 12 16 16 C 1.37596 * 120.57252 * 0.04038 * 15 14 13 17 17 C 1.40709 * 119.88244 * 359.68618 * 16 15 14 18 18 C 1.40888 * 120.33119 * 180.29705 * 17 16 15 19 19 H 1.07997 * 119.99821 * 215.82351 * 18 17 16 20 20 C 1.40274 * 119.99907 * 35.81192 * 18 17 16 21 21 N 1.30622 * 120.00195 * 8.98535 * 20 18 17 22 22 Si 1.86801 * 119.99827 * 188.98170 * 20 18 17 23 23 H 1.48498 * 109.46951 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47152 * 120.00455 * 22 20 18 25 25 H 1.48500 * 109.46894 * 240.00523 * 22 20 18 26 26 C 1.54257 * 106.59955 * 0.02562 * 7 6 5 27 27 H 1.08998 * 109.46438 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47492 * 300.00052 * 1 2 3 29 29 H 1.08995 * 109.47235 * 60.00522 * 1 2 3 30 30 H 1.09000 * 110.48535 * 37.57826 * 5 3 2 31 31 H 1.08998 * 110.48296 * 275.06644 * 5 3 2 32 32 H 1.08999 * 110.03461 * 95.61237 * 6 5 3 33 33 H 1.09003 * 110.03044 * 216.99011 * 6 5 3 34 34 H 0.97003 * 119.99599 * 266.45732 * 9 7 6 35 35 H 1.07998 * 119.95506 * 359.97438 * 13 12 10 36 36 H 1.07995 * 119.66999 * 179.97438 * 14 13 12 37 37 H 1.08000 * 119.71089 * 180.02562 * 15 14 13 38 38 H 1.08004 * 120.05961 * 179.97438 * 16 15 14 39 39 H 0.97001 * 120.00275 * 179.97438 * 21 20 18 40 40 H 1.09004 * 110.49210 * 142.28981 * 26 7 6 41 41 H 1.09005 * 110.48718 * 264.92715 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3774 2.0113 -0.5381 5 6 2.2669 1.7921 1.4479 6 6 3.3877 2.8423 1.3042 7 6 4.1331 2.5138 -0.0012 8 1 5.1783 2.2895 0.2119 9 7 4.0411 3.6434 -0.9295 10 6 4.9386 4.6465 -0.8615 11 8 5.8252 4.6138 -0.0298 12 6 4.8456 5.7835 -1.7954 13 6 3.8937 5.7815 -2.8114 14 6 3.8102 6.8493 -3.6851 15 6 4.6690 7.9332 -3.5628 16 6 5.6203 7.9638 -2.5691 17 6 5.7223 6.8921 -1.6630 18 6 6.6887 6.9164 -0.6381 19 1 7.1769 6.0022 -0.3345 20 6 7.0169 8.1281 -0.0123 21 7 6.3091 9.1996 -0.2516 22 14 8.4662 8.2095 1.1634 23 1 9.0995 6.8699 1.2619 24 1 9.4598 9.1902 0.6573 25 1 7.9918 8.6331 2.5053 26 6 3.4390 1.2759 -0.6055 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 2.5978 0.9645 2.0754 31 1 1.3677 2.2480 1.8622 32 1 2.9574 3.8422 1.2471 33 1 4.0705 2.7779 2.1514 34 1 3.3340 3.6694 -1.5931 35 1 3.2200 4.9441 -2.9175 36 1 3.0695 6.8404 -4.4709 37 1 4.5899 8.7595 -4.2538 38 1 6.2844 8.8110 -2.4818 39 1 6.5358 10.0374 0.1815 40 1 3.3948 1.3554 -1.6917 41 1 3.9589 0.3646 -0.3097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329521747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:56 Heat of formation + Delta-G solvation = -88.736639 kcal Electronic energy + Delta-G solvation = -22854.566906 eV Core-core repulsion = 19504.874515 eV Total energy + Delta-G solvation = -3349.692392 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01764 -39.74996 -38.52933 -37.13087 -35.60760 -34.05442 -31.78866 -31.29292 -29.75812 -28.46717 -27.21778 -26.73578 -24.11416 -22.80088 -21.72633 -21.34823 -21.05596 -19.32852 -18.19900 -17.63215 -17.14189 -17.01353 -16.65895 -15.95435 -15.78574 -15.63590 -15.36203 -15.01527 -14.62351 -14.48102 -14.36918 -13.93973 -13.71122 -13.44198 -12.96956 -12.86961 -12.81433 -12.56192 -12.40571 -12.31821 -12.24951 -12.19757 -11.95553 -11.77049 -11.53317 -11.45705 -11.13696 -10.49112 -10.19736 -9.91014 -9.38324 -9.19541 -8.67032 -6.36192 0.53197 1.01630 1.33313 1.47144 1.49470 2.21709 2.36467 2.48992 2.78239 2.82622 3.52692 3.61023 3.74300 4.05572 4.27328 4.31681 4.32776 4.41258 4.48259 4.52679 4.58795 4.62118 4.64955 4.66251 4.83825 4.90283 4.92251 5.02797 5.08549 5.10979 5.20551 5.25229 5.27976 5.35319 5.63278 5.77276 5.83671 6.07326 6.12911 6.30148 6.36467 6.67706 6.82736 6.94323 7.03944 7.71357 8.31384 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.004357 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.565042 B = 6424.996741 C = 7530.221137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.085 3.915 4 H 0.081 0.919 5 C -0.134 4.134 6 C -0.131 4.131 7 C 0.145 3.855 8 H 0.068 0.932 9 N -0.721 5.721 10 C 0.561 3.439 11 O -0.578 6.578 12 C -0.279 4.279 13 C -0.054 4.054 14 C -0.235 4.235 15 C -0.093 4.093 16 C -0.177 4.177 17 C 0.116 3.884 18 C -0.464 4.464 19 H 0.087 0.913 20 C 0.032 3.968 21 N -0.825 5.825 22 Si 0.977 3.023 23 H -0.270 1.270 24 H -0.255 1.255 25 H -0.267 1.267 26 C -0.114 4.114 27 H 0.098 0.902 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.405 0.595 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.288 0.712 40 H 0.089 0.911 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.839 -12.249 -0.921 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.027 3.973 4 H 0.099 0.901 5 C -0.172 4.172 6 C -0.170 4.170 7 C 0.040 3.960 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.354 3.646 11 O -0.460 6.460 12 C -0.284 4.284 13 C -0.073 4.073 14 C -0.254 4.254 15 C -0.111 4.111 16 C -0.196 4.196 17 C 0.113 3.887 18 C -0.493 4.493 19 H 0.104 0.896 20 C -0.183 4.183 21 N -0.452 5.452 22 Si 0.798 3.202 23 H -0.194 1.194 24 H -0.179 1.179 25 H -0.192 1.192 26 C -0.152 4.152 27 H 0.116 0.884 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.242 0.758 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.127 -12.212 -0.260 15.867 hybrid contribution 0.303 0.818 0.467 0.990 sum -9.824 -11.394 0.207 15.046 Atomic orbital electron populations 1.22965 0.79707 1.03802 1.00779 1.87865 1.21243 1.27558 1.95024 1.23199 0.94204 0.84519 0.95377 0.90129 1.22770 0.98267 0.98344 0.97863 1.22469 0.97778 0.99161 0.97560 1.21386 0.99830 0.85632 0.89190 0.91371 1.45919 1.32360 1.21447 1.37814 1.18425 0.80719 0.82398 0.83061 1.90631 1.36695 1.78831 1.39812 1.19888 1.04702 0.99814 1.03986 1.21080 0.95228 0.97876 0.93094 1.20812 1.04619 0.95932 1.03994 1.21181 0.94961 0.97997 0.96987 1.21282 1.01914 1.00027 0.96425 1.17865 0.89506 0.90470 0.90881 1.20282 1.18461 0.95039 1.15528 0.89560 1.26788 0.98747 0.94143 0.98574 1.69744 1.36004 1.01604 1.37838 0.85236 0.78014 0.79063 0.77849 1.19389 1.17949 1.19177 1.22633 0.94518 0.96909 1.01151 0.88395 0.93487 0.93095 0.90317 0.90596 0.92664 0.91956 0.75826 0.84849 0.84881 0.86283 0.88540 0.90131 0.89279 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.89 113.37 1.23 1.55 16 2 O -0.40 -7.97 10.50 -148.98 -1.56 -9.53 16 3 C 0.08 1.68 3.36 32.00 0.11 1.79 16 4 H 0.08 1.44 7.89 -2.39 -0.02 1.42 16 5 C -0.13 -2.84 6.54 31.67 0.21 -2.64 16 6 C -0.13 -3.67 6.59 31.32 0.21 -3.46 16 7 C 0.14 4.25 3.23 45.71 0.15 4.40 16 8 H 0.07 2.34 7.61 -2.39 -0.02 2.32 16 9 N -0.72 -24.26 4.89 -442.37 -2.16 -26.43 16 10 C 0.56 25.96 7.71 86.66 0.67 26.62 16 11 O -0.58 -31.45 13.20 -4.06 -0.05 -31.50 16 12 C -0.28 -13.56 5.92 -19.70 -0.12 -13.67 16 13 C -0.05 -2.13 9.52 22.50 0.21 -1.92 16 14 C -0.23 -9.02 10.03 22.41 0.22 -8.80 16 15 C -0.09 -4.01 10.01 22.26 0.22 -3.78 16 16 C -0.18 -9.18 8.62 22.72 0.20 -8.99 16 17 C 0.12 6.45 5.48 -21.11 -0.12 6.34 16 18 C -0.46 -27.03 7.78 23.41 0.18 -26.85 16 19 H 0.09 5.32 5.73 -2.91 -0.02 5.30 16 20 C 0.03 1.72 5.25 85.37 0.45 2.17 16 21 N -0.83 -44.61 11.25 21.88 0.25 -44.36 16 22 Si 0.98 42.29 29.57 68.60 2.03 44.32 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 C -0.11 -2.48 6.17 31.78 0.20 -2.29 16 27 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.60 8.11 -2.39 -0.02 0.58 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.75 7.92 -2.39 -0.02 1.73 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.40 11.05 6.61 -92.71 -0.61 10.44 16 35 H 0.13 3.96 6.42 -2.91 -0.02 3.94 16 36 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 37 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 38 H 0.10 5.24 6.72 -2.91 -0.02 5.22 16 39 H 0.29 14.04 8.29 -92.71 -0.77 13.27 16 40 H 0.09 1.76 7.97 -2.38 -0.02 1.74 16 41 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -68.46 336.07 2.94 -65.52 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.43 Total: 31.51 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 4.02 Total: -29.51 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -1.92 Total: -70.79 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -1.62 Total: -41.04 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -68.46 2.94 -65.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329521747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.221 kcal (2) G-P(sol) polarization free energy of solvation -68.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds