Wall clock time and date at job start Tue Mar 31 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99975 * 2 1 4 4 H 1.08996 * 110.01984 * 331.39665 * 3 2 1 5 5 C 1.54270 * 110.06871 * 92.81109 * 3 2 1 6 6 C 1.54890 * 104.19679 * 142.91822 * 5 3 2 7 7 C 1.54895 * 102.74521 * 322.05878 * 6 5 3 8 8 C 1.53875 * 110.03215 * 209.99994 * 3 2 1 9 9 H 1.08996 * 110.02924 * 121.34082 * 8 3 2 10 10 C 1.50701 * 110.03325 * 359.95473 * 8 3 2 11 11 O 1.21282 * 119.99591 * 274.01708 * 10 8 3 12 12 N 1.34769 * 119.99742 * 94.02131 * 10 8 3 13 13 C 1.39943 * 119.99950 * 184.76928 * 12 10 8 14 14 C 1.39295 * 119.94719 * 213.73263 * 13 12 10 15 15 C 1.38478 * 120.43061 * 179.97438 * 14 13 12 16 16 C 1.37691 * 120.32028 * 0.02562 * 15 14 13 17 17 C 1.40740 * 119.88379 * 359.97438 * 16 15 14 18 18 C 1.41411 * 120.20728 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99903 * 153.57360 * 18 17 16 20 20 C 1.39928 * 119.99910 * 333.56263 * 18 17 16 21 21 N 1.30837 * 120.00194 * 329.83662 * 20 18 17 22 22 Si 1.86797 * 120.00221 * 149.83773 * 20 18 17 23 23 H 1.48496 * 109.47719 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.46995 * 300.00140 * 22 20 18 25 25 H 1.48501 * 109.47252 * 59.99918 * 22 20 18 26 26 C 1.38243 * 119.94787 * 34.00520 * 13 12 10 27 27 H 1.08996 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46949 * 299.99872 * 1 2 3 29 29 H 1.08996 * 109.47409 * 59.99587 * 1 2 3 30 30 H 1.08998 * 110.48581 * 261.59099 * 5 3 2 31 31 H 1.09000 * 110.48664 * 24.10741 * 5 3 2 32 32 H 1.08995 * 110.76114 * 80.36694 * 6 5 3 33 33 H 1.08998 * 110.75950 * 203.56082 * 6 5 3 34 34 H 1.09004 * 110.48403 * 279.26085 * 7 6 5 35 35 H 1.08997 * 110.48493 * 156.62249 * 7 6 5 36 36 H 0.96998 * 120.00555 * 4.76586 * 12 10 8 37 37 H 1.08004 * 119.78264 * 359.97438 * 14 13 12 38 38 H 1.07995 * 119.84510 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.05658 * 179.97438 * 16 15 14 40 40 H 0.97004 * 119.99590 * 353.28491 * 21 20 18 41 41 H 1.08000 * 120.15908 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3406 2.0120 -0.4903 5 6 2.2904 1.7602 1.4473 6 6 3.6248 2.5404 1.3487 7 6 4.4264 1.7167 0.3104 8 6 3.3683 1.2778 -0.7228 9 1 3.3575 1.9703 -1.5644 10 6 3.6672 -0.1178 -1.2069 11 8 4.2023 -0.9149 -0.4659 12 7 3.3398 -0.4798 -2.4631 13 6 3.5254 -1.8024 -2.8809 14 6 3.8790 -2.0714 -4.2011 15 6 4.0656 -3.3764 -4.6252 16 6 3.9030 -4.4232 -3.7456 17 6 3.5458 -4.1666 -2.4087 18 6 3.3775 -5.2364 -1.4994 19 1 3.5280 -5.0752 -0.4421 20 6 3.0158 -6.5038 -1.9694 21 7 2.2852 -6.6173 -3.0488 22 14 3.5760 -8.0338 -1.0558 23 1 3.0648 -9.2415 -1.7523 24 1 5.0601 -8.0740 -1.0211 25 1 3.0492 -8.0022 0.3323 26 6 3.3519 -2.8402 -1.9843 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.4928 2.4121 1.8035 31 1 2.3985 0.8971 2.1042 32 1 3.4536 3.5546 0.9880 33 1 4.1356 2.5555 2.3115 34 1 4.8818 0.8465 0.7832 35 1 5.1876 2.3368 -0.1630 36 1 2.9756 0.1764 -3.0776 37 1 4.0084 -1.2569 -4.8985 38 1 4.3393 -3.5742 -5.6510 39 1 4.0492 -5.4393 -4.0811 40 1 1.9130 -5.8256 -3.4679 41 1 3.0731 -2.6329 -0.9617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335984059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:42 Heat of formation + Delta-G solvation = -76.583676 kcal Electronic energy + Delta-G solvation = -23262.089722 eV Core-core repulsion = 19912.924322 eV Total energy + Delta-G solvation = -3349.165399 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.23258 -38.44043 -37.08206 -35.76807 -34.45831 -32.98918 -29.85970 -29.57862 -28.33622 -27.66460 -26.06177 -24.97830 -22.56684 -21.07953 -20.92637 -20.36534 -19.20039 -18.07019 -17.42550 -16.39317 -15.76200 -15.46443 -15.21333 -14.71627 -14.52908 -14.18705 -13.92707 -13.81407 -13.50375 -13.33754 -12.79637 -12.45396 -12.13627 -11.76043 -11.64708 -11.51380 -11.43758 -11.28630 -11.20556 -10.98494 -10.85691 -10.69788 -10.46326 -10.33967 -10.15748 -9.60677 -9.58596 -9.22562 -8.88460 -8.81158 -7.55089 -7.15151 -6.89067 -4.30917 2.62874 2.91687 3.23188 3.29219 3.42093 3.47030 3.61785 3.83991 4.11421 4.36531 4.48387 4.64791 4.81643 5.04585 5.19074 5.24678 5.27661 5.33902 5.39162 5.48191 5.51685 5.63443 5.72752 5.78461 5.86516 5.88263 6.06981 6.19836 6.30862 6.40368 6.77180 6.98825 7.03320 7.09658 7.22119 7.53898 7.69271 7.82466 7.92596 7.99411 8.26263 8.32173 8.41838 8.86538 8.91572 9.02106 10.12839 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019196 B = 0.004479 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.278252 B = 6250.441749 C = 6778.010202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.096 3.904 4 H 0.068 0.932 5 C -0.145 4.145 6 C -0.120 4.120 7 C -0.113 4.113 8 C -0.113 4.113 9 H 0.093 0.907 10 C 0.530 3.470 11 O -0.510 6.510 12 N -0.669 5.669 13 C 0.167 3.833 14 C -0.279 4.279 15 C -0.072 4.072 16 C -0.230 4.230 17 C 0.108 3.892 18 C -0.525 4.525 19 H 0.076 0.924 20 C 0.045 3.955 21 N -0.793 5.793 22 Si 1.061 2.939 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.276 1.276 26 C -0.208 4.208 27 H 0.088 0.912 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.394 0.606 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.297 0.703 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.549 16.492 4.374 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C 0.038 3.962 4 H 0.086 0.914 5 C -0.183 4.183 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.135 4.135 9 H 0.111 0.889 10 C 0.316 3.684 11 O -0.384 6.384 12 N -0.312 5.312 13 C 0.074 3.926 14 C -0.301 4.301 15 C -0.091 4.091 16 C -0.250 4.250 17 C 0.105 3.895 18 C -0.553 4.553 19 H 0.094 0.906 20 C -0.178 4.178 21 N -0.416 5.416 22 Si 0.885 3.115 23 H -0.200 1.200 24 H -0.200 1.200 25 H -0.202 1.202 26 C -0.230 4.230 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.228 0.772 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.124 14.104 4.840 15.062 hybrid contribution -0.502 2.409 -0.467 2.505 sum -2.627 16.513 4.374 17.283 Atomic orbital electron populations 1.22781 0.81184 1.03166 0.99279 1.88155 1.19458 1.26180 1.94761 1.22684 0.92731 0.85479 0.95329 0.91373 1.22893 0.97685 1.00669 0.97047 1.22395 0.95571 0.98236 0.99511 1.22370 0.96388 1.00882 0.95419 1.22106 0.96257 0.95643 0.99485 0.88873 1.19963 0.77905 0.88991 0.81581 1.90704 1.40827 1.52638 1.54265 1.43447 1.63949 1.10446 1.13319 1.17480 0.99358 0.81930 0.93784 1.19971 1.19385 0.95993 0.94708 1.20351 0.98927 0.92538 0.97306 1.21082 1.11297 0.97487 0.95123 1.17536 0.88203 0.91896 0.91866 1.20500 1.43700 0.94831 0.96260 0.90621 1.26960 0.92494 1.02827 0.95493 1.70451 1.18762 1.36659 1.15703 0.83716 0.77574 0.74298 0.75955 1.19987 1.19974 1.20156 1.21007 1.11111 0.91351 0.99496 0.89386 0.94326 0.94256 0.91477 0.89940 0.91463 0.90940 0.89068 0.91134 0.77244 0.89331 0.89073 0.88065 0.89018 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.85 101.05 1.10 1.49 16 2 O -0.37 -5.84 8.82 -35.23 -0.31 -6.15 16 3 C 0.10 1.18 3.35 -25.61 -0.09 1.10 16 4 H 0.07 0.66 7.80 -51.93 -0.41 0.25 16 5 C -0.15 -1.55 6.56 -25.07 -0.16 -1.72 16 6 C -0.12 -1.12 6.91 -24.73 -0.17 -1.30 16 7 C -0.11 -1.35 6.31 -25.07 -0.16 -1.51 16 8 C -0.11 -1.48 3.29 -90.65 -0.30 -1.78 16 9 H 0.09 0.93 8.13 -51.93 -0.42 0.51 16 10 C 0.53 9.93 5.31 -10.99 -0.06 9.87 16 11 O -0.51 -12.01 13.44 5.55 0.07 -11.93 16 12 N -0.67 -12.59 5.34 -9.91 -0.05 -12.64 16 13 C 0.17 3.93 6.26 -83.76 -0.52 3.41 16 14 C -0.28 -6.35 9.97 -39.10 -0.39 -6.74 16 15 C -0.07 -1.73 10.02 -39.69 -0.40 -2.12 16 16 C -0.23 -6.16 8.17 -38.84 -0.32 -6.48 16 17 C 0.11 3.07 5.24 -106.85 -0.56 2.51 16 18 C -0.53 -14.94 8.93 -37.74 -0.34 -15.28 16 19 H 0.08 2.17 8.00 -52.49 -0.42 1.75 16 20 C 0.04 1.18 4.79 -17.34 -0.08 1.10 16 21 N -0.79 -21.71 12.41 55.55 0.69 -21.02 16 22 Si 1.06 22.68 30.02 -169.99 -5.10 17.58 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 C -0.21 -5.64 8.39 -38.69 -0.32 -5.97 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.37 6.89 -51.93 -0.36 1.01 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.39 5.83 8.81 -40.82 -0.36 5.47 16 37 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.10 2.77 6.76 -52.49 -0.35 2.41 16 40 H 0.30 8.35 7.19 -40.82 -0.29 8.05 16 41 H 0.11 3.17 6.44 -52.49 -0.34 2.83 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -32.90 336.86 -8.37 -41.27 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -5.97 Total: 11.23 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -2.77 Total: -23.42 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.64 Total: -33.66 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.24 Total: -18.08 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.10 Total: 17.58 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.90 -8.37 -41.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335984059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.311 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds