Wall clock time and date at job start Tue Mar 31 2020 05:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99975 * 2 1 4 4 H 1.08996 * 110.01984 * 331.39665 * 3 2 1 5 5 C 1.54270 * 110.06871 * 92.81109 * 3 2 1 6 6 C 1.54890 * 104.19679 * 142.91822 * 5 3 2 7 7 C 1.54895 * 102.74521 * 322.05878 * 6 5 3 8 8 C 1.53875 * 110.03215 * 209.99994 * 3 2 1 9 9 H 1.08996 * 110.02924 * 121.34082 * 8 3 2 10 10 C 1.50701 * 110.03325 * 359.95473 * 8 3 2 11 11 O 1.21282 * 119.99591 * 274.01708 * 10 8 3 12 12 N 1.34769 * 119.99742 * 94.02131 * 10 8 3 13 13 C 1.39943 * 119.99950 * 184.76928 * 12 10 8 14 14 C 1.39295 * 119.94719 * 213.73263 * 13 12 10 15 15 C 1.38478 * 120.43061 * 179.97438 * 14 13 12 16 16 C 1.37691 * 120.32028 * 0.02562 * 15 14 13 17 17 C 1.40740 * 119.88379 * 359.97438 * 16 15 14 18 18 C 1.41411 * 120.20728 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99903 * 153.57360 * 18 17 16 20 20 C 1.39928 * 119.99910 * 333.56263 * 18 17 16 21 21 N 1.30837 * 120.00194 * 329.83662 * 20 18 17 22 22 Si 1.86797 * 120.00221 * 149.83773 * 20 18 17 23 23 H 1.48496 * 109.47719 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.46995 * 300.00140 * 22 20 18 25 25 H 1.48501 * 109.47252 * 59.99918 * 22 20 18 26 26 C 1.38243 * 119.94787 * 34.00520 * 13 12 10 27 27 H 1.08996 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46949 * 299.99872 * 1 2 3 29 29 H 1.08996 * 109.47409 * 59.99587 * 1 2 3 30 30 H 1.08998 * 110.48581 * 261.59099 * 5 3 2 31 31 H 1.09000 * 110.48664 * 24.10741 * 5 3 2 32 32 H 1.08995 * 110.76114 * 80.36694 * 6 5 3 33 33 H 1.08998 * 110.75950 * 203.56082 * 6 5 3 34 34 H 1.09004 * 110.48403 * 279.26085 * 7 6 5 35 35 H 1.08997 * 110.48493 * 156.62249 * 7 6 5 36 36 H 0.96998 * 120.00555 * 4.76586 * 12 10 8 37 37 H 1.08004 * 119.78264 * 359.97438 * 14 13 12 38 38 H 1.07995 * 119.84510 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.05658 * 179.97438 * 16 15 14 40 40 H 0.97004 * 119.99590 * 353.28491 * 21 20 18 41 41 H 1.08000 * 120.15908 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3406 2.0120 -0.4903 5 6 2.2904 1.7602 1.4473 6 6 3.6248 2.5404 1.3487 7 6 4.4264 1.7167 0.3104 8 6 3.3683 1.2778 -0.7228 9 1 3.3575 1.9703 -1.5644 10 6 3.6672 -0.1178 -1.2069 11 8 4.2023 -0.9149 -0.4659 12 7 3.3398 -0.4798 -2.4631 13 6 3.5254 -1.8024 -2.8809 14 6 3.8790 -2.0714 -4.2011 15 6 4.0656 -3.3764 -4.6252 16 6 3.9030 -4.4232 -3.7456 17 6 3.5458 -4.1666 -2.4087 18 6 3.3775 -5.2364 -1.4994 19 1 3.5280 -5.0752 -0.4421 20 6 3.0158 -6.5038 -1.9694 21 7 2.2852 -6.6173 -3.0488 22 14 3.5760 -8.0338 -1.0558 23 1 3.0648 -9.2415 -1.7523 24 1 5.0601 -8.0740 -1.0211 25 1 3.0492 -8.0022 0.3323 26 6 3.3519 -2.8402 -1.9843 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.4928 2.4121 1.8035 31 1 2.3985 0.8971 2.1042 32 1 3.4536 3.5546 0.9880 33 1 4.1356 2.5555 2.3115 34 1 4.8818 0.8465 0.7832 35 1 5.1876 2.3368 -0.1630 36 1 2.9756 0.1764 -3.0776 37 1 4.0084 -1.2569 -4.8985 38 1 4.3393 -3.5742 -5.6510 39 1 4.0492 -5.4393 -4.0811 40 1 1.9130 -5.8256 -3.4679 41 1 3.0731 -2.6329 -0.9617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335984059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:41 Heat of formation + Delta-G solvation = -98.149938 kcal Electronic energy + Delta-G solvation = -23263.024905 eV Core-core repulsion = 19912.924322 eV Total energy + Delta-G solvation = -3350.100583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.61053 -39.87717 -38.77276 -36.85544 -36.27929 -34.85676 -31.65326 -31.10407 -29.32356 -29.18788 -27.07280 -27.02875 -24.10033 -22.96560 -22.06628 -21.74406 -20.60495 -19.97037 -18.66394 -17.76642 -17.24225 -16.86271 -16.60411 -16.24017 -15.93679 -15.66691 -15.52089 -15.20788 -14.92737 -14.64533 -14.48456 -14.06700 -13.78428 -13.42804 -13.35377 -12.79489 -12.54252 -12.48634 -12.35599 -12.34396 -12.17028 -11.99663 -11.95489 -11.78821 -11.56090 -11.51436 -11.01501 -10.83588 -10.59365 -10.56074 -9.61535 -9.24665 -8.80999 -6.47276 0.75989 0.93150 1.46610 1.57307 1.77691 1.84083 2.23975 2.31165 2.63622 2.81407 3.46816 3.51546 3.59918 3.81357 4.16132 4.26805 4.33517 4.34383 4.34701 4.42728 4.50337 4.54466 4.56533 4.71308 4.79197 4.80965 4.95728 5.00029 5.01058 5.08008 5.12864 5.17020 5.18083 5.43244 5.56231 5.68564 5.80410 5.86013 5.90217 6.27312 6.28865 6.40117 6.67517 6.82959 6.91034 7.39478 7.98969 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019196 B = 0.004479 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.278252 B = 6250.441749 C = 6778.010202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.414 6.414 3 C 0.089 3.911 4 H 0.107 0.893 5 C -0.145 4.145 6 C -0.108 4.108 7 C -0.117 4.117 8 C -0.107 4.107 9 H 0.139 0.861 10 C 0.524 3.476 11 O -0.568 6.568 12 N -0.659 5.659 13 C 0.173 3.827 14 C -0.262 4.262 15 C -0.070 4.070 16 C -0.249 4.249 17 C 0.081 3.919 18 C -0.570 4.570 19 H 0.053 0.947 20 C 0.013 3.987 21 N -0.805 5.805 22 Si 1.113 2.887 23 H -0.261 1.261 24 H -0.266 1.266 25 H -0.262 1.262 26 C -0.236 4.236 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.418 0.582 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.087 0.913 40 H 0.282 0.718 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 19.711 3.069 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.334 6.334 3 C 0.031 3.969 4 H 0.125 0.875 5 C -0.183 4.183 6 C -0.145 4.145 7 C -0.155 4.155 8 C -0.128 4.128 9 H 0.156 0.844 10 C 0.313 3.687 11 O -0.445 6.445 12 N -0.304 5.304 13 C 0.079 3.921 14 C -0.283 4.283 15 C -0.089 4.089 16 C -0.269 4.269 17 C 0.078 3.922 18 C -0.598 4.598 19 H 0.071 0.929 20 C -0.204 4.204 21 N -0.427 5.427 22 Si 0.929 3.071 23 H -0.185 1.185 24 H -0.191 1.191 25 H -0.187 1.187 26 C -0.258 4.258 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.256 0.744 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.293 17.395 3.511 17.893 hybrid contribution -0.443 1.617 -0.111 1.681 sum -2.736 19.012 3.400 19.507 Atomic orbital electron populations 1.22870 0.79851 1.02557 1.01382 1.88117 1.21293 1.28853 1.95111 1.23031 0.92551 0.84864 0.96421 0.87489 1.22902 0.99584 1.00118 0.95698 1.22400 0.94003 0.99115 0.99016 1.22402 0.97022 1.00050 0.95994 1.22322 0.97204 0.92115 1.01186 0.84361 1.21098 0.76081 0.90910 0.80583 1.90693 1.43208 1.55016 1.55594 1.43419 1.63775 1.08957 1.14248 1.17607 0.97337 0.83465 0.93679 1.20473 1.16254 0.96904 0.94696 1.20780 0.97353 0.92265 0.98513 1.21057 1.12850 0.97915 0.95067 1.17847 0.88877 0.92499 0.92968 1.20607 1.46946 0.96788 0.95421 0.92864 1.28354 0.91255 1.05236 0.95523 1.70567 1.19921 1.35533 1.16689 0.83093 0.77611 0.70938 0.75441 1.18520 1.19099 1.18707 1.20884 1.13520 0.92434 0.98929 0.91538 0.92041 0.92162 0.88578 0.93326 0.87953 0.90569 0.93387 0.88795 0.74408 0.84651 0.85406 0.89437 0.90703 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.85 113.37 1.23 1.93 16 2 O -0.41 -13.20 8.82 -148.98 -1.31 -14.51 16 3 C 0.09 1.96 3.35 31.32 0.11 2.06 16 4 H 0.11 1.53 7.80 -2.39 -0.02 1.51 16 5 C -0.15 -2.80 6.56 31.67 0.21 -2.60 16 6 C -0.11 -1.70 6.91 31.89 0.22 -1.48 16 7 C -0.12 -2.60 6.31 31.67 0.20 -2.40 16 8 C -0.11 -2.53 3.29 -10.82 -0.04 -2.57 16 9 H 0.14 2.02 8.13 -2.39 -0.02 2.00 16 10 C 0.52 19.56 5.31 87.66 0.47 20.03 16 11 O -0.57 -28.20 13.44 -3.03 -0.04 -28.24 16 12 N -0.66 -23.85 5.34 -303.65 -1.62 -25.47 16 13 C 0.17 8.13 6.26 38.10 0.24 8.36 16 14 C -0.26 -11.24 9.97 22.58 0.23 -11.02 16 15 C -0.07 -3.26 10.02 22.20 0.22 -3.04 16 16 C -0.25 -13.70 8.17 22.75 0.19 -13.51 16 17 C 0.08 4.86 5.24 -21.31 -0.11 4.75 16 18 C -0.57 -34.78 8.93 23.46 0.21 -34.57 16 19 H 0.05 3.35 8.00 -2.91 -0.02 3.33 16 20 C 0.01 0.75 4.79 85.25 0.41 1.16 16 21 N -0.81 -45.82 12.41 21.82 0.27 -45.55 16 22 Si 1.11 47.13 30.02 68.60 2.06 49.18 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 26 C -0.24 -13.49 8.39 22.85 0.19 -13.30 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.26 8.08 -2.39 -0.02 1.24 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.50 6.89 -2.38 -0.02 1.48 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.42 10.90 8.81 -92.71 -0.82 10.08 16 37 H 0.14 4.58 8.06 -2.91 -0.02 4.55 16 38 H 0.13 4.95 8.06 -2.91 -0.02 4.92 16 39 H 0.09 4.97 6.76 -2.91 -0.02 4.95 16 40 H 0.28 16.64 7.19 -92.71 -0.67 15.98 16 41 H 0.08 4.94 6.44 -2.91 -0.02 4.92 16 Total: -1.00 -80.02 336.86 3.64 -76.38 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.32 Total: 34.39 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 3.96 Total: -46.18 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -1.35 Total: -71.02 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.35 Total: -42.75 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.06 Total: 49.18 kcal Total: -80.02 3.64 -76.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335984059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.771 kcal (2) G-P(sol) polarization free energy of solvation -80.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds