Wall clock time and date at job start Tue Mar 31 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00298 * 2 1 4 4 H 1.09000 * 110.53440 * 332.60865 * 3 2 1 5 5 C 1.54886 * 110.48923 * 95.22121 * 3 2 1 6 6 C 1.54895 * 102.74683 * 156.62284 * 5 3 2 7 7 C 1.54270 * 104.19718 * 322.05815 * 6 5 3 8 8 C 1.53880 * 106.59690 * 23.61131 * 7 6 5 9 9 H 1.09003 * 110.03094 * 240.66904 * 8 7 6 10 10 C 1.50701 * 110.03174 * 119.28222 * 8 7 6 11 11 O 1.21274 * 120.00126 * 241.45507 * 10 8 7 12 12 N 1.34774 * 119.99599 * 61.45566 * 10 8 7 13 13 C 1.39241 * 119.99618 * 184.03453 * 12 10 8 14 14 C 1.39482 * 119.83220 * 324.49213 * 13 12 10 15 15 C 1.36376 * 120.17017 * 179.71735 * 14 13 12 16 16 C 1.40873 * 119.82261 * 0.58074 * 15 14 13 17 17 C 1.41157 * 120.16094 * 179.67446 * 16 15 14 18 18 H 1.08002 * 119.99928 * 214.80360 * 17 16 15 19 19 C 1.39905 * 120.00290 * 34.80083 * 17 16 15 20 20 N 1.30877 * 119.99394 * 355.56320 * 19 17 16 21 21 Si 1.86796 * 120.00219 * 175.56830 * 19 17 16 22 22 H 1.48500 * 109.47434 * 89.99935 * 21 19 17 23 23 H 1.48501 * 109.46861 * 209.99834 * 21 19 17 24 24 H 1.48502 * 109.46725 * 329.99553 * 21 19 17 25 25 C 1.40871 * 119.67710 * 359.69789 * 16 15 14 26 26 C 1.36368 * 119.82328 * 359.97438 * 25 16 15 27 27 H 1.09001 * 109.47176 * 300.00244 * 1 2 3 28 28 H 1.08996 * 109.47224 * 59.99845 * 1 2 3 29 29 H 1.08995 * 109.47228 * 180.02562 * 1 2 3 30 30 H 1.09003 * 110.75504 * 38.31248 * 5 3 2 31 31 H 1.08996 * 110.91499 * 275.01244 * 5 3 2 32 32 H 1.08999 * 110.48253 * 203.38649 * 6 5 3 33 33 H 1.08999 * 110.48442 * 80.73973 * 6 5 3 34 34 H 1.08993 * 110.03324 * 264.33074 * 7 6 5 35 35 H 1.08996 * 110.03226 * 142.89363 * 7 6 5 36 36 H 0.96997 * 120.00595 * 4.30157 * 12 10 8 37 37 H 1.08003 * 119.91611 * 0.02562 * 14 13 12 38 38 H 1.08000 * 120.09127 * 180.25429 * 15 14 13 39 39 H 0.97001 * 119.99240 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.08653 * 179.97438 * 25 16 15 41 41 H 1.08000 * 119.91671 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3379 2.0234 -0.4696 5 6 2.3514 1.7470 1.4449 6 6 3.4601 2.8063 1.2257 7 6 4.2950 2.2438 0.0568 8 6 3.3731 1.2896 -0.7226 9 1 3.7881 0.2816 -0.7165 10 6 3.2111 1.7722 -2.1410 11 8 2.1131 2.0768 -2.5562 12 7 4.2864 1.8654 -2.9481 13 6 4.1508 2.3902 -4.2307 14 6 2.9889 2.1438 -4.9620 15 6 2.8464 2.6592 -6.2165 16 6 3.8817 3.4321 -6.7781 17 6 3.7446 3.9633 -8.0787 18 1 4.6078 4.0439 -8.7229 19 6 2.4907 4.3854 -8.5334 20 7 1.4303 4.2081 -7.7870 21 14 2.3298 5.2018 -10.2058 22 1 2.0801 4.1661 -11.2404 23 1 1.1960 6.1605 -10.1816 24 1 3.5853 5.9278 -10.5250 25 6 5.0546 3.6718 -6.0357 26 6 5.1797 3.1552 -4.7798 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 2.7299 0.9064 2.0265 31 1 1.4831 2.1915 1.9311 32 1 4.0748 2.9056 2.1203 33 1 3.0218 3.7666 0.9542 34 1 5.1568 1.6988 0.4418 35 1 4.6252 3.0560 -0.5909 36 1 5.1540 1.5632 -2.6370 37 1 2.1980 1.5474 -4.5317 38 1 1.9445 2.4710 -6.7800 39 1 0.5610 4.5011 -8.1021 40 1 5.8527 4.2630 -6.4600 41 1 6.0781 3.3384 -4.2091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336847895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:49 Heat of formation + Delta-G solvation = -71.029887 kcal Electronic energy + Delta-G solvation = -22723.036182 eV Core-core repulsion = 19374.111613 eV Total energy + Delta-G solvation = -3348.924569 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.23836 -38.44805 -37.07647 -35.85458 -34.41316 -32.87683 -29.96644 -29.41978 -28.52439 -28.27419 -26.10123 -24.88462 -22.18492 -21.21839 -20.93174 -20.38123 -19.22331 -17.41228 -17.27708 -16.88997 -15.97940 -15.46564 -15.09165 -14.95308 -14.77530 -14.28576 -13.92184 -13.59701 -13.43776 -12.94307 -12.73981 -12.59802 -12.18018 -11.86475 -11.79475 -11.49972 -11.42211 -11.36109 -11.26957 -11.13379 -10.89770 -10.79620 -10.63385 -10.47499 -9.89435 -9.86206 -9.54969 -9.40180 -8.97588 -8.69595 -7.50565 -6.87195 -6.57860 -4.31722 2.59947 3.01852 3.10550 3.11594 3.15617 3.33582 3.59766 3.90976 4.00105 4.34911 4.54388 4.73531 4.82910 5.19009 5.20414 5.28308 5.34464 5.39248 5.45511 5.51091 5.60937 5.68016 5.70830 5.72656 5.86704 5.95739 6.00160 6.13254 6.15206 6.40472 6.82465 7.02299 7.06318 7.21839 7.22175 7.31853 7.65425 7.69812 8.00098 8.10966 8.22166 8.35899 8.68834 8.79673 8.95087 9.03533 10.33061 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025890 B = 0.003553 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.241316 B = 7878.879496 C = 8507.831633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.096 3.904 4 H 0.089 0.911 5 C -0.144 4.144 6 C -0.122 4.122 7 C -0.115 4.115 8 C -0.113 4.113 9 H 0.107 0.893 10 C 0.507 3.493 11 O -0.528 6.528 12 N -0.652 5.652 13 C 0.005 3.995 14 C -0.094 4.094 15 C -0.144 4.144 16 C 0.100 3.900 17 C -0.464 4.464 18 H 0.075 0.925 19 C 0.069 3.931 20 N -0.808 5.808 21 Si 0.915 3.085 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.204 4.204 26 C -0.114 4.114 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.395 0.605 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.278 0.722 40 H 0.096 0.904 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -4.692 15.331 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.038 3.962 4 H 0.107 0.893 5 C -0.182 4.182 6 C -0.159 4.159 7 C -0.153 4.153 8 C -0.134 4.134 9 H 0.125 0.875 10 C 0.293 3.707 11 O -0.404 6.404 12 N -0.295 5.295 13 C -0.087 4.087 14 C -0.114 4.114 15 C -0.164 4.164 16 C 0.097 3.903 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.146 4.146 20 N -0.435 5.435 21 Si 0.740 3.260 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.224 4.224 26 C -0.134 4.134 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.228 0.772 37 H 0.124 0.876 38 H 0.148 0.852 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.373 -4.583 15.040 15.783 hybrid contribution 0.117 0.527 -0.537 0.762 sum 1.490 -4.056 14.503 15.133 Atomic orbital electron populations 1.22757 0.80995 1.02401 1.00218 1.87832 1.19847 1.27538 1.94893 1.22903 0.93759 0.85425 0.94105 0.89299 1.22959 0.98969 0.99100 0.97138 1.22264 0.96985 0.98615 0.98084 1.22100 0.97601 0.98554 0.96997 1.21964 0.97243 1.01712 0.92518 0.87529 1.20376 0.84880 0.78562 0.86856 1.90682 1.25337 1.48817 1.75561 1.42966 1.10763 1.61952 1.13776 1.17300 0.98932 1.07269 0.85186 1.20646 0.95934 1.00385 0.94395 1.21308 1.01309 0.98797 0.94997 1.17724 0.90632 0.88857 0.93048 1.19481 0.94328 1.36709 0.98935 0.90660 1.25890 0.95309 0.94911 0.98508 1.69796 0.99782 1.37587 1.36355 0.86208 0.78733 0.79398 0.81676 1.19531 1.20315 1.18766 1.20685 1.00627 1.06356 0.94737 1.20069 0.97230 0.99304 0.96779 0.94397 0.93369 0.89938 0.90505 0.91302 0.91032 0.91172 0.90584 0.90679 0.77202 0.87569 0.85198 0.91112 0.88556 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.85 101.05 1.10 1.48 16 2 O -0.38 -5.37 10.41 -35.23 -0.37 -5.73 16 3 C 0.10 1.29 2.66 -25.07 -0.07 1.23 16 4 H 0.09 1.38 6.58 -51.93 -0.34 1.04 16 5 C -0.14 -1.47 6.62 -24.74 -0.16 -1.63 16 6 C -0.12 -1.16 6.83 -25.07 -0.17 -1.33 16 7 C -0.11 -1.19 6.39 -25.61 -0.16 -1.36 16 8 C -0.11 -1.49 3.06 -90.65 -0.28 -1.77 16 9 H 0.11 1.30 8.07 -51.93 -0.42 0.88 16 10 C 0.51 9.10 6.76 -10.99 -0.07 9.02 16 11 O -0.53 -11.78 12.86 5.56 0.07 -11.71 16 12 N -0.65 -11.56 5.14 -9.74 -0.05 -11.61 16 13 C 0.01 0.12 6.30 -83.57 -0.53 -0.41 16 14 C -0.09 -2.37 8.61 -39.79 -0.34 -2.71 16 15 C -0.14 -3.92 8.62 -39.26 -0.34 -4.26 16 16 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 17 C -0.46 -12.49 9.02 -37.85 -0.34 -12.83 16 18 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 19 C 0.07 1.78 5.42 -17.33 -0.09 1.69 16 20 N -0.81 -21.78 10.60 55.55 0.59 -21.19 16 21 Si 0.91 19.26 29.56 -169.99 -5.03 14.23 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 25 C -0.20 -4.96 9.74 -39.26 -0.38 -5.35 16 26 C -0.11 -2.49 9.90 -39.79 -0.39 -2.89 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.86 7.59 -51.93 -0.39 0.47 16 36 H 0.39 5.44 8.82 -40.82 -0.36 5.08 16 37 H 0.11 2.72 6.25 -52.48 -0.33 2.39 16 38 H 0.13 3.70 6.13 -52.49 -0.32 3.38 16 39 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 40 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 41 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -31.11 337.01 -8.47 -39.59 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.94 Total: 10.35 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -2.83 Total: -19.02 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.54 Total: -32.79 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.30 Total: -17.44 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.11 -8.47 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336847895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.443 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds